RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 HCRTO43612 131 aa8.17□□□□□ -1.1
CUX1-219ENST00000606749 ATP2C2O75185 946 aa8.17□□□□□ -1.1
CUX1-219ENST00000606749 NOL4O94818 638 aa8.17□□□□□ -1.1
CUX1-219ENST00000606749 CST3P01034 146 aaPredicted RBP8.17□□□□□ -1.1
CUX1-219ENST00000606749 TNNC2P02585 160 aa8.17□□□□□ -1.1
CUX1-219ENST00000606749 PDIA4P13667 645 aaKnown RBP8.17□□□□□ -1.1
CUX1-219ENST00000606749 PCSK1P29120 753 aa8.17□□□□□ -1.1
CUX1-219ENST00000606749 AVPR1AP37288 418 aa8.17□□□□□ -1.1
CUX1-219ENST00000606749 EHHADHQ08426 723 aa8.17□□□□□ -1.1
CUX1-219ENST00000606749 RUNX3Q13761 415 aa8.17□□□□□ -1.1
CUX1-219ENST00000606749 CCINQ13939 588 aa8.17□□□□□ -1.1
CUX1-219ENST00000606749 LRRC32Q14392 662 aa8.17□□□□□ -1.1
CUX1-219ENST00000606749 CCDC142Q17RM4 750 aa8.17□□□□□ -1.1
CUX1-219ENST00000606749 FOXD4L6Q3SYB3 417 aaPredicted RBP8.17□□□□□ -1.1
CUX1-219ENST00000606749 CFAP221Q4G0U5 840 aa8.17□□□□□ -1.1
CUX1-219ENST00000606749 FOXD4L3Q6VB84 417 aaPredicted RBP8.17□□□□□ -1.1
CUX1-219ENST00000606749 SPATA2LQ8IUW3 424 aaPredicted RBP8.17□□□□□ -1.1
CUX1-219ENST00000606749 WDR49Q8IV35 697 aa8.17□□□□□ -1.1
CUX1-219ENST00000606749 KBTBD7Q8WVZ9 684 aa8.17□□□□□ -1.1
CUX1-219ENST00000606749 MRPS31Q92665 395 aaKnown RBP8.17□□□□□ -1.1
CUX1-219ENST00000606749 SECISBP2LQ93073 1101 aaKnown RBP8.17□□□□□ -1.1
CUX1-219ENST00000606749 TRMT2BQ96GJ1 504 aaKnown RBP8.17□□□□□ -1.1
CUX1-219ENST00000606749 FUBP3Q96I24 572 aaKnown RBP eCLIP8.17□□□□□ -1.1
CUX1-219ENST00000606749 EBF3Q9H4W6 596 aa8.17□□□□□ -1.1
CUX1-219ENST00000606749 AGPAT3Q9NRZ7 376 aa8.17□□□□□ -1.1
CUX1-219ENST00000606749 C2orf42Q9NWW7 574 aa8.17□□□□□ -1.1
CUX1-219ENST00000606749 UXTQ9UBK9 157 aaPredicted RBP8.17□□□□□ -1.1
CUX1-219ENST00000606749 SMG5Q9UPR3 1016 aaKnown RBP8.17□□□□□ -1.1
CUX1-219ENST00000606749 R3HCC1Q9Y3T6 440 aaKnown RBP8.17□□□□□ -1.1
CUX1-219ENST00000606749 EP300Q09472 2414 aaPredicted RBP8.17□□□□□ -1.1
CUX1-219ENST00000606749 PVALEFA0A1B0GWK0 134 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 K7ESF4 209 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 TRDMT1O14717 391 aaKnown RBP8.16□□□□□ -1.1
CUX1-219ENST00000606749 CLIC2O15247 247 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 HRO43593 1189 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 TADA3O75528 432 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 PAPSS2O95340 614 aaPredicted RBP8.16□□□□□ -1.1
CUX1-219ENST00000606749 PDGFRBP09619 1106 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 FAM163BP0C2L3 166 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 ZSCAN22P10073 491 aaPredicted RBP8.16□□□□□ -1.1
CUX1-219ENST00000606749 TGM1P22735 817 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 CASP1P29466 404 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 GNL1P36915 607 aaPredicted RBP8.16□□□□□ -1.1
CUX1-219ENST00000606749 MAGEA11P43364 429 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 SNRPFP62306 86 aaKnown RBP8.16□□□□□ -1.1
CUX1-219ENST00000606749 DMWDQ09019 674 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 ZNF268Q14587 947 aaPredicted RBP8.16□□□□□ -1.1
CUX1-219ENST00000606749 PUM1Q14671 1186 aaKnown RBP eCLIP8.16□□□□□ -1.1
CUX1-219ENST00000606749 SNRNP35Q16560 246 aaKnown RBP8.16□□□□□ -1.1
CUX1-219ENST00000606749 TMEM196Q5HYL7 178 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 FAM26FQ5R3K3 315 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 TRIM68Q6AZZ1 485 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 Q6ZS52 159 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 UNC13DQ70J99 1090 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 TRAPPC11Q7Z392 1133 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 SCN4BQ8IWT1 228 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 NELFCDQ8IXH7 590 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 SYNPOQ8N3V7 929 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 GPR161Q8N6U8 529 aaKnown RBP8.16□□□□□ -1.1
CUX1-219ENST00000606749 RIN3Q8TB24 985 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 SCFD1Q8WVM8 642 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 ZNF516Q92618 1163 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 CHFRQ96EP1 664 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 SLC22A12Q96S37 553 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 CYP2S1Q96SQ9 504 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 MMS19Q96T76 1030 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 BLZF1Q9H2G9 400 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 KIF9Q9HAQ2 790 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 MAGEF1Q9HAY2 307 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 SLC39A2Q9NP94 309 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 CRTAC1Q9NQ79 661 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 HPS4Q9NQG7 708 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 DLL3Q9NYJ7 618 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 MAGEC2Q9UBF1 373 aaPredicted RBP8.16□□□□□ -1.1
CUX1-219ENST00000606749 CDH9Q9ULB4 789 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 PCDHA7Q9UN72 937 aa8.16□□□□□ -1.1
CUX1-219ENST00000606749 NUP210Q8TEM1 1887 aaPredicted RBP8.15□□□□□ -1.1
CUX1-219ENST00000606749 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.15□□□□□ -1.1
CUX1-219ENST00000606749 CHURC1-FNTBB4DL54 471 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 F13A1P00488 732 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 HSP90AA1P07900 732 aaKnown RBP8.15□□□□□ -1.1
CUX1-219ENST00000606749 DLATP10515 647 aaKnown RBP8.15□□□□□ -1.1
CUX1-219ENST00000606749 ARSAP15289 507 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 TNNI1P19237 187 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 WARSP23381 471 aaKnown RBP8.15□□□□□ -1.1
CUX1-219ENST00000606749 BDNFP23560 247 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 HOXA6P31267 233 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 HOXC13P31276 330 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 CNR2P34972 360 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 GRIK1P39086 918 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 AFMP43652 599 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 ME1P48163 572 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 FNTBP49356 437 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 GALK1P51570 392 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 CYP2J2P51589 502 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 PSMC1P62191 440 aaKnown RBP8.15□□□□□ -1.1
CUX1-219ENST00000606749 FAM160A1Q05DH4 1040 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 CYP24A1Q07973 514 aa8.15□□□□□ -1.1
CUX1-219ENST00000606749 GRSF1Q12849 480 aaKnown RBP eCLIP8.15□□□□□ -1.1
CUX1-219ENST00000606749 CUL4BQ13620 913 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms