RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 HNRNPCP07910 306 aaKnown RBP eCLIP15.03■□□□□ -0
SDC1-201ENST00000254351 NELFEP18615 380 aaKnown RBP15.03■□□□□ -0
SDC1-201ENST00000254351 RFX1P22670 979 aa15.03■□□□□ -0
SDC1-201ENST00000254351 MAMLD1Q13495 774 aa15.03■□□□□ -0
SDC1-201ENST00000254351 MAP7Q14244 749 aa15.03■□□□□ -0
SDC1-201ENST00000254351 CYP4A22Q5TCH4 519 aa15.03■□□□□ -0
SDC1-201ENST00000254351 DCUN1D2Q6PH85 259 aa15.03■□□□□ -0
SDC1-201ENST00000254351 RNF111Q6ZNA4 994 aa15.03■□□□□ -0
SDC1-201ENST00000254351 POLNQ7Z5Q5 900 aa15.03■□□□□ -0
SDC1-201ENST00000254351 TMPRSS6Q8IU80 811 aa15.03■□□□□ -0
SDC1-201ENST00000254351 CCDC33Q8N5R6 958 aa15.03■□□□□ -0
SDC1-201ENST00000254351 FAM71DQ8N9W8 422 aa15.03■□□□□ -0
SDC1-201ENST00000254351 C20orf27Q9GZN8 174 aa15.03■□□□□ -0
SDC1-201ENST00000254351 ARFGEF1Q9Y6D6 1849 aa15.02■□□□□ -0
SDC1-201ENST00000254351 G3V3G9 751 aa15.02■□□□□ -0
SDC1-201ENST00000254351 I3L4J1 428 aa15.02■□□□□ -0
SDC1-201ENST00000254351 ALOX15BO15296 676 aa15.02■□□□□ -0
SDC1-201ENST00000254351 UGT1A9O60656 530 aa15.02■□□□□ -0
SDC1-201ENST00000254351 LYPLA1O75608 230 aaPredicted RBP15.02■□□□□ -0
SDC1-201ENST00000254351 TOM1L1O75674 476 aa15.02■□□□□ -0
SDC1-201ENST00000254351 ABHD2P08910 425 aa15.02■□□□□ -0
SDC1-201ENST00000254351 ZNF200P98182 395 aaPredicted RBP15.02■□□□□ -0
SDC1-201ENST00000254351 HSF5Q4G112 596 aaPredicted RBP15.02■□□□□ -0
SDC1-201ENST00000254351 DCAF8Q5TAQ9 597 aa15.02■□□□□ -0
SDC1-201ENST00000254351 RNASEH2BQ5TBB1 312 aaKnown RBP15.02■□□□□ -0
SDC1-201ENST00000254351 CES4AQ5XG92 561 aa15.02■□□□□ -0
SDC1-201ENST00000254351 PPP1R14CQ8TAE6 165 aa15.02■□□□□ -0
SDC1-201ENST00000254351 SENP7Q9BQF6 1050 aa15.02■□□□□ -0
SDC1-201ENST00000254351 KLHL4Q9C0H6 718 aa15.02■□□□□ -0
SDC1-201ENST00000254351 UGT1A7Q9HAW7 530 aa15.02■□□□□ -0
SDC1-201ENST00000254351 UGT1A10Q9HAW8 530 aa15.02■□□□□ -0
SDC1-201ENST00000254351 UGT1A8Q9HAW9 530 aa15.02■□□□□ -0
SDC1-201ENST00000254351 HOMER2Q9NSB8 354 aa15.02■□□□□ -0
SDC1-201ENST00000254351 XPO7Q9UIA9 1087 aaKnown RBP15.02■□□□□ -0
SDC1-201ENST00000254351 COPEO14579 308 aa15.02□□□□□ -0.01
SDC1-201ENST00000254351 ELK3P41970 407 aa15.02□□□□□ -0.01
SDC1-201ENST00000254351 ECE1P42892 770 aa15.02□□□□□ -0.01
SDC1-201ENST00000254351 EN1Q05925 392 aaPredicted RBP15.02□□□□□ -0.01
SDC1-201ENST00000254351 LSAMPQ13449 338 aa15.02□□□□□ -0.01
SDC1-201ENST00000254351 CDC42EP5Q6NZY7 148 aa15.02□□□□□ -0.01
SDC1-201ENST00000254351 MIER3Q7Z3K6 550 aa15.02□□□□□ -0.01
SDC1-201ENST00000254351 APLFQ8IW19 511 aaPredicted RBP15.02□□□□□ -0.01
SDC1-201ENST00000254351 CERS5Q8N5B7 392 aa15.02□□□□□ -0.01
SDC1-201ENST00000254351 PCSK1NQ9UHG2 260 aa15.02□□□□□ -0.01
SDC1-201ENST00000254351 ZNF711Q9Y462 761 aa15.02□□□□□ -0.01
SDC1-201ENST00000254351 PCDHB4Q9Y5E5 795 aa15.02□□□□□ -0.01
SDC1-201ENST00000254351 TRIM49D1C9J1S8 452 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 PROCP04070 461 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 UNGP13051 313 aaPredicted RBP15.01□□□□□ -0.01
SDC1-201ENST00000254351 PRKD1Q15139 912 aaPredicted RBP15.01□□□□□ -0.01
SDC1-201ENST00000254351 ALLCQ8N6M5 410 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 ATP11CQ8NB49 1132 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 FLAD1Q8NFF5 587 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 RSAD2Q8WXG1 361 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 PPP2R3CQ969Q6 453 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 CNBD2Q96M20 576 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 NR1H4Q96RI1 486 aaPredicted RBP15.01□□□□□ -0.01
SDC1-201ENST00000254351 SRPK1Q96SB4 655 aaKnown RBP15.01□□□□□ -0.01
SDC1-201ENST00000254351 LIN28AQ9H9Z2 209 aaKnown RBP15.01□□□□□ -0.01
SDC1-201ENST00000254351 C1orf112Q9NSG2 853 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 PHF24Q9UPV7 400 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 ATAD5Q96QE3 1844 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 DNAJC6O75061 913 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 TMEM63AO94886 807 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 VCLP18206 1134 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 FUT4P22083 530 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 PHBP35232 272 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 GMPRP36959 345 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 NOVP48745 357 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 RNF148Q8N7C7 305 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 AZIN2Q96A70 460 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 TUFT1Q9NNX1 390 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 MYPNQ86TC9 1320 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 KBTBD13C9JR72 458 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 ACOT2P49753 483 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 ACTR3P61158 418 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 JAG1P78504 1218 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 OTUD4Q01804 1114 aaKnown RBP15.01□□□□□ -0.01
SDC1-201ENST00000254351 PDK3Q15120 406 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 PABPC1LQ4VXU2 614 aaKnown RBP15.01□□□□□ -0.01
SDC1-201ENST00000254351 HPS6Q86YV9 775 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 SLF2Q8IX21 1173 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 ACTL9Q8TC94 416 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 DCAKDQ8WVC6 231 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 CPT1BQ92523 772 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 SLITRK1Q96PX8 696 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 WDR11Q9BZH6 1224 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 VPS11Q9H270 941 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 ACSS2Q9NR19 701 aa15.01□□□□□ -0.01
SDC1-201ENST00000254351 MAST2Q6P0Q8 1798 aa15□□□□□ -0.01
SDC1-201ENST00000254351 HNRNPCL1O60812 293 aaKnown RBP15□□□□□ -0.01
SDC1-201ENST00000254351 TM7SF2O76062 418 aa15□□□□□ -0.01
SDC1-201ENST00000254351 GH2P01242 217 aa15□□□□□ -0.01
SDC1-201ENST00000254351 ITGA2BP08514 1039 aa15□□□□□ -0.01
SDC1-201ENST00000254351 RAG1P15918 1043 aa15□□□□□ -0.01
SDC1-201ENST00000254351 HIC1Q14526 733 aa15□□□□□ -0.01
SDC1-201ENST00000254351 R3HDM1Q15032 1099 aaKnown RBP15□□□□□ -0.01
SDC1-201ENST00000254351 ACBD5Q5T8D3 534 aaPredicted RBP15□□□□□ -0.01
SDC1-201ENST00000254351 MROH9Q5TGP6 573 aa15□□□□□ -0.01
SDC1-201ENST00000254351 VWA5B1Q5TIE3 1220 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms