RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 FHDC1Q9C0D6 1143 aaPredicted RBP10.25□□□□□ -0.77
COL6A3-201ENST00000295550 MANSC1Q9H8J5 431 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 ADAM30Q9UKF2 790 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 CLASP2O75122 1294 aaKnown RBP10.25□□□□□ -0.77
COL6A3-201ENST00000295550 MAPK7Q13164 816 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 KIZQ2M2Z5 673 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 TRIQKQ629K1 86 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 ASIC4Q96FT7 647 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 CFAP99D6REC4 459 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 SASH3O75995 380 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 NUDT2P50583 147 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 ITPK1Q13572 414 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 ZNF235Q14590 738 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 SHROOM1Q2M3G4 852 aaPredicted RBP10.25□□□□□ -0.77
COL6A3-201ENST00000295550 CYB5D1Q6P9G0 228 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 ZNF467Q7Z7K2 595 aaPredicted RBP10.25□□□□□ -0.77
COL6A3-201ENST00000295550 C6orf62Q9GZU0 229 aaPredicted RBP10.25□□□□□ -0.77
COL6A3-201ENST00000295550 MRPL39Q9NYK5 338 aaKnown RBP10.25□□□□□ -0.77
COL6A3-201ENST00000295550 NAGPAQ9UK23 515 aa10.25□□□□□ -0.77
COL6A3-201ENST00000295550 E2F8A0AVK6 867 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 MUTP22033 750 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 KLRK1P26718 216 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 SEPT12Q8IYM1 358 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 MYCBPAPQ8TBZ2 947 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 XPO7Q9UIA9 1087 aaKnown RBP10.24□□□□□ -0.77
COL6A3-201ENST00000295550 BCL9O00512 1426 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 CCDC88AQ3V6T2 1871 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 ADRM1Q16186 407 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 MEA1Q16626 185 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 C11orf63Q6NUN7 778 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 VGLL2Q8N8G2 317 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 MRPL4Q9BYD3 311 aaKnown RBP10.24□□□□□ -0.77
COL6A3-201ENST00000295550 LACRTQ9GZZ8 138 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 C2orf40Q9H1Z8 148 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 TMEM8AQ9HCN3 771 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 SMAPO00193 183 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 COX10Q12887 443 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 SUPT20HL1Q3ZLR7 823 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 CLEC4MQ9H2X3 399 aaPredicted RBP10.24□□□□□ -0.77
COL6A3-201ENST00000295550 VCPKMTQ9H867 229 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 POLD4Q9HCU8 107 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 PCDHA10Q9Y5I2 948 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 DUSP10Q9Y6W6 482 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 STX7O15400 261 aaKnown RBP10.24□□□□□ -0.77
COL6A3-201ENST00000295550 PSMA3P25788 255 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 EFNA5P52803 228 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 OR2W6PQ8NHA6 318 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 DCPSQ96C86 337 aaKnown RBP10.24□□□□□ -0.77
COL6A3-201ENST00000295550 DMAP1Q9NPF5 467 aaPredicted RBP10.24□□□□□ -0.77
COL6A3-201ENST00000295550 AGO2Q9UKV8 859 aaKnown RBP10.24□□□□□ -0.77
COL6A3-201ENST00000295550 SSTR3P32745 418 aaPredicted RBP10.24□□□□□ -0.77
COL6A3-201ENST00000295550 TALDO1P37837 337 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 ZNF200P98182 395 aaPredicted RBP10.24□□□□□ -0.77
COL6A3-201ENST00000295550 DCAF4L1Q3SXM0 396 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 LDHDQ86WU2 507 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 COL23A1Q86Y22 540 aaPredicted RBP10.24□□□□□ -0.77
COL6A3-201ENST00000295550 APPL2Q8NEU8 664 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 WDR48Q8TAF3 677 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 RMDN1Q96DB5 314 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 TMBIM4Q9HC24 238 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 OASLQ15646 514 aaKnown RBP10.24□□□□□ -0.77
COL6A3-201ENST00000295550 MAPK6Q16659 721 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 KLHL17Q6TDP4 642 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 MPP4Q96JB8 637 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 CYLDQ9NQC7 956 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 IGSF9BQ9UPX0 1349 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 CLPTM1O96005 669 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 ZNF394Q53GI3 561 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 INTS5Q6P9B9 1019 aaKnown RBP10.24□□□□□ -0.77
COL6A3-201ENST00000295550 KRT77Q7Z794 578 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 ELMOD1Q8N336 334 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 DCUN1D1Q96GG9 259 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 FAM217BQ9NTX9 383 aaPredicted RBP10.24□□□□□ -0.77
COL6A3-201ENST00000295550 WHRNQ9P202 907 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 RWDD3Q9Y3V2 267 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 SDK1Q7Z5N4 2213 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 NQO1P15559 274 aaKnown RBP10.24□□□□□ -0.77
COL6A3-201ENST00000295550 COMTP21964 271 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 KYAT1Q16773 422 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 SYTL3Q4VX76 610 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 THEM5Q8N1Q8 247 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 TTLL6Q8N841 843 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 HDHD2Q9H0R4 259 aa10.24□□□□□ -0.77
COL6A3-201ENST00000295550 PABPC3Q9H361 631 aaKnown RBP10.24□□□□□ -0.77
COL6A3-201ENST00000295550 TAF4O00268 1085 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 ZBTB39O15060 712 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 DGAT1O75907 488 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 NDUFB10O96000 172 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 MTHFD1LQ6UB35 978 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 ARMCX6Q7L4S7 300 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 P3H2Q8IVL5 708 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 KRCC1Q9NPI7 259 aaPredicted RBP10.23□□□□□ -0.77
COL6A3-201ENST00000295550 RNF146Q9NTX7 359 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 ACTR2P61160 394 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 DSTYKQ6XUX3 929 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 A0A087X0T9 212 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 FAM228BP0C875 321 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 FLT3P36888 993 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 SCTRP47872 440 aa10.23□□□□□ -0.77
COL6A3-201ENST00000295550 CPA2P48052 419 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms