RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 OLFML1Q6UWY5 402 aa8.15□□□□□ -1.1
USP3-201ENST00000268049 RGS9BPQ6ZS82 235 aa8.15□□□□□ -1.1
USP3-201ENST00000268049 HIPK4Q8NE63 616 aa8.15□□□□□ -1.1
USP3-201ENST00000268049 TSTD1Q8NFU3 115 aa8.15□□□□□ -1.1
USP3-201ENST00000268049 DHTKD1Q96HY7 919 aaPredicted RBP8.15□□□□□ -1.1
USP3-201ENST00000268049 PRRX2Q99811 253 aa8.15□□□□□ -1.1
USP3-201ENST00000268049 ADAM2Q99965 735 aa8.15□□□□□ -1.1
USP3-201ENST00000268049 SENP7Q9BQF6 1050 aa8.15□□□□□ -1.1
USP3-201ENST00000268049 APOL5Q9BWW9 433 aa8.15□□□□□ -1.1
USP3-201ENST00000268049 C17orf75Q9HAS0 396 aa8.15□□□□□ -1.1
USP3-201ENST00000268049 PAPOLBQ9NRJ5 636 aaKnown RBP8.15□□□□□ -1.1
USP3-201ENST00000268049 NDRG2Q9UN36 371 aaKnown RBP8.15□□□□□ -1.1
USP3-201ENST00000268049 VWA5AO00534 786 aa8.15□□□□□ -1.1
USP3-201ENST00000268049 PTPN3P26045 913 aa8.15□□□□□ -1.1
USP3-201ENST00000268049 CDC25AP30304 524 aa8.15□□□□□ -1.1
USP3-201ENST00000268049 GNL1P36915 607 aaPredicted RBP8.15□□□□□ -1.1
USP3-201ENST00000268049 ALDH5A1P51649 535 aaPredicted RBP8.15□□□□□ -1.1
USP3-201ENST00000268049 PLTPP55058 493 aa8.15□□□□□ -1.1
USP3-201ENST00000268049 TPI1P60174 286 aa8.15□□□□□ -1.1
USP3-201ENST00000268049 STX1BP61266 288 aa8.15□□□□□ -1.1
USP3-201ENST00000268049 DMPKQ09013 629 aa8.15□□□□□ -1.1
USP3-201ENST00000268049 SMARCB1Q12824 385 aa8.15□□□□□ -1.1
USP3-201ENST00000268049 RETSATQ6NUM9 610 aa8.15□□□□□ -1.1
USP3-201ENST00000268049 TMCO5AQ8N6Q1 288 aa8.15□□□□□ -1.1
USP3-201ENST00000268049 ZNF248Q8NDW4 579 aa8.15□□□□□ -1.1
USP3-201ENST00000268049 PIGOQ8TEQ8 1089 aa8.15□□□□□ -1.1
USP3-201ENST00000268049 PABPC5Q96DU9 382 aaKnown RBP8.15□□□□□ -1.1
USP3-201ENST00000268049 SIKE1Q9BRV8 207 aa8.15□□□□□ -1.1
USP3-201ENST00000268049 WDR18Q9BV38 432 aa8.15□□□□□ -1.1
USP3-201ENST00000268049 CINPQ9BW66 212 aaPredicted RBP8.15□□□□□ -1.1
USP3-201ENST00000268049 CD248Q9HCU0 757 aa8.15□□□□□ -1.1
USP3-201ENST00000268049 VPS51Q9UID3 782 aa8.15□□□□□ -1.1
USP3-201ENST00000268049 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.15□□□□□ -1.1
USP3-201ENST00000268049 GOLGA8IPA6NC78 632 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 BTBD19C9JJ37 291 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 LGR5O75473 907 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 GPC4O75487 556 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 CFIP05156 583 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 ALADP13716 330 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 DHPSP49366 369 aaPredicted RBP8.15□□□□□ -1.11
USP3-201ENST00000268049 SULT1E1P49888 294 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 ANTXR2P58335 489 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 SLC20A2Q08357 652 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 NOMO2Q5JPE7 1267 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 PRPF39Q86UA1 669 aaKnown RBP8.15□□□□□ -1.11
USP3-201ENST00000268049 CARNMT1Q8N4J0 409 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 ZNF655Q8N720 491 aaPredicted RBP8.15□□□□□ -1.11
USP3-201ENST00000268049 GSDMAQ96QA5 445 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 CALN1Q9BXU9 219 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 UBXN6Q9BZV1 441 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 SLC39A2Q9NP94 309 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 GJB4Q9NTQ9 266 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 DLGAP2Q9P1A6 1054 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 SLC39A10Q9ULF5 831 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 CNTNAP2Q9UHC6 1331 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 ZNF839A8K0R7 811 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 HNRNPCL2B2RXH8 293 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 IFRD1O00458 451 aaPredicted RBP8.15□□□□□ -1.11
USP3-201ENST00000268049 HNRNPCL1O60812 293 aaKnown RBP8.15□□□□□ -1.11
USP3-201ENST00000268049 KLRC1P26715 233 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 RENBPP51606 427 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 ACTR2P61160 394 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 SPATA1Q5VX52 437 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 CNKSR3Q6P9H4 555 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 TRAF7Q6Q0C0 670 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 ANKLE1Q8NAG6 615 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 DNAJB3Q8WWF6 145 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 KIAA1143Q96AT1 154 aaPredicted RBP8.15□□□□□ -1.11
USP3-201ENST00000268049 OTUB1Q96FW1 271 aaPredicted RBP8.15□□□□□ -1.11
USP3-201ENST00000268049 SPATA17Q96L03 361 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 GAD1Q99259 594 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 UPF3AQ9H1J1 476 aaKnown RBP8.15□□□□□ -1.11
USP3-201ENST00000268049 CARD9Q9H257 536 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 COG4Q9H9E3 785 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 MAD2L2Q9UI95 211 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 ZFP69BQ9UJL9 534 aa8.15□□□□□ -1.11
USP3-201ENST00000268049 GLI3P10071 1580 aa8.14□□□□□ -1.11
USP3-201ENST00000268049 RHOBTB1O94844 696 aa8.14□□□□□ -1.11
USP3-201ENST00000268049 CSH1P0DML2 217 aa8.14□□□□□ -1.11
USP3-201ENST00000268049 CSH2P0DML3 217 aa8.14□□□□□ -1.11
USP3-201ENST00000268049 PYGBP11216 843 aa8.14□□□□□ -1.11
USP3-201ENST00000268049 AMD1P17707 334 aa8.14□□□□□ -1.11
USP3-201ENST00000268049 SP100P23497 879 aaPredicted RBP8.14□□□□□ -1.11
USP3-201ENST00000268049 FKBP3Q00688 224 aaKnown RBP8.14□□□□□ -1.11
USP3-201ENST00000268049 MTFR1Q15390 333 aa8.14□□□□□ -1.11
USP3-201ENST00000268049 SGSM1Q2NKQ1 1148 aa8.14□□□□□ -1.11
USP3-201ENST00000268049 UAP1L1Q3KQV9 507 aa8.14□□□□□ -1.11
USP3-201ENST00000268049 CATSPERGQ6ZRH7 1159 aa8.14□□□□□ -1.11
USP3-201ENST00000268049 SZRD1Q7Z422 152 aa8.14□□□□□ -1.11
USP3-201ENST00000268049 NANOGNBQ7Z5D8 188 aa8.14□□□□□ -1.11
USP3-201ENST00000268049 ARL10Q8N8L6 244 aa8.14□□□□□ -1.11
USP3-201ENST00000268049 LEMD2Q8NC56 503 aa8.14□□□□□ -1.11
USP3-201ENST00000268049 SUN3Q8TAQ9 357 aa8.14□□□□□ -1.11
USP3-201ENST00000268049 OXER1Q8TDS5 423 aa8.14□□□□□ -1.11
USP3-201ENST00000268049 SPIRE2Q8WWL2 714 aa8.14□□□□□ -1.11
USP3-201ENST00000268049 CNPPD1Q9BV87 410 aa8.14□□□□□ -1.11
USP3-201ENST00000268049 RPRD1BQ9NQG5 326 aaKnown RBP8.14□□□□□ -1.11
USP3-201ENST00000268049 SETD4Q9NVD3 440 aa8.14□□□□□ -1.11
USP3-201ENST00000268049 GID8Q9NWU2 228 aa8.14□□□□□ -1.11
USP3-201ENST00000268049 TBC1D14Q9P2M4 693 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms