RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 SSU72P8A0A1W2PR75 194 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 CCDC22O60826 627 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 RAP1GDS1P52306 607 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 FBXO38Q6PIJ6 1188 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 OR9Q1Q8NGQ5 310 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 SYTL5Q8TDW5 730 aaPredicted RBP11.85□□□□□ -0.51
CLIP1-219ENST00000620786 ASCC2Q9H1I8 757 aaPredicted RBP11.85□□□□□ -0.51
CLIP1-219ENST00000620786 SNTG2Q9NY99 539 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 STRNO43815 780 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 RHOCP08134 193 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 ITIH2P19823 946 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 IGFBP4P22692 258 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 ELAVL2Q12926 359 aaKnown RBP11.85□□□□□ -0.51
CLIP1-219ENST00000620786 GRB10Q13322 594 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 FLOT2Q14254 428 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 CHP1Q99653 195 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 CNTNAP2Q9UHC6 1331 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 RIN2Q8WYP3 895 aaPredicted RBP11.85□□□□□ -0.51
CLIP1-219ENST00000620786 FAM161BQ96MY7 647 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 DNAJC7Q99615 494 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 EIF2AQ9BY44 585 aaKnown RBP11.85□□□□□ -0.51
CLIP1-219ENST00000620786 KIAA1683Q9H0B3 1180 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 GOLPH3Q9H4A6 298 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 YY1AP1Q9H869 796 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 NMRK2Q9NPI5 230 aa11.85□□□□□ -0.51
CLIP1-219ENST00000620786 WARS2Q9UGM6 360 aaKnown RBP11.85□□□□□ -0.51
CLIP1-219ENST00000620786 WNT10BO00744 389 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 TMEM253P0C7T8 217 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 TAL1P17542 331 aaPredicted RBP11.84□□□□□ -0.51
CLIP1-219ENST00000620786 GUCY2CP25092 1073 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 HSPA9P38646 679 aaKnown RBP11.84□□□□□ -0.51
CLIP1-219ENST00000620786 BCAT1P54687 386 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 C6orf10Q5SRN2 563 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 ACAD10Q6JQN1 1059 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 MOXD1Q6UVY6 613 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 FZD1Q9UP38 647 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 VWA5AO00534 786 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 HLA-DPA1P20036 260 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 MKRN4PQ13434 485 aaPredicted RBP11.84□□□□□ -0.51
CLIP1-219ENST00000620786 NUP93Q8N1F7 819 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 P2RX7Q99572 595 aaKnown RBP11.84□□□□□ -0.51
CLIP1-219ENST00000620786 SENP6Q9GZR1 1112 aaPredicted RBP11.84□□□□□ -0.51
CLIP1-219ENST00000620786 MAN1C1Q9NR34 630 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 TMEM161AQ9NX61 479 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 PLA2G4CQ9UP65 541 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 USP32Q8NFA0 1604 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 TARSL2A2RTX5 802 aaKnown RBP11.84□□□□□ -0.51
CLIP1-219ENST00000620786 USP27XA6NNY8 438 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 H0Y3Z8 333 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 CHUKO15111 745 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 CLASP2O75122 1294 aaKnown RBP11.84□□□□□ -0.51
CLIP1-219ENST00000620786 GHRP10912 638 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 INSRRP14616 1297 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 KRT4P19013 534 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 ALDH5A1P51649 535 aaPredicted RBP11.84□□□□□ -0.51
CLIP1-219ENST00000620786 C4orf22Q6V702 233 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 USP49Q70CQ1 688 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 CBWD2Q8IUF1 395 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 COG1Q8WTW3 980 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 CYFIP2Q96F07 1278 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 VTA1Q9NP79 307 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 TLR8Q9NR97 1041 aaKnown RBP11.84□□□□□ -0.51
CLIP1-219ENST00000620786 WWOXQ9NZC7 414 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 CHORDC1Q9UHD1 332 aaPredicted RBP11.84□□□□□ -0.51
CLIP1-219ENST00000620786 PREX1Q8TCU6 1659 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 EIF2B5Q13144 721 aaKnown RBP11.84□□□□□ -0.51
CLIP1-219ENST00000620786 PTK7Q13308 1070 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 TIGD7Q6NT04 549 aaPredicted RBP11.84□□□□□ -0.51
CLIP1-219ENST00000620786 DENND5BQ6ZUT9 1274 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 SPATA4Q8NEY3 305 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 ZFYVE19Q96K21 471 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 WWP1Q9H0M0 922 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 PSMC3IPQ9P2W1 217 aaPredicted RBP11.84□□□□□ -0.51
CLIP1-219ENST00000620786 TRMT6Q9UJA5 497 aaKnown RBP11.84□□□□□ -0.51
CLIP1-219ENST00000620786 SNX12Q9UMY4 172 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 SRP72O76094 671 aaKnown RBP11.84□□□□□ -0.51
CLIP1-219ENST00000620786 FSCN1Q16658 493 aaKnown RBP11.84□□□□□ -0.51
CLIP1-219ENST00000620786 ATP6V1G3Q96LB4 118 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 PKD2L2Q9NZM6 624 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 VPS9D1Q9Y2B5 631 aa11.84□□□□□ -0.51
CLIP1-219ENST00000620786 CSDE1O75534 798 aaKnown RBP11.83□□□□□ -0.52
CLIP1-219ENST00000620786 FBXO21O94952 628 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 IL10P22301 178 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 PSEN2P49810 448 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 RHOAP61586 193 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 ERVK-9P63128 1117 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 ERVK-24P63145 666 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 PPATQ06203 517 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 ACVR2BQ13705 512 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 ZNF284Q2VY69 593 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 TTLL9Q3SXZ7 439 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 SLC30A10Q6XR72 485 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 ST13P4Q8IZP2 240 aaPredicted RBP11.83□□□□□ -0.52
CLIP1-219ENST00000620786 DACH2Q96NX9 599 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 CDK5RAP1Q96SZ6 601 aaKnown RBP11.83□□□□□ -0.52
CLIP1-219ENST00000620786 BRD8Q9H0E9 1235 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 KIAA1257Q9ULG3 409 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 ARHGAP26Q9UNA1 814 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 HPS5Q9UPZ3 1129 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 AURKCQ9UQB9 309 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms