RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	MSLNL	Q96KJ4	702 aa		3.78	□□□□□ -1.8
CNOT1-223	ENST00000628857	C8orf48	Q96LL4	319 aa		3.78	□□□□□ -1.8
CNOT1-223	ENST00000628857	SLC46A1	Q96NT5	459 aa		3.78	□□□□□ -1.8
CNOT1-223	ENST00000628857	TPSD1	Q9BZJ3	242 aa		3.78	□□□□□ -1.8
CNOT1-223	ENST00000628857	LRRC27	Q9C0I9	530 aa		3.78	□□□□□ -1.8
CNOT1-223	ENST00000628857	RIOX1	Q9H6W3	641 aa		3.78	□□□□□ -1.8
CNOT1-223	ENST00000628857	SMURF2	Q9HAU4	748 aa		3.78	□□□□□ -1.8
CNOT1-223	ENST00000628857	A1CF	Q9NQ94	594 aa	Known RBP	3.78	□□□□□ -1.8
CNOT1-223	ENST00000628857	SEMA4G	Q9NTN9	838 aa		3.78	□□□□□ -1.8
CNOT1-223	ENST00000628857	SERTAD4	Q9NUC0	356 aa		3.78	□□□□□ -1.8
CNOT1-223	ENST00000628857	CPA4	Q9UI42	421 aa		3.78	□□□□□ -1.8
CNOT1-223	ENST00000628857	TLK1	Q9UKI8	766 aa		3.78	□□□□□ -1.8
CNOT1-223	ENST00000628857	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	3.78	□□□□□ -1.8
CNOT1-223	ENST00000628857	MBD3L4	A6NDZ8	208 aa	Predicted RBP	3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	MBD3L3	A6NE82	208 aa	Predicted RBP	3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	ADM5	C9JUS6	153 aa		3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	KIAA0355	O15063	1070 aa		3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	KIF3B	O15066	747 aa		3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	SLC16A3	O15427	465 aa	Known RBP	3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	VPS4B	O75351	444 aa		3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	MYF5	P13349	255 aa		3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	FBL	P22087	321 aa	Known RBP	3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	ZNF134	P52741	427 aa		3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	UCP3	P55916	312 aa		3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	CTBP1	Q13363	440 aa		3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	MGAT5B	Q3V5L5	792 aa		3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	RNF220	Q5VTB9	566 aa		3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	ANKRD16	Q6P6B7	361 aa		3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	DGKH	Q86XP1	1220 aa		3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	FMNL3	Q8IVF7	1028 aa		3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	DNAJC10	Q8IXB1	793 aa		3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	DNAJC5G	Q8N7S2	189 aa		3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	TOR1AIP2	Q8NFQ8	470 aa		3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	TSR2	Q969E8	191 aa	Known RBP	3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	RSPRY1	Q96DX4	576 aa		3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	UROC1	Q96N76	676 aa		3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	P2RX7	Q99572	595 aa	Known RBP	3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	ACTRT3	Q9BYD9	372 aa		3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	BTBD1	Q9H0C5	482 aa		3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	DHX36	Q9H2U1	1008 aa	Known RBP	3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	DDX21	Q9NR30	783 aa	Known RBP eCLIP	3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	MRPS18A	Q9NVS2	196 aa	Known RBP	3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	ZSCAN32	Q9NX65	697 aa		3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	KLHL42	Q9P2K6	505 aa		3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	COL11A2	P13942	1736 aa	Predicted RBP	3.77	□□□□□ -1.81
CNOT1-223	ENST00000628857	CFAP69	A5D8W1	941 aa		3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	TRIM43B	A6NCK2	446 aa		3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	VSTM5	A8MXK1	200 aa		3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	TPP1	O14773	563 aa		3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	TBX3	O15119	743 aa		3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	CCP110	O43303	1012 aa		3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	URI1	O94763	535 aa	Predicted RBP	3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	TJP3	O95049	919 aa		3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	NUDT3	O95989	172 aa		3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	KIT	P10721	976 aa		3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	ZFX	P17010	805 aa	Predicted RBP	3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	RHCE	P18577	417 aa		3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	ALDH9A1	P49189	494 aa		3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	DGKE	P52429	567 aa		3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	MAPK10	P53779	464 aa		3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	NANOS3	P60323	173 aa	Known RBP	3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	RHD	Q02161	417 aa		3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	SLC13A2	Q13183	592 aa		3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	SEMA5A	Q13591	1074 aa		3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	CNGA2	Q16280	664 aa		3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	ZNF362	Q5T0B9	420 aa	Predicted RBP	3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	SWSAP1	Q6NVH7	229 aa		3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	TMED8	Q6PL24	325 aa	Predicted RBP	3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	APOA5	Q6Q788	366 aa		3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	ZNF551	Q7Z340	670 aa	Predicted RBP	3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	KRT78	Q8N1N4	520 aa		3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	LRTOMT	Q8WZ04	291 aa		3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	FKBP10	Q96AY3	582 aa		3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	TRIM43	Q96BQ3	446 aa	Predicted RBP	3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	NT5C1B	Q96P26	610 aa		3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	STRBP	Q96SI9	672 aa	Known RBP	3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	KIAA1586	Q9HCI6	787 aa		3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	STAP2	Q9UGK3	403 aa		3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	NDRG4	Q9ULP0	352 aa	Known RBP	3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	SSX2IP	Q9Y2D8	614 aa		3.76	□□□□□ -1.81
CNOT1-223	ENST00000628857	USP19	O94966	1318 aa		3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	FRMPD2	Q68DX3	1309 aa	Predicted RBP	3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857		A6NNZ2	444 aa		3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	VWC2L	B2RUY7	222 aa		3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	MGEA5	O60502	916 aa		3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	TTLL1	O95922	423 aa		3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	PTMS	P20962	102 aa		3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	ITPKB	P27987	946 aa		3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	SLC7A1	P30825	629 aa		3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	ATXN1	P54253	815 aa	Known RBP	3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	LILRA4	P59901	499 aa		3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	SET	Q01105	290 aa	Predicted RBP	3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	FMO1	Q01740	532 aa		3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	MYO1E	Q12965	1108 aa		3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	GRM3	Q14832	879 aa		3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	INSC	Q1MX18	579 aa		3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	KIAA0753	Q2KHM9	967 aa		3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	VPS53	Q5VIR6	699 aa		3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	TSHZ1	Q6ZSZ6	1077 aa		3.75	□□□□□ -1.81
CNOT1-223	ENST00000628857	C11orf96	Q7Z7L8	435 aa		3.75	□□□□□ -1.81

Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms