RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 TOP1MTQ969P6 601 aa19.49■□□□□ 0.71
CLN3-254ENST00000637050 SYT15Q9BQS2 421 aa19.49■□□□□ 0.71
CLN3-254ENST00000637050 CRTAC1Q9NQ79 661 aa19.49■□□□□ 0.71
CLN3-254ENST00000637050 SNX12Q9UMY4 172 aa19.49■□□□□ 0.71
CLN3-254ENST00000637050 PRG3Q9Y2Y8 225 aaPredicted RBP19.49■□□□□ 0.71
CLN3-254ENST00000637050 TRAPPC3O43617 180 aa19.48■□□□□ 0.71
CLN3-254ENST00000637050 NCK2O43639 380 aa19.48■□□□□ 0.71
CLN3-254ENST00000637050 CAPN15O75808 1086 aa19.48■□□□□ 0.71
CLN3-254ENST00000637050 UPP2O95045 317 aa19.48■□□□□ 0.71
CLN3-254ENST00000637050 ALDH2P05091 517 aa19.48■□□□□ 0.71
CLN3-254ENST00000637050 BCAT1P54687 386 aa19.48■□□□□ 0.71
CLN3-254ENST00000637050 PEX26Q7Z412 305 aa19.48■□□□□ 0.71
CLN3-254ENST00000637050 FUKQ8N0W3 1084 aa19.48■□□□□ 0.71
CLN3-254ENST00000637050 SLC2A14Q8TDB8 520 aa19.48■□□□□ 0.71
CLN3-254ENST00000637050 STK32AQ8WU08 396 aa19.48■□□□□ 0.71
CLN3-254ENST00000637050 C18orf8Q96DM3 657 aa19.48■□□□□ 0.71
CLN3-254ENST00000637050 ACBD6Q9BR61 282 aa19.48■□□□□ 0.71
CLN3-254ENST00000637050 IL23AQ9NPF7 189 aa19.48■□□□□ 0.71
CLN3-254ENST00000637050 HCSTQ9UBK5 93 aa19.48■□□□□ 0.71
CLN3-254ENST00000637050 COL4A6Q14031 1691 aa19.47■□□□□ 0.71
CLN3-254ENST00000637050 AMHP03971 560 aa19.47■□□□□ 0.71
CLN3-254ENST00000637050 ERBB2P04626 1255 aa19.47■□□□□ 0.71
CLN3-254ENST00000637050 ADORA2BP29275 332 aa19.47■□□□□ 0.71
CLN3-254ENST00000637050 TKTP29401 623 aaKnown RBP19.47■□□□□ 0.71
CLN3-254ENST00000637050 SLC11A1P49279 550 aa19.47■□□□□ 0.71
CLN3-254ENST00000637050 BST2Q10589 180 aaKnown RBP19.47■□□□□ 0.71
CLN3-254ENST00000637050 CCDC142Q17RM4 750 aa19.47■□□□□ 0.71
CLN3-254ENST00000637050 CYP4A22Q5TCH4 519 aa19.47■□□□□ 0.71
CLN3-254ENST00000637050 OVOS1Q6IE37 1185 aa19.47■□□□□ 0.71
CLN3-254ENST00000637050 C3orf20Q8ND61 904 aa19.47■□□□□ 0.71
CLN3-254ENST00000637050 COLEC11Q9BWP8 271 aa19.47■□□□□ 0.71
CLN3-254ENST00000637050 MARCH5Q9NX47 278 aa19.47■□□□□ 0.71
CLN3-254ENST00000637050 WDR35Q9P2L0 1181 aa19.47■□□□□ 0.71
CLN3-254ENST00000637050 TJP2Q9UDY2 1190 aa19.47■□□□□ 0.71
CLN3-254ENST00000637050 ANAPC7Q9UJX3 599 aa19.47■□□□□ 0.71
CLN3-254ENST00000637050 ADAM28Q9UKQ2 775 aa19.47■□□□□ 0.71
CLN3-254ENST00000637050 HYOU1Q9Y4L1 999 aa19.47■□□□□ 0.71
CLN3-254ENST00000637050 ALG6Q9Y672 507 aa19.47■□□□□ 0.71
CLN3-254ENST00000637050 ALPK3Q96L96 1907 aa19.47■□□□□ 0.71
CLN3-254ENST00000637050 TADA2AO75478 443 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 BAIAP3O94812 1187 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 GALTP07902 379 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 WDR5P61964 334 aaKnown RBP19.46■□□□□ 0.71
CLN3-254ENST00000637050 PDE4CQ08493 712 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 ZNF268Q14587 947 aaPredicted RBP19.46■□□□□ 0.71
CLN3-254ENST00000637050 MESDQ14696 234 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 MDH1BQ5I0G3 518 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 PPP1R15BQ5SWA1 713 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 DNAJC24Q6P3W2 148 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 PAQR9Q6ZVX9 377 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 XYLT1Q86Y38 959 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 MYCBPAPQ8TBZ2 947 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 BTBD6Q96KE9 485 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 SLC4A5Q9BY07 1137 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 AMFRQ9UKV5 643 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 PACSIN2Q9UNF0 486 aaPredicted RBP19.46■□□□□ 0.71
CLN3-254ENST00000637050 FAN1Q9Y2M0 1017 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 MYBPHLA2RUH7 354 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 TULP2O00295 520 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 ACRP10323 421 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 TCP1P17987 556 aaKnown RBP19.46■□□□□ 0.71
CLN3-254ENST00000637050 RPL34P49207 117 aaKnown RBP19.46■□□□□ 0.71
CLN3-254ENST00000637050 DEFB103AP81534 67 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 PLCB3Q01970 1234 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 TAP1Q03518 808 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 RPS6KA1Q15418 735 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 PMF1Q6P1K2 205 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 FAM171BQ6P995 826 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 THEM5Q8N1Q8 247 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 FEZF2Q8TBJ5 459 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 IPO4Q8TEX9 1081 aaKnown RBP19.46■□□□□ 0.71
CLN3-254ENST00000637050 ZNF689Q96CS4 500 aaPredicted RBP19.46■□□□□ 0.71
CLN3-254ENST00000637050 HES6Q96HZ4 224 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 OSBPL9Q96SU4 736 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 PKMYT1Q99640 499 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 B3GNT5Q9BYG0 378 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 TRIM7Q9C029 511 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 MIS12Q9H081 205 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 SYNCQ9H7C4 482 aa19.46■□□□□ 0.71
CLN3-254ENST00000637050 TMEM191CA6NGB0 347 aa19.45■□□□□ 0.7
CLN3-254ENST00000637050 SYN3O14994 580 aa19.45■□□□□ 0.7
CLN3-254ENST00000637050 SRGAP2O75044 1071 aa19.45■□□□□ 0.7
CLN3-254ENST00000637050 OAZ2O95190 189 aa19.45■□□□□ 0.7
CLN3-254ENST00000637050 YWHAHQ04917 246 aaPredicted RBP19.45■□□□□ 0.7
CLN3-254ENST00000637050 WHAMMP3Q1A5X7 153 aa19.45■□□□□ 0.7
CLN3-254ENST00000637050 INTS6LQ5JSJ4 861 aaKnown RBP19.45■□□□□ 0.7
CLN3-254ENST00000637050 TMEM110Q86TL2 294 aa19.45■□□□□ 0.7
CLN3-254ENST00000637050 MCRS1Q96EZ8 462 aa19.45■□□□□ 0.7
CLN3-254ENST00000637050 DUSP16Q9BY84 665 aa19.45■□□□□ 0.7
CLN3-254ENST00000637050 CWH43Q9H720 699 aa19.45■□□□□ 0.7
CLN3-254ENST00000637050 RC3H2Q9HBD1 1191 aaKnown RBP19.45■□□□□ 0.7
CLN3-254ENST00000637050 CYLDQ9NQC7 956 aa19.45■□□□□ 0.7
CLN3-254ENST00000637050 ST7Q9NRC1 585 aa19.45■□□□□ 0.7
CLN3-254ENST00000637050 PCDH10Q9P2E7 1040 aa19.45■□□□□ 0.7
CLN3-254ENST00000637050 PRKAG2Q9UGJ0 569 aa19.45■□□□□ 0.7
CLN3-254ENST00000637050 TMEM110-MUSTN1A8MSY1 372 aa19.44■□□□□ 0.7
CLN3-254ENST00000637050 E5RJQ4 531 aa19.44■□□□□ 0.7
CLN3-254ENST00000637050 MYO1FO00160 1098 aa19.44■□□□□ 0.7
CLN3-254ENST00000637050 CLDN5O00501 218 aa19.44■□□□□ 0.7
CLN3-254ENST00000637050 GJB6O95452 261 aa19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms