RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 CDKAL1Q5VV42 579 aa19.28■□□□□ 0.68
CLN3-239ENST00000628023 C4orf50Q6ZRC1 276 aa19.28■□□□□ 0.68
CLN3-239ENST00000628023 LRRTM3Q86VH5 581 aa19.28■□□□□ 0.68
CLN3-239ENST00000628023 ELMOD1Q8N336 334 aa19.28■□□□□ 0.68
CLN3-239ENST00000628023 SPPL2BQ8TCT7 592 aa19.28■□□□□ 0.68
CLN3-239ENST00000628023 TATDN2Q93075 761 aa19.28■□□□□ 0.68
CLN3-239ENST00000628023 FAXDC2Q96IV6 333 aa19.28■□□□□ 0.68
CLN3-239ENST00000628023 TNIP3Q96KP6 325 aa19.28■□□□□ 0.68
CLN3-239ENST00000628023 PRKD2Q9BZL6 878 aa19.28■□□□□ 0.68
CLN3-239ENST00000628023 INTS2Q9H0H0 1204 aaKnown RBP19.28■□□□□ 0.68
CLN3-239ENST00000628023 MFSD1Q9H3U5 465 aa19.28■□□□□ 0.68
CLN3-239ENST00000628023 DPEP3Q9H4B8 488 aa19.28■□□□□ 0.68
CLN3-239ENST00000628023 TAB2Q9NYJ8 693 aa19.28■□□□□ 0.68
CLN3-239ENST00000628023 SLC27A5Q9Y2P5 690 aa19.28■□□□□ 0.68
CLN3-239ENST00000628023 YIPF1Q9Y548 306 aa19.28■□□□□ 0.68
CLN3-239ENST00000628023 MYBPHLA2RUH7 354 aa19.27■□□□□ 0.68
CLN3-239ENST00000628023 ATP2C2O75185 946 aa19.27■□□□□ 0.68
CLN3-239ENST00000628023 ASGR2P07307 311 aa19.27■□□□□ 0.68
CLN3-239ENST00000628023 TBXAS1P24557 533 aaPredicted RBP19.27■□□□□ 0.68
CLN3-239ENST00000628023 ALDH1A3P47895 512 aa19.27■□□□□ 0.68
CLN3-239ENST00000628023 NDST1P52848 882 aa19.27■□□□□ 0.68
CLN3-239ENST00000628023 VCPP55072 806 aaKnown RBP19.27■□□□□ 0.68
CLN3-239ENST00000628023 YWHAEP62258 255 aaKnown RBP19.27■□□□□ 0.68
CLN3-239ENST00000628023 CYP27A1Q02318 531 aa19.27■□□□□ 0.68
CLN3-239ENST00000628023 TWF1Q12792 350 aa19.27■□□□□ 0.68
CLN3-239ENST00000628023 CUL2Q13617 745 aa19.27■□□□□ 0.68
CLN3-239ENST00000628023 MDH1BQ5I0G3 518 aa19.27■□□□□ 0.68
CLN3-239ENST00000628023 GBP6Q6ZN66 633 aa19.27■□□□□ 0.68
CLN3-239ENST00000628023 PPM1KQ8N3J5 372 aa19.27■□□□□ 0.68
CLN3-239ENST00000628023 TTC39CQ8N584 583 aa19.27■□□□□ 0.68
CLN3-239ENST00000628023 B3GALNT2Q8NCR0 500 aa19.27■□□□□ 0.68
CLN3-239ENST00000628023 MYLPFQ96A32 169 aa19.27■□□□□ 0.68
CLN3-239ENST00000628023 CRACR2AQ9BSW2 395 aa19.27■□□□□ 0.68
CLN3-239ENST00000628023 NDST4Q9H3R1 872 aa19.27■□□□□ 0.68
CLN3-239ENST00000628023 CRTAC1Q9NQ79 661 aa19.27■□□□□ 0.68
CLN3-239ENST00000628023 TMLHEQ9NVH6 421 aa19.27■□□□□ 0.68
CLN3-239ENST00000628023 VNN2O95498 520 aa19.26■□□□□ 0.67
CLN3-239ENST00000628023 PTPN1P18031 435 aaKnown RBP19.26■□□□□ 0.67
CLN3-239ENST00000628023 ORC1Q13415 861 aa19.26■□□□□ 0.67
CLN3-239ENST00000628023 EXOC3L4Q17RC7 722 aa19.26■□□□□ 0.67
CLN3-239ENST00000628023 CCDC142Q17RM4 750 aa19.26■□□□□ 0.67
CLN3-239ENST00000628023 UNC93AQ86WB7 457 aa19.26■□□□□ 0.67
CLN3-239ENST00000628023 TTC9BQ8N6N2 239 aa19.26■□□□□ 0.67
CLN3-239ENST00000628023 EHBP1Q8NDI1 1231 aa19.26■□□□□ 0.67
CLN3-239ENST00000628023 FAM200AQ8TCP9 573 aa19.26■□□□□ 0.67
CLN3-239ENST00000628023 ZNF707Q96C28 371 aaPredicted RBP19.26■□□□□ 0.67
CLN3-239ENST00000628023 ARID3AQ99856 593 aa19.26■□□□□ 0.67
CLN3-239ENST00000628023 CRISPLD1Q9H336 500 aa19.26■□□□□ 0.67
CLN3-239ENST00000628023 HMGXB4Q9UGU5 601 aa19.26■□□□□ 0.67
CLN3-239ENST00000628023 NME7Q9Y5B8 376 aa19.26■□□□□ 0.67
CLN3-239ENST00000628023 SOAT2O75908 522 aa19.25■□□□□ 0.67
CLN3-239ENST00000628023 PDGFBP01127 241 aaPredicted RBP19.25■□□□□ 0.67
CLN3-239ENST00000628023 TUFMP49411 452 aaKnown RBP19.25■□□□□ 0.67
CLN3-239ENST00000628023 EPHB3P54753 998 aa19.25■□□□□ 0.67
CLN3-239ENST00000628023 TPM4P67936 248 aa19.25■□□□□ 0.67
CLN3-239ENST00000628023 INCA1Q0VD86 236 aa19.25■□□□□ 0.67
CLN3-239ENST00000628023 TCF15Q12870 199 aa19.25■□□□□ 0.67
CLN3-239ENST00000628023 VEPH1Q14D04 833 aa19.25■□□□□ 0.67
CLN3-239ENST00000628023 NCAPHQ15003 741 aa19.25■□□□□ 0.67
CLN3-239ENST00000628023 KRT31Q15323 416 aa19.25■□□□□ 0.67
CLN3-239ENST00000628023 IQCEQ6IPM2 695 aa19.25■□□□□ 0.67
CLN3-239ENST00000628023 FAM171BQ6P995 826 aa19.25■□□□□ 0.67
CLN3-239ENST00000628023 ACOT1Q86TX2 421 aa19.25■□□□□ 0.67
CLN3-239ENST00000628023 DHX40Q8IX18 779 aaKnown RBP19.25■□□□□ 0.67
CLN3-239ENST00000628023 MYCBPAPQ8TBZ2 947 aa19.25■□□□□ 0.67
CLN3-239ENST00000628023 PKMYT1Q99640 499 aa19.25■□□□□ 0.67
CLN3-239ENST00000628023 MED10Q9BTT4 135 aa19.25■□□□□ 0.67
CLN3-239ENST00000628023 NT5C1AQ9BXI3 368 aa19.25■□□□□ 0.67
CLN3-239ENST00000628023 ABCB6Q9NP58 842 aa19.25■□□□□ 0.67
CLN3-239ENST00000628023 CISHQ9NSE2 258 aa19.25■□□□□ 0.67
CLN3-239ENST00000628023 HSFX1Q9UBD0 423 aa19.25■□□□□ 0.67
CLN3-239ENST00000628023 ATP8B3O60423 1300 aa19.25■□□□□ 0.67
CLN3-239ENST00000628023 GTPBP10A4D1E9 387 aaKnown RBP19.24■□□□□ 0.67
CLN3-239ENST00000628023 CAVIN2O95810 425 aa19.24■□□□□ 0.67
CLN3-239ENST00000628023 TDGQ13569 410 aa19.24■□□□□ 0.67
CLN3-239ENST00000628023 MIIPQ5JXC2 388 aa19.24■□□□□ 0.67
CLN3-239ENST00000628023 FKBP15Q5T1M5 1219 aa19.24■□□□□ 0.67
CLN3-239ENST00000628023 FEZF2Q8TBJ5 459 aa19.24■□□□□ 0.67
CLN3-239ENST00000628023 ATOH1Q92858 354 aaPredicted RBP19.24■□□□□ 0.67
CLN3-239ENST00000628023 PCED1BQ96HM7 432 aa19.24■□□□□ 0.67
CLN3-239ENST00000628023 FUBP3Q96I24 572 aaKnown RBP eCLIP19.24■□□□□ 0.67
CLN3-239ENST00000628023 ZNF512Q96ME7 567 aaPredicted RBP19.24■□□□□ 0.67
CLN3-239ENST00000628023 RHOBTB2Q9BYZ6 727 aa19.24■□□□□ 0.67
CLN3-239ENST00000628023 VPS16Q9H269 839 aa19.24■□□□□ 0.67
CLN3-239ENST00000628023 IGSF9Q9P2J2 1179 aa19.24■□□□□ 0.67
CLN3-239ENST00000628023 KMT2EQ8IZD2 1858 aa19.24■□□□□ 0.67
CLN3-239ENST00000628023 CILPO75339 1184 aa19.23■□□□□ 0.67
CLN3-239ENST00000628023 POU2F2P09086 479 aa19.23■□□□□ 0.67
CLN3-239ENST00000628023 HAPLN1P10915 354 aaPredicted RBP19.23■□□□□ 0.67
CLN3-239ENST00000628023 CYP2F1P24903 491 aa19.23■□□□□ 0.67
CLN3-239ENST00000628023 GBP2P32456 591 aaPredicted RBP19.23■□□□□ 0.67
CLN3-239ENST00000628023 TAF12Q16514 161 aa19.23■□□□□ 0.67
CLN3-239ENST00000628023 CFAP221Q4G0U5 840 aa19.23■□□□□ 0.67
CLN3-239ENST00000628023 ZNF394Q53GI3 561 aa19.23■□□□□ 0.67
CLN3-239ENST00000628023 ASTLQ6HA08 431 aaPredicted RBP19.23■□□□□ 0.67
CLN3-239ENST00000628023 TRIM65Q6PJ69 517 aa19.23■□□□□ 0.67
CLN3-239ENST00000628023 RRAGAQ7L523 313 aa19.23■□□□□ 0.67
CLN3-239ENST00000628023 GRASPQ7Z6J2 395 aaPredicted RBP19.23■□□□□ 0.67
CLN3-239ENST00000628023 SCN4BQ8IWT1 228 aa19.23■□□□□ 0.67
CLN3-239ENST00000628023 LMO3Q8TAP4 145 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms