RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 TADA3O75528 432 aa20.86■□□□□ 0.93
CLN3-262ENST00000637699 KCNK5O95279 499 aa20.86■□□□□ 0.93
CLN3-262ENST00000637699 ITGB3P05106 788 aa20.86■□□□□ 0.93
CLN3-262ENST00000637699 LONP1P36776 959 aaKnown RBP20.86■□□□□ 0.93
CLN3-262ENST00000637699 PNPLA4P41247 253 aa20.86■□□□□ 0.93
CLN3-262ENST00000637699 WNT7BP56706 349 aa20.86■□□□□ 0.93
CLN3-262ENST00000637699 RPL10AP62906 217 aaKnown RBP20.86■□□□□ 0.93
CLN3-262ENST00000637699 POU5F1Q01860 360 aaKnown RBP20.86■□□□□ 0.93
CLN3-262ENST00000637699 FAM160A1Q05DH4 1040 aa20.86■□□□□ 0.93
CLN3-262ENST00000637699 POSTNQ15063 836 aa20.86■□□□□ 0.93
CLN3-262ENST00000637699 ELF2Q15723 593 aa20.86■□□□□ 0.93
CLN3-262ENST00000637699 SYT13Q7L8C5 426 aa20.86■□□□□ 0.93
CLN3-262ENST00000637699 ZNF720Q7Z2F6 126 aa20.86■□□□□ 0.93
CLN3-262ENST00000637699 SFR1Q86XK3 245 aa20.86■□□□□ 0.93
CLN3-262ENST00000637699 NT5DC4Q86YG4 428 aa20.86■□□□□ 0.93
CLN3-262ENST00000637699 EZH1Q92800 747 aaPredicted RBP20.86■□□□□ 0.93
CLN3-262ENST00000637699 CD101Q93033 1021 aa20.86■□□□□ 0.93
CLN3-262ENST00000637699 TMX3Q96JJ7 454 aa20.86■□□□□ 0.93
CLN3-262ENST00000637699 SLC22A12Q96S37 553 aa20.86■□□□□ 0.93
CLN3-262ENST00000637699 FAM213AQ9BRX8 229 aa20.86■□□□□ 0.93
CLN3-262ENST00000637699 LSM14BQ9BX40 385 aaKnown RBP20.86■□□□□ 0.93
CLN3-262ENST00000637699 UXTQ9UBK9 157 aaPredicted RBP20.86■□□□□ 0.93
CLN3-262ENST00000637699 GTF3C4Q9UKN8 822 aa20.86■□□□□ 0.93
CLN3-262ENST00000637699 L1RE1Q9UN81 338 aa20.86■□□□□ 0.93
CLN3-262ENST00000637699 WNT6Q9Y6F9 365 aa20.86■□□□□ 0.93
CLN3-262ENST00000637699 FRYQ5TBA9 3013 aa20.86■□□□□ 0.93
CLN3-262ENST00000637699 HUS1O60921 280 aa20.85■□□□□ 0.93
CLN3-262ENST00000637699 NOL4O94818 638 aa20.85■□□□□ 0.93
CLN3-262ENST00000637699 APBB3O95704 486 aa20.85■□□□□ 0.93
CLN3-262ENST00000637699 CKMP06732 381 aa20.85■□□□□ 0.93
CLN3-262ENST00000637699 DDIT3P35638 169 aa20.85■□□□□ 0.93
CLN3-262ENST00000637699 IFNAR2P48551 515 aa20.85■□□□□ 0.93
CLN3-262ENST00000637699 SHC2P98077 582 aa20.85■□□□□ 0.93
CLN3-262ENST00000637699 CREB5Q02930 508 aa20.85■□□□□ 0.93
CLN3-262ENST00000637699 KCNA1Q09470 495 aa20.85■□□□□ 0.93
CLN3-262ENST00000637699 DMC1Q14565 340 aa20.85■□□□□ 0.93
CLN3-262ENST00000637699 CCDC142Q17RM4 750 aa20.85■□□□□ 0.93
CLN3-262ENST00000637699 SCARA3Q6AZY7 606 aa20.85■□□□□ 0.93
CLN3-262ENST00000637699 ZSWIM2Q8NEG5 633 aa20.85■□□□□ 0.93
CLN3-262ENST00000637699 OSCP1Q8WVF1 389 aa20.85■□□□□ 0.93
CLN3-262ENST00000637699 SAAL1Q96ER3 474 aa20.85■□□□□ 0.93
CLN3-262ENST00000637699 ACBD6Q9BR61 282 aa20.85■□□□□ 0.93
CLN3-262ENST00000637699 INVSQ9Y283 1065 aa20.85■□□□□ 0.93
CLN3-262ENST00000637699 TRAV19A0A0A6YYK7 116 aa20.84■□□□□ 0.93
CLN3-262ENST00000637699 RHOBTB1O94844 696 aa20.84■□□□□ 0.93
CLN3-262ENST00000637699 USP17L7P0C7H9 530 aa20.84■□□□□ 0.93
CLN3-262ENST00000637699 GBP1P32455 592 aa20.84■□□□□ 0.93
CLN3-262ENST00000637699 DGKEP52429 567 aa20.84■□□□□ 0.93
CLN3-262ENST00000637699 MYL7Q01449 175 aa20.84■□□□□ 0.93
CLN3-262ENST00000637699 ZNF77Q15935 545 aa20.84■□□□□ 0.93
CLN3-262ENST00000637699 C8orf34Q49A92 452 aa20.84■□□□□ 0.93
CLN3-262ENST00000637699 INTS6LQ5JSJ4 861 aaKnown RBP20.84■□□□□ 0.93
CLN3-262ENST00000637699 PSAPL1Q6NUJ1 521 aa20.84■□□□□ 0.93
CLN3-262ENST00000637699 C1orf127Q8N9H9 656 aa20.84■□□□□ 0.93
CLN3-262ENST00000637699 LEO1Q8WVC0 666 aaPredicted RBP20.84■□□□□ 0.93
CLN3-262ENST00000637699 ATP2A3Q93084 1043 aa20.84■□□□□ 0.93
CLN3-262ENST00000637699 HVCN1Q96D96 273 aa20.84■□□□□ 0.93
CLN3-262ENST00000637699 TRMT2BQ96GJ1 504 aaKnown RBP20.84■□□□□ 0.93
CLN3-262ENST00000637699 FAM84AQ96KN4 292 aa20.84■□□□□ 0.93
CLN3-262ENST00000637699 MRPL44Q9H9J2 332 aaKnown RBP20.84■□□□□ 0.93
CLN3-262ENST00000637699 ABCB6Q9NP58 842 aa20.84■□□□□ 0.93
CLN3-262ENST00000637699 TBC1D7Q9P0N9 293 aa20.84■□□□□ 0.93
CLN3-262ENST00000637699 HCRTO43612 131 aa20.83■□□□□ 0.93
CLN3-262ENST00000637699 CAVIN2O95810 425 aa20.83■□□□□ 0.93
CLN3-262ENST00000637699 BMP15O95972 392 aa20.83■□□□□ 0.93
CLN3-262ENST00000637699 RABEP1Q15276 862 aa20.83■□□□□ 0.93
CLN3-262ENST00000637699 SF3A1Q15459 793 aaKnown RBP20.83■□□□□ 0.93
CLN3-262ENST00000637699 EML3Q32P44 896 aa20.83■□□□□ 0.93
CLN3-262ENST00000637699 OSTM1Q86WC4 334 aa20.83■□□□□ 0.93
CLN3-262ENST00000637699 SPATA2LQ8IUW3 424 aaPredicted RBP20.83■□□□□ 0.93
CLN3-262ENST00000637699 SCN4BQ8IWT1 228 aa20.83■□□□□ 0.93
CLN3-262ENST00000637699 CSGALNACT2Q8N6G5 542 aa20.83■□□□□ 0.93
CLN3-262ENST00000637699 ARL14EPQ8N8R7 260 aaPredicted RBP20.83■□□□□ 0.93
CLN3-262ENST00000637699 CACTINQ8WUQ7 758 aaKnown RBP20.83■□□□□ 0.93
CLN3-262ENST00000637699 ACDQ96AP0 544 aa20.83■□□□□ 0.93
CLN3-262ENST00000637699 EPSTI1Q96J88 318 aa20.83■□□□□ 0.93
CLN3-262ENST00000637699 MYRFLQ96LU7 910 aa20.83■□□□□ 0.93
CLN3-262ENST00000637699 PKMYT1Q99640 499 aa20.83■□□□□ 0.93
CLN3-262ENST00000637699 EDEM2Q9BV94 578 aa20.83■□□□□ 0.93
CLN3-262ENST00000637699 LINC00597Q9H2U6 94 aa20.83■□□□□ 0.93
CLN3-262ENST00000637699 TMEM206Q9H813 350 aa20.83■□□□□ 0.93
CLN3-262ENST00000637699 EBF1Q9UH73 591 aa20.83■□□□□ 0.93
CLN3-262ENST00000637699 C4orf47A7E2U8 309 aa20.82■□□□□ 0.92
CLN3-262ENST00000637699 PPP1R37O75864 691 aa20.82■□□□□ 0.92
CLN3-262ENST00000637699 KRT19P08727 400 aa20.82■□□□□ 0.92
CLN3-262ENST00000637699 USP4Q13107 963 aa20.82■□□□□ 0.92
CLN3-262ENST00000637699 LARP1BQ659C4 914 aaKnown RBP20.82■□□□□ 0.92
CLN3-262ENST00000637699 USP49Q70CQ1 688 aa20.82■□□□□ 0.92
CLN3-262ENST00000637699 BRSK2Q8IWQ3 736 aa20.82■□□□□ 0.92
CLN3-262ENST00000637699 TMEM86AQ8N2M4 240 aa20.82■□□□□ 0.92
CLN3-262ENST00000637699 SH3RF2Q8TEC5 729 aa20.82■□□□□ 0.92
CLN3-262ENST00000637699 NOC3LQ8WTT2 800 aaKnown RBP20.82■□□□□ 0.92
CLN3-262ENST00000637699 STRA6Q9BX79 667 aa20.82■□□□□ 0.92
CLN3-262ENST00000637699 RBAKQ9NYW8 714 aaPredicted RBP20.82■□□□□ 0.92
CLN3-262ENST00000637699 EXOC7Q9UPT5 735 aa20.82■□□□□ 0.92
CLN3-262ENST00000637699 SMC3Q9UQE7 1217 aa20.82■□□□□ 0.92
CLN3-262ENST00000637699 SNX9Q9Y5X1 595 aa20.82■□□□□ 0.92
CLN3-262ENST00000637699 BCLAF3A2AJT9 711 aaKnown RBP20.81■□□□□ 0.92
CLN3-262ENST00000637699 GOLGA8IPA6NC78 632 aa20.81■□□□□ 0.92
CLN3-262ENST00000637699 C2orf78A6NCI8 922 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms