RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 DNAH14Q0VDD8 3507 aa23.67■■□□□ 1.38
VTI1B-201ENST00000216456 PVALEFA0A1B0GWK0 134 aa23.66■■□□□ 1.38
VTI1B-201ENST00000216456 CHURC1-FNTBB4DL54 471 aa23.66■■□□□ 1.38
VTI1B-201ENST00000216456 CXCL12P48061 93 aa23.66■■□□□ 1.38
VTI1B-201ENST00000216456 FNTBP49356 437 aa23.66■■□□□ 1.38
VTI1B-201ENST00000216456 CCINQ13939 588 aa23.66■■□□□ 1.38
VTI1B-201ENST00000216456 WDR72Q3MJ13 1102 aa23.66■■□□□ 1.38
VTI1B-201ENST00000216456 KMT5BQ4FZB7 885 aa23.66■■□□□ 1.38
VTI1B-201ENST00000216456 HEATR6Q6AI08 1181 aaKnown RBP23.66■■□□□ 1.38
VTI1B-201ENST00000216456 DPH6Q7L8W6 267 aa23.66■■□□□ 1.38
VTI1B-201ENST00000216456 HS2ST1Q7LGA3 356 aa23.66■■□□□ 1.38
VTI1B-201ENST00000216456 CEP57L1Q8IYX8 460 aa23.66■■□□□ 1.38
VTI1B-201ENST00000216456 ARL14EPQ8N8R7 260 aaPredicted RBP23.66■■□□□ 1.38
VTI1B-201ENST00000216456 OR6B3Q8NGW1 331 aa23.66■■□□□ 1.38
VTI1B-201ENST00000216456 SPATA18Q8TC71 538 aa23.66■■□□□ 1.38
VTI1B-201ENST00000216456 TRMT2BQ96GJ1 504 aaKnown RBP23.66■■□□□ 1.38
VTI1B-201ENST00000216456 MYRFLQ96LU7 910 aa23.66■■□□□ 1.38
VTI1B-201ENST00000216456 EPC1Q9H2F5 836 aa23.66■■□□□ 1.38
VTI1B-201ENST00000216456 THG1LQ9NWX6 298 aaKnown RBP23.66■■□□□ 1.38
VTI1B-201ENST00000216456 NXF1Q9UBU9 619 aaKnown RBP23.66■■□□□ 1.38
VTI1B-201ENST00000216456 CFAP45Q9UL16 551 aa23.66■■□□□ 1.38
VTI1B-201ENST00000216456 K7ESF4 209 aa23.65■■□□□ 1.38
VTI1B-201ENST00000216456 CLDN5O00501 218 aa23.65■■□□□ 1.38
VTI1B-201ENST00000216456 EXOC3O60645 756 aa23.65■■□□□ 1.38
VTI1B-201ENST00000216456 SLFN14P0C7P3 912 aa23.65■■□□□ 1.38
VTI1B-201ENST00000216456 PRR29P0C7W0 189 aa23.65■■□□□ 1.38
VTI1B-201ENST00000216456 GRIK1P39086 918 aa23.65■■□□□ 1.38
VTI1B-201ENST00000216456 RAP1GAPP47736 663 aa23.65■■□□□ 1.38
VTI1B-201ENST00000216456 CCR3P51677 355 aa23.65■■□□□ 1.38
VTI1B-201ENST00000216456 CDH8P55286 799 aa23.65■■□□□ 1.38
VTI1B-201ENST00000216456 PLCB2Q00722 1185 aa23.65■■□□□ 1.38
VTI1B-201ENST00000216456 RUNX3Q13761 415 aa23.65■■□□□ 1.38
VTI1B-201ENST00000216456 SPEM1Q8N4L4 309 aa23.65■■□□□ 1.38
VTI1B-201ENST00000216456 FUBP3Q96I24 572 aaKnown RBP eCLIP23.65■■□□□ 1.38
VTI1B-201ENST00000216456 XYLT2Q9H1B5 865 aa23.65■■□□□ 1.38
VTI1B-201ENST00000216456 SMYD3Q9H7B4 428 aa23.65■■□□□ 1.38
VTI1B-201ENST00000216456 NCDNQ9UBB6 729 aa23.65■■□□□ 1.38
VTI1B-201ENST00000216456 LRRIQ3A6PVS8 624 aaPredicted RBP23.64■■□□□ 1.37
VTI1B-201ENST00000216456 DDX6P26196 483 aaKnown RBP eCLIP23.64■■□□□ 1.375e-9■□□□□ 8.9
VTI1B-201ENST00000216456 GNL1P36915 607 aaPredicted RBP23.64■■□□□ 1.37
VTI1B-201ENST00000216456 MAGEA11P43364 429 aa23.64■■□□□ 1.37
VTI1B-201ENST00000216456 DLG4P78352 724 aa23.64■■□□□ 1.37
VTI1B-201ENST00000216456 ZXDBP98169 803 aa23.64■■□□□ 1.37
VTI1B-201ENST00000216456 LRRC32Q14392 662 aa23.64■■□□□ 1.37
VTI1B-201ENST00000216456 TDRD10Q5VZ19 366 aaKnown RBP23.64■■□□□ 1.37
VTI1B-201ENST00000216456 ATL3Q6DD88 541 aa23.64■■□□□ 1.37
VTI1B-201ENST00000216456 FSTL4Q6MZW2 842 aa23.64■■□□□ 1.37
VTI1B-201ENST00000216456 MAMSTRQ6ZN01 415 aa23.64■■□□□ 1.37
VTI1B-201ENST00000216456 C4orf50Q6ZRC1 276 aa23.64■■□□□ 1.37
VTI1B-201ENST00000216456 C12orf56Q8IXR9 622 aa23.64■■□□□ 1.37
VTI1B-201ENST00000216456 MYCBPAPQ8TBZ2 947 aa23.64■■□□□ 1.37
VTI1B-201ENST00000216456 MSANTD3Q96H12 275 aa23.64■■□□□ 1.37
VTI1B-201ENST00000216456 ZNF518BQ9C0D4 1074 aa23.64■■□□□ 1.37
VTI1B-201ENST00000216456 SNX25Q9H3E2 840 aa23.64■■□□□ 1.37
VTI1B-201ENST00000216456 GCNT4Q9P109 453 aa23.64■■□□□ 1.37
VTI1B-201ENST00000216456 WNT6Q9Y6F9 365 aa23.64■■□□□ 1.37
VTI1B-201ENST00000216456 F8VP50 259 aa23.63■■□□□ 1.37
VTI1B-201ENST00000216456 CKMP06732 381 aa23.63■■□□□ 1.37
VTI1B-201ENST00000216456 ZNF77Q15935 545 aa23.63■■□□□ 1.37
VTI1B-201ENST00000216456 SDCBP2Q9H190 292 aa23.63■■□□□ 1.37
VTI1B-201ENST00000216456 EXOC1Q9NV70 894 aa23.63■■□□□ 1.37
VTI1B-201ENST00000216456 UXTQ9UBK9 157 aaPredicted RBP23.63■■□□□ 1.37
VTI1B-201ENST00000216456 ZNF638Q14966 1978 aaKnown RBP23.62■■□□□ 1.37
VTI1B-201ENST00000216456 SCAMP3O14828 347 aaKnown RBP23.62■■□□□ 1.37
VTI1B-201ENST00000216456 HRO43593 1189 aa23.62■■□□□ 1.37
VTI1B-201ENST00000216456 EGFP01133 1207 aa23.62■■□□□ 1.37
VTI1B-201ENST00000216456 PTPN1P18031 435 aaKnown RBP23.62■■□□□ 1.37
VTI1B-201ENST00000216456 PXNP49023 591 aaPredicted RBP23.62■■□□□ 1.37
VTI1B-201ENST00000216456 TNNC1P63316 161 aa23.62■■□□□ 1.37
VTI1B-201ENST00000216456 TRPC3Q13507 836 aa23.62■■□□□ 1.37
VTI1B-201ENST00000216456 MTF1Q14872 753 aa23.62■■□□□ 1.37
VTI1B-201ENST00000216456 SCARA5Q6ZMJ2 495 aa23.62■■□□□ 1.37
VTI1B-201ENST00000216456 B3GNT5Q9BYG0 378 aa23.62■■□□□ 1.37
VTI1B-201ENST00000216456 LINC00597Q9H2U6 94 aa23.62■■□□□ 1.37
VTI1B-201ENST00000216456 KCTD10Q9H3F6 313 aa23.62■■□□□ 1.37
VTI1B-201ENST00000216456 PARD6AQ9NPB6 346 aa23.62■■□□□ 1.37
VTI1B-201ENST00000216456 HPSEQ9Y251 543 aa23.62■■□□□ 1.37
VTI1B-201ENST00000216456 GTF3C3Q9Y5Q9 886 aa23.62■■□□□ 1.37
VTI1B-201ENST00000216456 TRAV19A0A0A6YYK7 116 aa23.61■■□□□ 1.37
VTI1B-201ENST00000216456 ANTXRLA6NF34 631 aa23.61■■□□□ 1.37
VTI1B-201ENST00000216456 PHACTR2O75167 634 aa23.61■■□□□ 1.37
VTI1B-201ENST00000216456 TACC1O75410 805 aa23.61■■□□□ 1.37
VTI1B-201ENST00000216456 VNN1O95497 513 aa23.61■■□□□ 1.37
VTI1B-201ENST00000216456 SNRPFP62306 86 aaKnown RBP23.61■■□□□ 1.37
VTI1B-201ENST00000216456 FAM160A1Q05DH4 1040 aa23.61■■□□□ 1.37
VTI1B-201ENST00000216456 IFRD2Q12894 506 aaPredicted RBP23.61■■□□□ 1.37
VTI1B-201ENST00000216456 USP4Q13107 963 aa23.61■■□□□ 1.37
VTI1B-201ENST00000216456 ORC1Q13415 861 aa23.61■■□□□ 1.37
VTI1B-201ENST00000216456 BIRC3Q13489 604 aa23.61■■□□□ 1.37
VTI1B-201ENST00000216456 ZNF268Q14587 947 aaPredicted RBP23.61■■□□□ 1.37
VTI1B-201ENST00000216456 TMEM196Q5HYL7 178 aa23.61■■□□□ 1.37
VTI1B-201ENST00000216456 DGKKQ5KSL6 1271 aa23.61■■□□□ 1.37
VTI1B-201ENST00000216456 PRR23BQ6ZRT6 265 aa23.61■■□□□ 1.37
VTI1B-201ENST00000216456 SH3RF2Q8TEC5 729 aa23.61■■□□□ 1.37
VTI1B-201ENST00000216456 PARD3BQ8TEW8 1205 aa23.61■■□□□ 1.37
VTI1B-201ENST00000216456 SPATA32Q96LK8 384 aa23.61■■□□□ 1.37
VTI1B-201ENST00000216456 IER2Q9BTL4 223 aa23.61■■□□□ 1.37
VTI1B-201ENST00000216456 KIF9Q9HAQ2 790 aa23.61■■□□□ 1.37
VTI1B-201ENST00000216456 UTP3Q9NQZ2 479 aaKnown RBP eCLIP23.61■■□□□ 1.37
VTI1B-201ENST00000216456 DMAC2Q9NW81 257 aa23.61■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms