RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 POLIQ9UNA4 740 aa17.43■□□□□ 0.38
PHRF1-201ENST00000264555 PDE2AO00408 941 aaPredicted RBP17.43■□□□□ 0.38
PHRF1-201ENST00000264555 LRRC6Q86X45 466 aa17.43■□□□□ 0.38
PHRF1-201ENST00000264555 TMEM161BQ8NDZ6 487 aa17.43■□□□□ 0.38
PHRF1-201ENST00000264555 DDX27Q96GQ7 796 aaKnown RBP17.43■□□□□ 0.38
PHRF1-201ENST00000264555 BARX2Q9UMQ3 279 aaPredicted RBP17.43■□□□□ 0.38
PHRF1-201ENST00000264555 ODC1P11926 461 aa17.42■□□□□ 0.38
PHRF1-201ENST00000264555 RNF219Q5W0B1 726 aaPredicted RBP17.42■□□□□ 0.38
PHRF1-201ENST00000264555 KRT80Q6KB66 452 aa17.42■□□□□ 0.38
PHRF1-201ENST00000264555 SEMA4AQ9H3S1 761 aa17.42■□□□□ 0.38
PHRF1-201ENST00000264555 NFASCO94856 1347 aa17.42■□□□□ 0.38
PHRF1-201ENST00000264555 FAM153BP0C7A2 387 aa17.42■□□□□ 0.38
PHRF1-201ENST00000264555 ALDH18A1P54886 795 aaKnown RBP17.42■□□□□ 0.38
PHRF1-201ENST00000264555 ZNF268Q14587 947 aaPredicted RBP17.42■□□□□ 0.38
PHRF1-201ENST00000264555 USP10Q14694 798 aaKnown RBP17.42■□□□□ 0.38
PHRF1-201ENST00000264555 FAM153CQ494X1 144 aa17.42■□□□□ 0.38
PHRF1-201ENST00000264555 ELMSAN1Q6PJG2 1045 aa17.42■□□□□ 0.38
PHRF1-201ENST00000264555 EMC1Q8N766 993 aa17.42■□□□□ 0.38
PHRF1-201ENST00000264555 ZBTB45Q96K62 511 aaPredicted RBP17.42■□□□□ 0.38
PHRF1-201ENST00000264555 FAM153AQ9UHL3 310 aa17.42■□□□□ 0.38
PHRF1-201ENST00000264555 STRNO43815 780 aa17.42■□□□□ 0.38
PHRF1-201ENST00000264555 CSPG5O95196 566 aa17.42■□□□□ 0.38
PHRF1-201ENST00000264555 RARAP10276 462 aa17.42■□□□□ 0.38
PHRF1-201ENST00000264555 PTGER2P43116 358 aa17.42■□□□□ 0.38
PHRF1-201ENST00000264555 FBXW10Q5XX13 1052 aa17.42■□□□□ 0.38
PHRF1-201ENST00000264555 ZC3H15Q8WU90 426 aaKnown RBP17.42■□□□□ 0.38
PHRF1-201ENST00000264555 RXFP2Q8WXD0 754 aa17.42■□□□□ 0.38
PHRF1-201ENST00000264555 ZBED2Q9BTP6 218 aa17.42■□□□□ 0.38
PHRF1-201ENST00000264555 C20orf96Q9NUD7 363 aaPredicted RBP17.42■□□□□ 0.38
PHRF1-201ENST00000264555 UBA6A0AVT1 1052 aaPredicted RBP17.42■□□□□ 0.38
PHRF1-201ENST00000264555 PEX19P40855 299 aa17.42■□□□□ 0.38
PHRF1-201ENST00000264555 LAMB3Q13751 1172 aa17.42■□□□□ 0.38
PHRF1-201ENST00000264555 NAPEPLDQ6IQ20 393 aa17.42■□□□□ 0.38
PHRF1-201ENST00000264555 TRIM49D1C9J1S8 452 aa17.41■□□□□ 0.38
PHRF1-201ENST00000264555 SETSIPP0DME0 302 aa17.41■□□□□ 0.38
PHRF1-201ENST00000264555 SERPINB4P48594 390 aa17.41■□□□□ 0.38
PHRF1-201ENST00000264555 VCPP55072 806 aaKnown RBP17.41■□□□□ 0.38
PHRF1-201ENST00000264555 EFTUD2Q15029 972 aaKnown RBP eCLIP17.41■□□□□ 0.382e-6■■■■□ 25.9
PHRF1-201ENST00000264555 CCNJLQ8IV13 435 aa17.41■□□□□ 0.38
PHRF1-201ENST00000264555 TSPAN17Q96FV3 270 aa17.41■□□□□ 0.38
PHRF1-201ENST00000264555 VTA1Q9NP79 307 aa17.41■□□□□ 0.38
PHRF1-201ENST00000264555 RIOX2Q8IUF8 465 aa17.41■□□□□ 0.38
PHRF1-201ENST00000264555 ADGRF2Q8IZF7 708 aa17.41■□□□□ 0.38
PHRF1-201ENST00000264555 PCDH9Q9HC56 1237 aa17.41■□□□□ 0.38
PHRF1-201ENST00000264555 DDIT4Q9NX09 232 aa17.41■□□□□ 0.38
PHRF1-201ENST00000264555 USP20Q9Y2K6 914 aa17.41■□□□□ 0.38
PHRF1-201ENST00000264555 ORC6Q9Y5N6 252 aa17.41■□□□□ 0.38
PHRF1-201ENST00000264555 KCPQ6ZWJ8 1503 aa17.41■□□□□ 0.38
PHRF1-201ENST00000264555 GPR182O15218 404 aa17.41■□□□□ 0.38
PHRF1-201ENST00000264555 PAEPP09466 180 aa17.41■□□□□ 0.38
PHRF1-201ENST00000264555 RAD23BP54727 409 aa17.41■□□□□ 0.38
PHRF1-201ENST00000264555 MAPRE2Q15555 327 aa17.41■□□□□ 0.38
PHRF1-201ENST00000264555 CYP4F11Q9HBI6 524 aa17.41■□□□□ 0.38
PHRF1-201ENST00000264555 ZNF446Q9NWS9 450 aa17.41■□□□□ 0.38
PHRF1-201ENST00000264555 AP1G2O75843 785 aa17.41■□□□□ 0.38
PHRF1-201ENST00000264555 ZNF286BP0CG31 522 aa17.41■□□□□ 0.38
PHRF1-201ENST00000264555 UBA1P22314 1058 aaKnown RBP17.41■□□□□ 0.38
PHRF1-201ENST00000264555 TNFRSF8P28908 595 aa17.41■□□□□ 0.38
PHRF1-201ENST00000264555 EPHB2P29323 1055 aa17.41■□□□□ 0.38
PHRF1-201ENST00000264555 RPL21P46778 160 aaKnown RBP17.41■□□□□ 0.38
PHRF1-201ENST00000264555 KCNV2Q8TDN2 545 aa17.41■□□□□ 0.38
PHRF1-201ENST00000264555 E2F7Q96AV8 911 aa17.41■□□□□ 0.38
PHRF1-201ENST00000264555 ELMO3Q96BJ8 720 aa17.41■□□□□ 0.38
PHRF1-201ENST00000264555 MAGEB18Q96M61 343 aa17.41■□□□□ 0.38
PHRF1-201ENST00000264555 L3MBTL1Q9Y468 752 aa17.41■□□□□ 0.38
PHRF1-201ENST00000264555 SPEF2Q9C093 1822 aa17.41■□□□□ 0.38
PHRF1-201ENST00000264555 CYB561D2O14569 222 aa17.4■□□□□ 0.38
PHRF1-201ENST00000264555 RIPK2O43353 540 aa17.4■□□□□ 0.38
PHRF1-201ENST00000264555 TRPA1O75762 1119 aa17.4■□□□□ 0.38
PHRF1-201ENST00000264555 F9P00740 461 aa17.4■□□□□ 0.38
PHRF1-201ENST00000264555 ADRB2P07550 413 aa17.4■□□□□ 0.38
PHRF1-201ENST00000264555 KDSRQ06136 332 aa17.4■□□□□ 0.38
PHRF1-201ENST00000264555 DNAJC3Q13217 504 aa17.4■□□□□ 0.38
PHRF1-201ENST00000264555 ITIH4Q14624 930 aa17.4■□□□□ 0.38
PHRF1-201ENST00000264555 FAM71AQ8IYT1 594 aa17.4■□□□□ 0.38
PHRF1-201ENST00000264555 IL31RAQ8NI17 732 aa17.4■□□□□ 0.38
PHRF1-201ENST00000264555 ACTL9Q8TC94 416 aa17.4■□□□□ 0.38
PHRF1-201ENST00000264555 AGR3Q8TD06 166 aa17.4■□□□□ 0.38
PHRF1-201ENST00000264555 TRIM4Q9C037 500 aa17.4■□□□□ 0.38
PHRF1-201ENST00000264555 TGFB1I1O43294 461 aa17.4■□□□□ 0.38
PHRF1-201ENST00000264555 CSDE1O75534 798 aaKnown RBP17.4■□□□□ 0.38
PHRF1-201ENST00000264555 ENO1P06733 434 aaKnown RBP17.4■□□□□ 0.38
PHRF1-201ENST00000264555 EIF4BP23588 611 aaKnown RBP17.4■□□□□ 0.38
PHRF1-201ENST00000264555 ESRRGP62508 458 aa17.4■□□□□ 0.38
PHRF1-201ENST00000264555 SNX17Q15036 470 aa17.4■□□□□ 0.38
PHRF1-201ENST00000264555 TRADDQ15628 312 aa17.4■□□□□ 0.38
PHRF1-201ENST00000264555 GRIK4Q16099 956 aa17.4■□□□□ 0.38
PHRF1-201ENST00000264555 FAXCQ5TGI0 409 aa17.4■□□□□ 0.38
PHRF1-201ENST00000264555 MROH9Q5TGP6 573 aa17.4■□□□□ 0.38
PHRF1-201ENST00000264555 LNX1Q8TBB1 728 aaPredicted RBP17.4■□□□□ 0.38
PHRF1-201ENST00000264555 KAT5Q92993 513 aa17.4■□□□□ 0.38
PHRF1-201ENST00000264555 PABPC5Q96DU9 382 aaKnown RBP17.4■□□□□ 0.38
PHRF1-201ENST00000264555 WDCPQ9H6R7 721 aa17.4■□□□□ 0.38
PHRF1-201ENST00000264555 SARS2Q9NP81 518 aaKnown RBP17.4■□□□□ 0.38
PHRF1-201ENST00000264555 SLC24A2Q9UI40 661 aa17.4■□□□□ 0.38
PHRF1-201ENST00000264555 HIC1Q14526 733 aa17.4■□□□□ 0.38
PHRF1-201ENST00000264555 RGS9BPQ6ZS82 235 aa17.4■□□□□ 0.38
PHRF1-201ENST00000264555 ST13P4Q8IZP2 240 aaPredicted RBP17.4■□□□□ 0.38
PHRF1-201ENST00000264555 GIPC2Q8TF65 315 aa17.4■□□□□ 0.38
PHRF1-201ENST00000264555 ZNF384Q8TF68 577 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms