RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 NYXQ9GZU5 481 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 COPRSQ9NQ92 184 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 BCAP29Q9UHQ4 241 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 ASXL3Q9C0F0 2248 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 KPNA3O00505 521 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 PSMA7O14818 248 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 PIAS2O75928 621 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 PRAMEF12O95522 483 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 TCEA1P23193 301 aaKnown RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 EPHB1P54762 984 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 UBE2KP61086 200 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 NCF4Q15080 339 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 LRIT3Q3SXY7 679 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 CYB5R2Q6BCY4 276 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 C3orf33Q6P1S2 294 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 ADAMTS19Q8TE59 1207 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 KCNN1Q92952 543 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 ADAD1Q96M93 576 aaKnown RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 SPATA13Q96N96 652 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 FAM213AQ9BRX8 229 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 IGFLR1Q9H665 355 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 DNAJC18Q9H819 358 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 ARPP21Q9UBL0 812 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 PNMA6FA0A0J9YX94 578 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 BTBD17A6NE02 478 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 RAB3DO95716 219 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 CSTF2P33240 577 aaKnown RBP eCLIP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 ATP1A2P50993 1020 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 ARSEP51690 589 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 FAM69AQ5T7M9 428 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 METTL21CQ5VZV1 264 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 LDHAL6AQ6ZMR3 332 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 SMIM15Q7Z3B0 74 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 SRFBP1Q8NEF9 429 aaKnown RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 BAP1Q92560 729 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 FBXO32Q969P5 355 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 MUL1Q969V5 352 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 ZUFSPQ96AP4 578 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 MAD2L2Q9UI95 211 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 ESPL1Q14674 2120 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 ADD1P35611 737 aaKnown RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 BTKQ06187 659 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 TYRO3Q06418 890 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 PHLDB3Q6NSJ2 640 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 OTOP3Q7RTS5 596 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 PHTF1Q9UMS5 762 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 MAFBQ9Y5Q3 323 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 GPC6Q9Y625 555 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 IDH3BO43837 385 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 INHBAP08476 426 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 SPARCL1Q14515 664 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 RUNDC3AQ59EK9 446 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 CACHD1Q5VU97 1274 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 CAMK1DQ8IU85 385 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 RHPN2Q8IUC4 686 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 DTX3Q8N9I9 347 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 LEMD2Q8NC56 503 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 SETD6Q8TBK2 473 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 WASH6PQ9NQA3 447 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 TLR8Q9NR97 1041 aaKnown RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 VSX1Q9NZR4 365 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 RTCBQ9Y3I0 505 aaKnown RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 SPAG7O75391 227 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 BCRP11274 1271 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 RAG1P15918 1043 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 GRK3P35626 688 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 SSTP61278 116 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 PPP2R2BQ00005 443 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 ZNF177Q13360 481 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 TRIM67Q6ZTA4 783 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 SDCCAG3Q96C92 435 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 ZNF717Q9BY31 904 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 OXCT2Q9BYC2 517 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 MOCS1Q9NZB8 636 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 ARHGAP42A6NI28 874 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 CALB2P22676 271 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 ME1P48163 572 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 FNTAP49354 379 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 BEND4Q6ZU67 534 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 THEMISQ8N1K5 641 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 ZNF565Q8N9K5 539 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 ZBTB38Q8NAP3 1195 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 NOA1Q8NC60 698 aaKnown RBP3.72□□□□□ -1.81
SCN1A-221ENST00000641996 BCAS4Q8TDM0 211 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 FRS2Q8WU20 508 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 MED30Q96HR3 178 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 SLC29A1Q99808 456 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 SRCIN1Q9C0H9 1055 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 LRP2BPQ9P2M1 347 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 VPS51Q9UID3 782 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 PPT2Q9UMR5 302 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 POLIQ9UNA4 740 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 NOD1Q9Y239 953 aa3.72□□□□□ -1.81
SCN1A-221ENST00000641996 DLG5Q8TDM6 1919 aa3.71□□□□□ -1.81
SCN1A-221ENST00000641996 YWHAEP62258 255 aaKnown RBP3.71□□□□□ -1.81
SCN1A-221ENST00000641996 TSGA10IPQ3SY00 556 aa3.71□□□□□ -1.81
SCN1A-221ENST00000641996 ZNF654Q8IZM8 581 aa3.71□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms