RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 BACH2Q9BYV9 841 aa12.78□□□□□ -0.36
UPF3B-204ENST00000619445 MTMR12Q9C0I1 747 aa12.78□□□□□ -0.36
UPF3B-204ENST00000619445 IKZF4Q9H2S9 585 aa12.78□□□□□ -0.36
UPF3B-204ENST00000619445 PDE11AQ9HCR9 933 aa12.78□□□□□ -0.36
UPF3B-204ENST00000619445 GTSE1Q9NYZ3 720 aa12.78□□□□□ -0.36
UPF3B-204ENST00000619445 CDH9Q9ULB4 789 aa12.78□□□□□ -0.36
UPF3B-204ENST00000619445 OBSL1O75147 1896 aa12.77□□□□□ -0.36
UPF3B-204ENST00000619445 A0A087X0B3 334 aa12.77□□□□□ -0.37
UPF3B-204ENST00000619445 CCDC163A0A0D9SF12 145 aa12.77□□□□□ -0.37
UPF3B-204ENST00000619445 GOLGA8IPA6NC78 632 aa12.77□□□□□ -0.37
UPF3B-204ENST00000619445 GOLGA8JA6NMD2 632 aa12.77□□□□□ -0.37
UPF3B-204ENST00000619445 RETP07949 1114 aa12.77□□□□□ -0.37
UPF3B-204ENST00000619445 USP17L7P0C7H9 530 aa12.77□□□□□ -0.37
UPF3B-204ENST00000619445 PPP3CCP48454 512 aa12.77□□□□□ -0.37
UPF3B-204ENST00000619445 FAM160A1Q05DH4 1040 aa12.77□□□□□ -0.37
UPF3B-204ENST00000619445 RUNX3Q13761 415 aa12.77□□□□□ -0.37
UPF3B-204ENST00000619445 E2F4Q16254 413 aa12.77□□□□□ -0.37
UPF3B-204ENST00000619445 FBXO43Q4G163 708 aa12.77□□□□□ -0.37
UPF3B-204ENST00000619445 FAM26FQ5R3K3 315 aa12.77□□□□□ -0.37
UPF3B-204ENST00000619445 RALGAPA1Q6GYQ0 2036 aa12.77□□□□□ -0.37
UPF3B-204ENST00000619445 DCLK2Q8N568 766 aa12.77□□□□□ -0.37
UPF3B-204ENST00000619445 KIAA1958Q8N8K9 716 aa12.77□□□□□ -0.37
UPF3B-204ENST00000619445 CXorf38Q8TB03 319 aa12.77□□□□□ -0.37
UPF3B-204ENST00000619445 GOLGA5Q8TBA6 731 aa12.77□□□□□ -0.37
UPF3B-204ENST00000619445 ZNF507Q8TCN5 953 aa12.77□□□□□ -0.37
UPF3B-204ENST00000619445 SNX21Q969T3 373 aa12.77□□□□□ -0.37
UPF3B-204ENST00000619445 DCHS1Q96JQ0 3298 aa12.77□□□□□ -0.37
UPF3B-204ENST00000619445 LRRC3BQ96PB8 259 aa12.77□□□□□ -0.37
UPF3B-204ENST00000619445 FNBP1Q96RU3 617 aa12.77□□□□□ -0.37
UPF3B-204ENST00000619445 C7orf25Q9BPX7 421 aa12.77□□□□□ -0.37
UPF3B-204ENST00000619445 PCIF1Q9H4Z3 704 aa12.77□□□□□ -0.37
UPF3B-204ENST00000619445 GKN1Q9NS71 199 aa12.77□□□□□ -0.37
UPF3B-204ENST00000619445 HSPBP1Q9NZL4 362 aa12.77□□□□□ -0.37
UPF3B-204ENST00000619445 SIX4Q9UIU6 781 aa12.77□□□□□ -0.37
UPF3B-204ENST00000619445 GTF3C4Q9UKN8 822 aa12.77□□□□□ -0.37
UPF3B-204ENST00000619445 MAGED2Q9UNF1 606 aaPredicted RBP12.77□□□□□ -0.37
UPF3B-204ENST00000619445 NCOR2Q9Y618 2525 aa12.76□□□□□ -0.37
UPF3B-204ENST00000619445 TRAV19A0A0A6YYK7 116 aa12.76□□□□□ -0.37
UPF3B-204ENST00000619445 TRDMT1O14717 391 aaKnown RBP12.76□□□□□ -0.37
UPF3B-204ENST00000619445 HSP90AA1P07900 732 aaKnown RBP12.76□□□□□ -0.37
UPF3B-204ENST00000619445 DRD1P21728 446 aa12.76□□□□□ -0.37
UPF3B-204ENST00000619445 CYP2F1P24903 491 aa12.76□□□□□ -0.37
UPF3B-204ENST00000619445 SOX9P48436 509 aa12.76□□□□□ -0.37
UPF3B-204ENST00000619445 SATB1Q01826 763 aa12.76□□□□□ -0.37
UPF3B-204ENST00000619445 NR1H3Q13133 447 aa12.76□□□□□ -0.37
UPF3B-204ENST00000619445 SIM2Q14190 667 aaPredicted RBP12.76□□□□□ -0.37
UPF3B-204ENST00000619445 PON2Q15165 354 aa12.76□□□□□ -0.37
UPF3B-204ENST00000619445 SOWAHAQ2M3V2 549 aa12.76□□□□□ -0.37
UPF3B-204ENST00000619445 FAM171BQ6P995 826 aa12.76□□□□□ -0.37
UPF3B-204ENST00000619445 TXNDC11Q6PKC3 985 aa12.76□□□□□ -0.37
UPF3B-204ENST00000619445 UNC13DQ70J99 1090 aa12.76□□□□□ -0.37
UPF3B-204ENST00000619445 LIMS2Q7Z4I7 341 aa12.76□□□□□ -0.37
UPF3B-204ENST00000619445 TMEM150AQ86TG1 271 aa12.76□□□□□ -0.37
UPF3B-204ENST00000619445 CPA6Q8N4T0 437 aa12.76□□□□□ -0.37
UPF3B-204ENST00000619445 USP13Q92995 863 aaPredicted RBP12.76□□□□□ -0.37
UPF3B-204ENST00000619445 ATP2A3Q93084 1043 aa12.76□□□□□ -0.37
UPF3B-204ENST00000619445 ZFYVE19Q96K21 471 aa12.76□□□□□ -0.37
UPF3B-204ENST00000619445 SPATA17Q96L03 361 aa12.76□□□□□ -0.37
UPF3B-204ENST00000619445 PKMYT1Q99640 499 aa12.76□□□□□ -0.37
UPF3B-204ENST00000619445 SYT15Q9BQS2 421 aa12.76□□□□□ -0.37
UPF3B-204ENST00000619445 TMLHEQ9NVH6 421 aa12.76□□□□□ -0.37
UPF3B-204ENST00000619445 FAM13BQ9NYF5 915 aa12.76□□□□□ -0.37
UPF3B-204ENST00000619445 MAGEC2Q9UBF1 373 aaPredicted RBP12.76□□□□□ -0.37
UPF3B-204ENST00000619445 CDV3Q9UKY7 258 aaKnown RBP12.76□□□□□ -0.37
UPF3B-204ENST00000619445 CFAP45Q9UL16 551 aa12.76□□□□□ -0.37
UPF3B-204ENST00000619445 USP18Q9UMW8 372 aa12.76□□□□□ -0.37
UPF3B-204ENST00000619445 SPTBN2O15020 2390 aa12.76□□□□□ -0.37
UPF3B-204ENST00000619445 PVALEFA0A1B0GWK0 134 aa12.75□□□□□ -0.37
UPF3B-204ENST00000619445 TRIM66O15016 1216 aa12.75□□□□□ -0.37
UPF3B-204ENST00000619445 CKMP06732 381 aa12.75□□□□□ -0.37
UPF3B-204ENST00000619445 TCF3P15923 654 aa12.75□□□□□ -0.37
UPF3B-204ENST00000619445 TNNI1P19237 187 aa12.75□□□□□ -0.37
UPF3B-204ENST00000619445 WARSP23381 471 aaKnown RBP12.75□□□□□ -0.37
UPF3B-204ENST00000619445 ANXA13P27216 316 aa12.75□□□□□ -0.37
UPF3B-204ENST00000619445 WNT7BP56706 349 aa12.75□□□□□ -0.37
UPF3B-204ENST00000619445 GAS6Q14393 721 aa12.75□□□□□ -0.37
UPF3B-204ENST00000619445 KCNB1Q14721 858 aa12.75□□□□□ -0.37
UPF3B-204ENST00000619445 SNRNP35Q16560 246 aaKnown RBP12.75□□□□□ -0.37
UPF3B-204ENST00000619445 DDR2Q16832 855 aa12.75□□□□□ -0.37
UPF3B-204ENST00000619445 RSPO4Q2I0M5 234 aaPredicted RBP12.75□□□□□ -0.37
UPF3B-204ENST00000619445 TMEM196Q5HYL7 178 aa12.75□□□□□ -0.37
UPF3B-204ENST00000619445 TXNDC8Q6A555 127 aa12.75□□□□□ -0.37
UPF3B-204ENST00000619445 PRR23BQ6ZRT6 265 aa12.75□□□□□ -0.37
UPF3B-204ENST00000619445 EPM2AIP1Q7L775 607 aaPredicted RBP12.75□□□□□ -0.37
UPF3B-204ENST00000619445 WDR5BQ86VZ2 330 aa12.75□□□□□ -0.37
UPF3B-204ENST00000619445 CBWD2Q8IUF1 395 aa12.75□□□□□ -0.37
UPF3B-204ENST00000619445 XXYLT1Q8NBI6 393 aa12.75□□□□□ -0.37
UPF3B-204ENST00000619445 DHX58Q96C10 678 aa12.75□□□□□ -0.37
UPF3B-204ENST00000619445 AGPAT3Q9NRZ7 376 aa12.75□□□□□ -0.37
UPF3B-204ENST00000619445 GREB1Q4ZG55 1949 aa12.74□□□□□ -0.37
UPF3B-204ENST00000619445 ANAPC1Q9H1A4 1944 aa12.74□□□□□ -0.37
UPF3B-204ENST00000619445 CHURC1-FNTBB4DL54 471 aa12.74□□□□□ -0.37
UPF3B-204ENST00000619445 K7ESF4 209 aa12.74□□□□□ -0.37
UPF3B-204ENST00000619445 TACC1O75410 805 aa12.74□□□□□ -0.37
UPF3B-204ENST00000619445 AKAP3O75969 853 aa12.74□□□□□ -0.37
UPF3B-204ENST00000619445 STAU1O95793 577 aaKnown RBP12.74□□□□□ -0.37
UPF3B-204ENST00000619445 ACAT1P24752 427 aaKnown RBP12.74□□□□□ -0.37
UPF3B-204ENST00000619445 ATICP31939 592 aa12.74□□□□□ -0.37
UPF3B-204ENST00000619445 IFNAR2P48551 515 aa12.74□□□□□ -0.37
UPF3B-204ENST00000619445 AP3M2P53677 418 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms