RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 RTN4Q9NQC3 1192 aaKnown RBP20.33■□□□□ 0.85
SQSTM1-216ENST00000626660 SLC27A5Q9Y2P5 690 aa20.33■□□□□ 0.85
SQSTM1-216ENST00000626660 VCANP13611 3396 aa20.33■□□□□ 0.84
SQSTM1-216ENST00000626660 PTPRDP23468 1912 aa20.33■□□□□ 0.84
SQSTM1-216ENST00000626660 A0A1B0GTH6 734 aa20.32■□□□□ 0.84
SQSTM1-216ENST00000626660 HAPLN1P10915 354 aaPredicted RBP20.32■□□□□ 0.84
SQSTM1-216ENST00000626660 RAD23BP54727 409 aa20.32■□□□□ 0.84
SQSTM1-216ENST00000626660 APBA1Q02410 837 aa20.32■□□□□ 0.84
SQSTM1-216ENST00000626660 SMAD4Q13485 552 aaKnown RBP20.32■□□□□ 0.84
SQSTM1-216ENST00000626660 ARHGAP44Q17R89 818 aa20.32■□□□□ 0.84
SQSTM1-216ENST00000626660 LEXMQ3ZCV2 418 aa20.32■□□□□ 0.84
SQSTM1-216ENST00000626660 KLHDC7AQ5VTJ3 777 aa20.32■□□□□ 0.84
SQSTM1-216ENST00000626660 GJB7Q6PEY0 223 aa20.32■□□□□ 0.84
SQSTM1-216ENST00000626660 UBR7Q8N806 425 aa20.32■□□□□ 0.84
SQSTM1-216ENST00000626660 SMRP1Q8NCR6 262 aa20.32■□□□□ 0.84
SQSTM1-216ENST00000626660 SMG7Q92540 1137 aaKnown RBP20.32■□□□□ 0.84
SQSTM1-216ENST00000626660 HEXIM2Q96MH2 286 aaKnown RBP20.32■□□□□ 0.84
SQSTM1-216ENST00000626660 ERGIC2Q96RQ1 377 aa20.32■□□□□ 0.84
SQSTM1-216ENST00000626660 ADAM7Q9H2U9 754 aa20.32■□□□□ 0.84
SQSTM1-216ENST00000626660 FAM49BQ9NUQ9 324 aa20.32■□□□□ 0.84
SQSTM1-216ENST00000626660 DNAJC12Q9UKB3 198 aa20.32■□□□□ 0.84
SQSTM1-216ENST00000626660 CCL16O15467 120 aa20.31■□□□□ 0.84
SQSTM1-216ENST00000626660 KRT5P13647 590 aa20.31■□□□□ 0.84
SQSTM1-216ENST00000626660 ACO1P21399 889 aaKnown RBP20.31■□□□□ 0.84
SQSTM1-216ENST00000626660 MAGEA11P43364 429 aa20.31■□□□□ 0.84
SQSTM1-216ENST00000626660 EPHB3P54753 998 aa20.31■□□□□ 0.84
SQSTM1-216ENST00000626660 UBASH3AP57075 661 aa20.31■□□□□ 0.84
SQSTM1-216ENST00000626660 RPL10AP62906 217 aaKnown RBP20.31■□□□□ 0.84
SQSTM1-216ENST00000626660 TWF1Q12792 350 aa20.31■□□□□ 0.84
SQSTM1-216ENST00000626660 PUS10Q3MIT2 529 aaKnown RBP20.31■□□□□ 0.84
SQSTM1-216ENST00000626660 SMYD5Q6GMV2 418 aa20.31■□□□□ 0.84
SQSTM1-216ENST00000626660 VSTM1Q6UX27 236 aa20.31■□□□□ 0.84
SQSTM1-216ENST00000626660 TTC9BQ8N6N2 239 aa20.31■□□□□ 0.84
SQSTM1-216ENST00000626660 SLC4A11Q8NBS3 891 aa20.31■□□□□ 0.84
SQSTM1-216ENST00000626660 RBBP8NLQ8NC74 664 aaPredicted RBP20.31■□□□□ 0.84
SQSTM1-216ENST00000626660 NEK11Q8NG66 645 aa20.31■□□□□ 0.84
SQSTM1-216ENST00000626660 RIPOR3Q96MK2 946 aa20.31■□□□□ 0.84
SQSTM1-216ENST00000626660 LPIN3Q9BQK8 851 aa20.31■□□□□ 0.84
SQSTM1-216ENST00000626660 B3GNT5Q9BYG0 378 aa20.31■□□□□ 0.84
SQSTM1-216ENST00000626660 S1PR5Q9H228 398 aa20.31■□□□□ 0.84
SQSTM1-216ENST00000626660 CRISPLD1Q9H336 500 aa20.31■□□□□ 0.84
SQSTM1-216ENST00000626660 FAM207AQ9NSI2 230 aaPredicted RBP20.31■□□□□ 0.84
SQSTM1-216ENST00000626660 FAM50BQ9Y247 325 aa20.31■□□□□ 0.84
SQSTM1-216ENST00000626660 SIK3Q9Y2K2 1263 aa20.31■□□□□ 0.84
SQSTM1-216ENST00000626660 DAAM1Q9Y4D1 1078 aa20.31■□□□□ 0.84
SQSTM1-216ENST00000626660 TPM3P06753 285 aa20.3■□□□□ 0.84
SQSTM1-216ENST00000626660 POU2F2P09086 479 aa20.3■□□□□ 0.84
SQSTM1-216ENST00000626660 PAEPP09466 180 aa20.3■□□□□ 0.84
SQSTM1-216ENST00000626660 CD19P15391 556 aa20.3■□□□□ 0.84
SQSTM1-216ENST00000626660 BDNFP23560 247 aa20.3■□□□□ 0.84
SQSTM1-216ENST00000626660 CYP2F1P24903 491 aa20.3■□□□□ 0.84
SQSTM1-216ENST00000626660 MTHFRP42898 656 aa20.3■□□□□ 0.84
SQSTM1-216ENST00000626660 RAPGEF1Q13905 1077 aa20.3■□□□□ 0.84
SQSTM1-216ENST00000626660 VEPH1Q14D04 833 aa20.3■□□□□ 0.84
SQSTM1-216ENST00000626660 ATAT1Q5SQI0 421 aa20.3■□□□□ 0.84
SQSTM1-216ENST00000626660 GPR149Q86SP6 731 aa20.3■□□□□ 0.84
SQSTM1-216ENST00000626660 FAM35AQ86V20 835 aa20.3■□□□□ 0.84
SQSTM1-216ENST00000626660 SCN4BQ8IWT1 228 aa20.3■□□□□ 0.84
SQSTM1-216ENST00000626660 C12orf29Q8N999 325 aa20.3■□□□□ 0.84
SQSTM1-216ENST00000626660 NAP1L5Q96NT1 182 aaPredicted RBP20.3■□□□□ 0.84
SQSTM1-216ENST00000626660 RHOBTB2Q9BYZ6 727 aa20.3■□□□□ 0.84
SQSTM1-216ENST00000626660 KIAA1257Q9ULG3 409 aa20.3■□□□□ 0.84
SQSTM1-216ENST00000626660 C2orf16Q68DN1 1984 aa20.3■□□□□ 0.84
SQSTM1-216ENST00000626660 PRUNE2Q8WUY3 3088 aa20.3■□□□□ 0.84
SQSTM1-216ENST00000626660 CLDN5O00501 218 aa20.29■□□□□ 0.84
SQSTM1-216ENST00000626660 TEX33O43247 280 aa20.29■□□□□ 0.84
SQSTM1-216ENST00000626660 SOAT2O75908 522 aa20.29■□□□□ 0.84
SQSTM1-216ENST00000626660 PAPLNO95428 1278 aa20.29■□□□□ 0.84
SQSTM1-216ENST00000626660 CCDC130P13994 396 aa20.29■□□□□ 0.84
SQSTM1-216ENST00000626660 UCHL3P15374 230 aa20.29■□□□□ 0.84
SQSTM1-216ENST00000626660 ANXA13P27216 316 aa20.29■□□□□ 0.84
SQSTM1-216ENST00000626660 GRIK1P39086 918 aa20.29■□□□□ 0.84
SQSTM1-216ENST00000626660 USP8P40818 1118 aa20.29■□□□□ 0.84
SQSTM1-216ENST00000626660 KLK7P49862 253 aa20.29■□□□□ 0.84
SQSTM1-216ENST00000626660 TFF2Q03403 129 aa20.29■□□□□ 0.84
SQSTM1-216ENST00000626660 SGO2Q562F6 1265 aa20.29■□□□□ 0.84
SQSTM1-216ENST00000626660 IQCEQ6IPM2 695 aa20.29■□□□□ 0.84
SQSTM1-216ENST00000626660 DPY19L2P1Q6NXN4 242 aa20.29■□□□□ 0.84
SQSTM1-216ENST00000626660 ITIH5Q86UX2 942 aa20.29■□□□□ 0.84
SQSTM1-216ENST00000626660 SLC2A14Q8TDB8 520 aa20.29■□□□□ 0.84
SQSTM1-216ENST00000626660 SHC3Q92529 594 aa20.29■□□□□ 0.84
SQSTM1-216ENST00000626660 ZNF707Q96C28 371 aaPredicted RBP20.29■□□□□ 0.84
SQSTM1-216ENST00000626660 CYFIP2Q96F07 1278 aa20.29■□□□□ 0.84
SQSTM1-216ENST00000626660 ZNF512Q96ME7 567 aaPredicted RBP20.29■□□□□ 0.84
SQSTM1-216ENST00000626660 ZNF518BQ9C0D4 1074 aa20.29■□□□□ 0.84
SQSTM1-216ENST00000626660 USP15Q9Y4E8 981 aaPredicted RBP20.29■□□□□ 0.84
SQSTM1-216ENST00000626660 ASB3Q9Y575 518 aa20.29■□□□□ 0.84
SQSTM1-216ENST00000626660 FHOD1Q9Y613 1164 aa20.29■□□□□ 0.84
SQSTM1-216ENST00000626660 REV3LO60673 3130 aa20.29■□□□□ 0.84
SQSTM1-216ENST00000626660 A0A1W2PQC6 194 aa20.28■□□□□ 0.84
SQSTM1-216ENST00000626660 TRIM66O15016 1216 aa20.28■□□□□ 0.84
SQSTM1-216ENST00000626660 CBFA2T2O43439 604 aa20.28■□□□□ 0.84
SQSTM1-216ENST00000626660 MBTPS2O43462 519 aa20.28■□□□□ 0.84
SQSTM1-216ENST00000626660 VDRP11473 427 aa20.28■□□□□ 0.84
SQSTM1-216ENST00000626660 COL9A1P20849 921 aa20.28■□□□□ 0.84
SQSTM1-216ENST00000626660 ADORA2BP29275 332 aa20.28■□□□□ 0.84
SQSTM1-216ENST00000626660 MRPS5P82675 430 aaKnown RBP20.28■□□□□ 0.84
SQSTM1-216ENST00000626660 TAF12Q16514 161 aa20.28■□□□□ 0.84
SQSTM1-216ENST00000626660 PTCRAQ6ISU1 281 aaPredicted RBP20.28■□□□□ 0.84
SQSTM1-216ENST00000626660 FUKQ8N0W3 1084 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms