RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 ALG3Q92685 438 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 MTMR12Q9C0I1 747 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 UTP11Q9Y3A2 253 aaKnown RBP9.16□□□□□ -0.94
VPS4B-201ENST00000238497 WDR81Q562E7 1941 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 CASTOR2A6NHX0 329 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 MAP2K7O14733 419 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 PPP1R37O75864 691 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 DDHD2O94830 711 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 SRGAP2BP0DMP2 458 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 MAPTP10636 758 aaKnown RBP9.16□□□□□ -0.94
VPS4B-201ENST00000238497 CTNNA1P35221 906 aaKnown RBP9.16□□□□□ -0.94
VPS4B-201ENST00000238497 SLCO1A2P46721 670 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 HNRNPH2P55795 449 aaKnown RBP9.16□□□□□ -0.94
VPS4B-201ENST00000238497 UBE3AQ05086 875 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 HP1BP3Q5SSJ5 553 aaPredicted RBP9.16□□□□□ -0.94
VPS4B-201ENST00000238497 C1orf220Q5T0J3 134 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 SEL1L2Q5TEA6 688 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 WDR93Q6P2C0 686 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 TAX1BP1Q86VP1 789 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 CEP57Q86XR8 500 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 MAP4K3Q8IVH8 894 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 GJD3Q8N144 294 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 SLC39A11Q8N1S5 342 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 MMGT1Q8N4V1 131 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 UBL4BQ8N7F7 174 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 SMG8Q8ND04 991 aaKnown RBP9.16□□□□□ -0.94
VPS4B-201ENST00000238497 CCDC26Q8TAB7 109 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 EPS8L1Q8TE68 723 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 SPIRE2Q8WWL2 714 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 SYNCQ9H7C4 482 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 TMEM8AQ9HCN3 771 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 NGRNQ9NPE2 291 aaKnown RBP9.16□□□□□ -0.94
VPS4B-201ENST00000238497 CD207Q9UJ71 328 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 TBX10O75333 385 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 TUBBP07437 444 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 TMEM191BP0C7N4 346 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 ALCAMQ13740 583 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 ZNF568Q3ZCX4 644 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 C10orf76Q5T2E6 689 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 HNRNPLLQ8WVV9 542 aaKnown RBP9.16□□□□□ -0.94
VPS4B-201ENST00000238497 ATG4AQ8WYN0 398 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 RNF25Q96BH1 459 aaPredicted RBP9.16□□□□□ -0.94
VPS4B-201ENST00000238497 C18orf8Q96DM3 657 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 IGSF21Q96ID5 467 aa9.16□□□□□ -0.94
VPS4B-201ENST00000238497 GTPBP10A4D1E9 387 aaKnown RBP9.15□□□□□ -0.94
VPS4B-201ENST00000238497 MYO1FO00160 1098 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 ACKR2O00590 384 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 NRP1O14786 923 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 ATP8B1O43520 1251 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 TADA2AO75478 443 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 RECQL4O94761 1208 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 SCP2P22307 547 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 RRM1P23921 792 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 KLRC2P26717 231 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 FLT3P36888 993 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 PRKCIP41743 596 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 ATF7IP2Q5U623 682 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 ZNF516Q92618 1163 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 ZIM3Q96PE6 472 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 ADAM33Q9BZ11 813 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 GPR88Q9GZN0 384 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 UBN1Q9NPG3 1134 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 MIOSQ9NXC5 875 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 CNTNAP2Q9UHC6 1331 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 TCRBV7S2A1N4TA0A589 114 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 B4GALT3O60512 393 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 CST3P01034 146 aaPredicted RBP9.15□□□□□ -0.94
VPS4B-201ENST00000238497 URODP06132 367 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 EFNA5P52803 228 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 NCKAP1LP55160 1127 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 ZSCAN26Q16670 478 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 LEXMQ3ZCV2 418 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 DCUN1D2Q6PH85 259 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 GSTA5Q7RTV2 222 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 C12orf76Q8N812 135 aaPredicted RBP9.15□□□□□ -0.94
VPS4B-201ENST00000238497 LMO3Q8TAP4 145 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 PBKQ96KB5 322 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 B3GALT6Q96L58 329 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 ASIC3Q9UHC3 531 aa9.15□□□□□ -0.94
VPS4B-201ENST00000238497 A0A1B0GUA9 196 aa9.15□□□□□ -0.95
VPS4B-201ENST00000238497 F8W810 466 aa9.15□□□□□ -0.95
VPS4B-201ENST00000238497 TMEM253P0C7T8 217 aa9.15□□□□□ -0.95
VPS4B-201ENST00000238497 MUTP22033 750 aa9.15□□□□□ -0.95
VPS4B-201ENST00000238497 GNA15P30679 374 aa9.15□□□□□ -0.95
VPS4B-201ENST00000238497 LTBRP36941 435 aa9.15□□□□□ -0.95
VPS4B-201ENST00000238497 RAP1GAPP47736 663 aa9.15□□□□□ -0.95
VPS4B-201ENST00000238497 YARSP54577 528 aaKnown RBP9.15□□□□□ -0.95
VPS4B-201ENST00000238497 CDH8P55286 799 aa9.15□□□□□ -0.95
VPS4B-201ENST00000238497 DYNLT1P63172 113 aa9.15□□□□□ -0.95
VPS4B-201ENST00000238497 NCOA4Q13772 614 aa9.15□□□□□ -0.95
VPS4B-201ENST00000238497 PCBP1Q15365 356 aaKnown RBP eCLIP9.15□□□□□ -0.95
VPS4B-201ENST00000238497 AMHR2Q16671 573 aa9.15□□□□□ -0.95
VPS4B-201ENST00000238497 DPY19L2P1Q6NXN4 242 aa9.15□□□□□ -0.95
VPS4B-201ENST00000238497 FOXR1Q6PIV2 292 aa9.15□□□□□ -0.95
VPS4B-201ENST00000238497 MMS22LQ6ZRQ5 1243 aa9.15□□□□□ -0.95
VPS4B-201ENST00000238497 FAM43BQ6ZT52 329 aaPredicted RBP9.15□□□□□ -0.95
VPS4B-201ENST00000238497 TAS1R3Q7RTX0 852 aa9.15□□□□□ -0.95
VPS4B-201ENST00000238497 APBB1IPQ7Z5R6 666 aaPredicted RBP9.15□□□□□ -0.95
VPS4B-201ENST00000238497 ZC3H3Q8IXZ2 948 aaKnown RBP9.15□□□□□ -0.95
VPS4B-201ENST00000238497 FAM71BQ8TC56 605 aa9.15□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms