RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 SH3BP1Q9Y3L3 701 aa13.08□□□□□ -0.32
CIITA-212ENST00000618207 A0A1B0GUA9 196 aa13.08□□□□□ -0.32
CIITA-212ENST00000618207 MED7O43513 233 aa13.08□□□□□ -0.32
CIITA-212ENST00000618207 MAP3K6O95382 1288 aa13.08□□□□□ -0.32
CIITA-212ENST00000618207 NRLP54845 237 aa13.08□□□□□ -0.32
CIITA-212ENST00000618207 ATP11AP98196 1134 aa13.08□□□□□ -0.32
CIITA-212ENST00000618207 HIC1Q14526 733 aa13.08□□□□□ -0.32
CIITA-212ENST00000618207 OR6B2Q6IFH4 312 aa13.08□□□□□ -0.32
CIITA-212ENST00000618207 ANKRD23Q86SG2 305 aa13.08□□□□□ -0.32
CIITA-212ENST00000618207 C10orf67Q8IYJ2 551 aa13.08□□□□□ -0.32
CIITA-212ENST00000618207 CXorf38Q8TB03 319 aa13.08□□□□□ -0.32
CIITA-212ENST00000618207 GRK7Q8WTQ7 553 aa13.08□□□□□ -0.32
CIITA-212ENST00000618207 CALN1Q9BXU9 219 aa13.08□□□□□ -0.32
CIITA-212ENST00000618207 GOLGA2P5Q9HBQ8 144 aa13.08□□□□□ -0.32
CIITA-212ENST00000618207 MORF4L1Q9UBU8 362 aa13.08□□□□□ -0.32
CIITA-212ENST00000618207 TSPAN16Q9UKR8 245 aa13.08□□□□□ -0.32
CIITA-212ENST00000618207 RRP15Q9Y3B9 282 aaKnown RBP13.08□□□□□ -0.32
CIITA-212ENST00000618207 LRCH4O75427 683 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 RARGP13631 454 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 BYSLQ13895 437 aaKnown RBP13.07□□□□□ -0.32
CIITA-212ENST00000618207 CCNG2Q16589 344 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 C15orf59Q2T9L4 293 aaPredicted RBP13.07□□□□□ -0.32
CIITA-212ENST00000618207 MRPL45Q9BRJ2 306 aaKnown RBP13.07□□□□□ -0.32
CIITA-212ENST00000618207 NFKBIZQ9BYH8 718 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 ASB7Q9H672 318 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 E5RJQ4 531 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 SGK1O00141 431 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 RASGRF2O14827 1237 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 TREHO43280 583 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 RPS6KA5O75582 802 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 MYL3P08590 195 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 PDGFRBP09619 1106 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 SMIM10L2AP0DMW4 78 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 SMIM10L2BP0DMW5 78 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 HOXA11P31270 313 aaPredicted RBP13.07□□□□□ -0.32
CIITA-212ENST00000618207 ARSEP51690 589 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 YARSP54577 528 aaKnown RBP13.07□□□□□ -0.32
CIITA-212ENST00000618207 SATB1Q01826 763 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 PIGHQ14442 188 aaPredicted RBP13.07□□□□□ -0.32
CIITA-212ENST00000618207 SLMAPQ14BN4 828 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 FAM187BQ17R55 369 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 FAM110CQ1W6H9 321 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 PPP1R15BQ5SWA1 713 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 OLFML2BQ68BL8 750 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 SCYL2Q6P3W7 929 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 TLK2Q86UE8 772 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 HOOK3Q86VS8 718 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 XYLT1Q86Y38 959 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 RCOR2Q8IZ40 523 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 GTF3C2Q8WUA4 911 aaPredicted RBP13.07□□□□□ -0.32
CIITA-212ENST00000618207 LRRN4Q8WUT4 740 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 TMEM40Q8WWA1 233 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 RBM41Q96IZ5 413 aaKnown RBP13.07□□□□□ -0.32
CIITA-212ENST00000618207 RUNDC3BQ96NL0 473 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 ZNF518BQ9C0D4 1074 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 MLXIPLQ9NP71 852 aa13.07□□□□□ -0.32
CIITA-212ENST00000618207 PIN4Q9Y237 131 aaKnown RBP13.07□□□□□ -0.32
CIITA-212ENST00000618207 TJP3O95049 919 aa13.06□□□□□ -0.32
CIITA-212ENST00000618207 ITIH2P19823 946 aa13.06□□□□□ -0.32
CIITA-212ENST00000618207 CYP3A5P20815 502 aa13.06□□□□□ -0.32
CIITA-212ENST00000618207 EIF3BP55884 814 aaKnown RBP13.06□□□□□ -0.32
CIITA-212ENST00000618207 RBP5P82980 135 aa13.06□□□□□ -0.32
CIITA-212ENST00000618207 GPS1Q13098 491 aa13.06□□□□□ -0.32
CIITA-212ENST00000618207 PTK6Q13882 451 aa13.06□□□□□ -0.32
CIITA-212ENST00000618207 PTGISQ16647 500 aa13.06□□□□□ -0.32
CIITA-212ENST00000618207 TFDP3Q5H9I0 405 aa13.06□□□□□ -0.32
CIITA-212ENST00000618207 PPP1R26Q5T8A7 1209 aaPredicted RBP13.06□□□□□ -0.32
CIITA-212ENST00000618207 ARFGAP2Q8N6H7 521 aa13.06□□□□□ -0.32
CIITA-212ENST00000618207 OR6B3Q8NGW1 331 aa13.06□□□□□ -0.32
CIITA-212ENST00000618207 MGARPQ8TDB4 240 aa13.06□□□□□ -0.32
CIITA-212ENST00000618207 MIS12Q9H081 205 aa13.06□□□□□ -0.32
CIITA-212ENST00000618207 STRIP2Q9ULQ0 834 aa13.06□□□□□ -0.32
CIITA-212ENST00000618207 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.06□□□□□ -0.32
CIITA-212ENST00000618207 RBM47A0AV96 593 aaKnown RBP13.06□□□□□ -0.32
CIITA-212ENST00000618207 IGF2BP3O00425 579 aaKnown RBP eCLIP13.06□□□□□ -0.32
CIITA-212ENST00000618207 EBAG9O00559 213 aa13.06□□□□□ -0.32
CIITA-212ENST00000618207 LIASO43766 372 aa13.06□□□□□ -0.32
CIITA-212ENST00000618207 CST8O60676 142 aa13.06□□□□□ -0.32
CIITA-212ENST00000618207 PIAS1O75925 651 aa13.06□□□□□ -0.32
CIITA-212ENST00000618207 P4HA1P13674 534 aa13.06□□□□□ -0.32
CIITA-212ENST00000618207 CREB1P16220 341 aa13.06□□□□□ -0.32
CIITA-212ENST00000618207 GPD2P43304 727 aa13.06□□□□□ -0.32
CIITA-212ENST00000618207 IFNAR2P48551 515 aa13.06□□□□□ -0.32
CIITA-212ENST00000618207 MMRN1Q13201 1228 aa13.06□□□□□ -0.32
CIITA-212ENST00000618207 TAF1CQ15572 869 aaPredicted RBP13.06□□□□□ -0.32
CIITA-212ENST00000618207 NCAPGQ9BPX3 1015 aa13.06□□□□□ -0.32
CIITA-212ENST00000618207 RNF39Q9H2S5 420 aa13.06□□□□□ -0.32
CIITA-212ENST00000618207 WHRNQ9P202 907 aa13.06□□□□□ -0.32
CIITA-212ENST00000618207 CACNG4Q9UBN1 327 aa13.06□□□□□ -0.32
CIITA-212ENST00000618207 SLC12A6Q9UHW9 1150 aa13.06□□□□□ -0.32
CIITA-212ENST00000618207 FEZ2Q9UHY8 353 aaPredicted RBP13.06□□□□□ -0.32
CIITA-212ENST00000618207 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.06□□□□□ -0.32
CIITA-212ENST00000618207 hCG_1818297A0A087WSY0 165 aa13.05□□□□□ -0.32
CIITA-212ENST00000618207 SIGLEC16A6NMB1 481 aa13.05□□□□□ -0.32
CIITA-212ENST00000618207 BANF1O75531 89 aa13.05□□□□□ -0.32
CIITA-212ENST00000618207 NUDT17P0C025 328 aa13.05□□□□□ -0.32
CIITA-212ENST00000618207 AGBL2Q5U5Z8 902 aa13.05□□□□□ -0.32
CIITA-212ENST00000618207 CST9Q5W186 159 aa13.05□□□□□ -0.32
CIITA-212ENST00000618207 SCUBE3Q8IX30 993 aa13.05□□□□□ -0.32
CIITA-212ENST00000618207 KCTD6Q8NC69 237 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms