RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 UBR7Q8N806 425 aa17.62■□□□□ 0.41
CCDC28A-202ENST00000611852 ELOVL4Q9GZR5 314 aa17.62■□□□□ 0.41
CCDC28A-202ENST00000611852 PRKAG3Q9UGI9 489 aa17.62■□□□□ 0.41
CCDC28A-202ENST00000611852 LIMA1Q9UHB6 759 aaKnown RBP17.62■□□□□ 0.41
CCDC28A-202ENST00000611852 PTPRDP23468 1912 aa17.62■□□□□ 0.41
CCDC28A-202ENST00000611852 DENND4AQ7Z401 1863 aa17.61■□□□□ 0.41
CCDC28A-202ENST00000611852 CLUHO75153 1309 aa17.61■□□□□ 0.41
CCDC28A-202ENST00000611852 LRRC10BA6NIK2 292 aa17.61■□□□□ 0.41
CCDC28A-202ENST00000611852 PES1O00541 588 aaKnown RBP17.61■□□□□ 0.41
CCDC28A-202ENST00000611852 CAVIN2O95810 425 aa17.61■□□□□ 0.41
CCDC28A-202ENST00000611852 PTPN2P17706 415 aa17.61■□□□□ 0.41
CCDC28A-202ENST00000611852 BDNFP23560 247 aa17.61■□□□□ 0.41
CCDC28A-202ENST00000611852 PON1P27169 355 aa17.61■□□□□ 0.41
CCDC28A-202ENST00000611852 MAGEA11P43364 429 aa17.61■□□□□ 0.41
CCDC28A-202ENST00000611852 NTHL1P78549 312 aa17.61■□□□□ 0.41
CCDC28A-202ENST00000611852 ZNF394Q53GI3 561 aa17.61■□□□□ 0.41
CCDC28A-202ENST00000611852 RRAGAQ7L523 313 aa17.61■□□□□ 0.41
CCDC28A-202ENST00000611852 ELMOD1Q8N336 334 aa17.61■□□□□ 0.41
CCDC28A-202ENST00000611852 C12orf29Q8N999 325 aa17.61■□□□□ 0.41
CCDC28A-202ENST00000611852 KAT5Q92993 513 aa17.61■□□□□ 0.41
CCDC28A-202ENST00000611852 ZNF512Q96ME7 567 aaPredicted RBP17.61■□□□□ 0.41
CCDC28A-202ENST00000611852 B3GNT5Q9BYG0 378 aa17.61■□□□□ 0.41
CCDC28A-202ENST00000611852 VPS16Q9H269 839 aa17.61■□□□□ 0.41
CCDC28A-202ENST00000611852 NOTCH4Q99466 2003 aa17.6■□□□□ 0.41
CCDC28A-202ENST00000611852 A0A0C4DFX4 3053 aa17.6■□□□□ 0.41
CCDC28A-202ENST00000611852 RHOP08100 348 aa17.6■□□□□ 0.41
CCDC28A-202ENST00000611852 ATP1A3P13637 1013 aa17.6■□□□□ 0.41
CCDC28A-202ENST00000611852 CDK11BP21127 795 aaKnown RBP17.6■□□□□ 0.41
CCDC28A-202ENST00000611852 GPR15P49685 360 aa17.6■□□□□ 0.41
CCDC28A-202ENST00000611852 RAD23BP54727 409 aa17.6■□□□□ 0.41
CCDC28A-202ENST00000611852 YWHAEP62258 255 aaKnown RBP17.6■□□□□ 0.41
CCDC28A-202ENST00000611852 APBA1Q02410 837 aa17.6■□□□□ 0.41
CCDC28A-202ENST00000611852 ZP2Q05996 745 aa17.6■□□□□ 0.41
CCDC28A-202ENST00000611852 PABPC1LQ4VXU2 614 aaKnown RBP17.6■□□□□ 0.41
CCDC28A-202ENST00000611852 IQCEQ6IPM2 695 aa17.6■□□□□ 0.41
CCDC28A-202ENST00000611852 VSTM1Q6UX27 236 aa17.6■□□□□ 0.41
CCDC28A-202ENST00000611852 PAQR9Q6ZVX9 377 aa17.6■□□□□ 0.41
CCDC28A-202ENST00000611852 ADHFE1Q8IWW8 467 aa17.6■□□□□ 0.41
CCDC28A-202ENST00000611852 FUKQ8N0W3 1084 aa17.6■□□□□ 0.41
CCDC28A-202ENST00000611852 ANKRD20A12PQ8NF67 263 aa17.6■□□□□ 0.41
CCDC28A-202ENST00000611852 CORO1BQ9BR76 489 aa17.6■□□□□ 0.41
CCDC28A-202ENST00000611852 ZNF518BQ9C0D4 1074 aa17.6■□□□□ 0.41
CCDC28A-202ENST00000611852 CBX8Q9HC52 389 aa17.6■□□□□ 0.41
CCDC28A-202ENST00000611852 ASB3Q9Y575 518 aa17.6■□□□□ 0.41
CCDC28A-202ENST00000611852 BECN2A8MW95 431 aa17.59■□□□□ 0.41
CCDC28A-202ENST00000611852 CLDN5O00501 218 aa17.59■□□□□ 0.41
CCDC28A-202ENST00000611852 TPM2P07951 284 aa17.59■□□□□ 0.41
CCDC28A-202ENST00000611852 TRIM21P19474 475 aaKnown RBP17.59■□□□□ 0.41
CCDC28A-202ENST00000611852 ACO1P21399 889 aaKnown RBP17.59■□□□□ 0.41
CCDC28A-202ENST00000611852 COPB1P53618 953 aaKnown RBP17.59■□□□□ 0.41
CCDC28A-202ENST00000611852 RPL10AP62906 217 aaKnown RBP17.59■□□□□ 0.41
CCDC28A-202ENST00000611852 KCNMA1Q12791 1236 aa17.59■□□□□ 0.41
CCDC28A-202ENST00000611852 DDR2Q16832 855 aa17.59■□□□□ 0.41
CCDC28A-202ENST00000611852 APTXQ7Z2E3 356 aaKnown RBP17.59■□□□□ 0.41
CCDC28A-202ENST00000611852 DNAJB7Q7Z6W7 309 aaPredicted RBP17.59■□□□□ 0.41
CCDC28A-202ENST00000611852 SLC4A11Q8NBS3 891 aa17.59■□□□□ 0.41
CCDC28A-202ENST00000611852 GPR152Q8TDT2 470 aa17.59■□□□□ 0.41
CCDC28A-202ENST00000611852 ADAMTS19Q8TE59 1207 aa17.59■□□□□ 0.41
CCDC28A-202ENST00000611852 PSMG2Q969U7 264 aa17.59■□□□□ 0.41
CCDC28A-202ENST00000611852 TMEM176AQ96HP8 235 aa17.59■□□□□ 0.41
CCDC28A-202ENST00000611852 RPGRIP1Q96KN7 1286 aa17.59■□□□□ 0.41
CCDC28A-202ENST00000611852 KREMEN1Q96MU8 473 aa17.59■□□□□ 0.41
CCDC28A-202ENST00000611852 SIX2Q9NPC8 291 aa17.59■□□□□ 0.41
CCDC28A-202ENST00000611852 UBE2TQ9NPD8 197 aaPredicted RBP17.59■□□□□ 0.41
CCDC28A-202ENST00000611852 AVENQ9NQS1 362 aaPredicted RBP17.59■□□□□ 0.41
CCDC28A-202ENST00000611852 FAM49BQ9NUQ9 324 aa17.59■□□□□ 0.41
CCDC28A-202ENST00000611852 TMEM30AQ9NV96 361 aa17.59■□□□□ 0.41
CCDC28A-202ENST00000611852 APEX2Q9UBZ4 518 aa17.59■□□□□ 0.41
CCDC28A-202ENST00000611852 CCDC130P13994 396 aa17.58■□□□□ 0.41
CCDC28A-202ENST00000611852 CACNA2D1P54289 1103 aa17.58■□□□□ 0.41
CCDC28A-202ENST00000611852 EPHA5P54756 1037 aa17.58■□□□□ 0.41
CCDC28A-202ENST00000611852 VEPH1Q14D04 833 aa17.58■□□□□ 0.41
CCDC28A-202ENST00000611852 SDHAF4Q5VUM1 108 aa17.58■□□□□ 0.41
CCDC28A-202ENST00000611852 ITIH5Q86UX2 942 aa17.58■□□□□ 0.41
CCDC28A-202ENST00000611852 FAM35AQ86V20 835 aa17.58■□□□□ 0.41
CCDC28A-202ENST00000611852 SCN4BQ8IWT1 228 aa17.58■□□□□ 0.41
CCDC28A-202ENST00000611852 HS6ST3Q8IZP7 471 aa17.58■□□□□ 0.41
CCDC28A-202ENST00000611852 FAM200AQ8TCP9 573 aa17.58■□□□□ 0.41
CCDC28A-202ENST00000611852 SLC2A14Q8TDB8 520 aa17.58■□□□□ 0.41
CCDC28A-202ENST00000611852 GIPC2Q8TF65 315 aa17.58■□□□□ 0.41
CCDC28A-202ENST00000611852 CYFIP2Q96F07 1278 aa17.58■□□□□ 0.41
CCDC28A-202ENST00000611852 NECAB3Q96P71 396 aaPredicted RBP17.58■□□□□ 0.41
CCDC28A-202ENST00000611852 LRRC3Q9BY71 257 aa17.58■□□□□ 0.41
CCDC28A-202ENST00000611852 DNAI2Q9GZS0 605 aa17.58■□□□□ 0.41
CCDC28A-202ENST00000611852 USTQ9Y2C2 406 aa17.58■□□□□ 0.41
CCDC28A-202ENST00000611852 C19orf67A6NJJ6 358 aa17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 SP100P23497 879 aaPredicted RBP17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 FSHRP23945 695 aa17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 GRIK1P39086 918 aa17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 SLC5A9Q2M3M2 681 aa17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 DPY19L2P1Q6NXN4 242 aa17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 GJB7Q6PEY0 223 aa17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 TMEM270Q6UE05 265 aa17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 LUZP1Q86V48 1076 aa17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 TMC8Q8IU68 726 aa17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 JAKMIP2Q96AA8 810 aa17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 HEXIM2Q96MH2 286 aaKnown RBP17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 HNRNPABQ99729 332 aaKnown RBP17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 MED10Q9BTT4 135 aa17.57■□□□□ 0.4
CCDC28A-202ENST00000611852 ASAH2Q9NR71 780 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms