RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 PCED1BQ96HM7 432 aa17.97■□□□□ 0.47
TRIM28-215ENST00000601150 FAXDC2Q96IV6 333 aa17.97■□□□□ 0.47
TRIM28-215ENST00000601150 TNIP3Q96KP6 325 aa17.97■□□□□ 0.47
TRIM28-215ENST00000601150 CYP3A43Q9HB55 503 aa17.97■□□□□ 0.47
TRIM28-215ENST00000601150 COQ4Q9Y3A0 265 aa17.97■□□□□ 0.47
TRIM28-215ENST00000601150 LRRN2O75325 713 aa17.96■□□□□ 0.47
TRIM28-215ENST00000601150 MOSPD3O75425 235 aa17.96■□□□□ 0.47
TRIM28-215ENST00000601150 MBD3O95983 291 aa17.96■□□□□ 0.47
TRIM28-215ENST00000601150 FMO5P49326 533 aa17.96■□□□□ 0.47
TRIM28-215ENST00000601150 GPR15P49685 360 aa17.96■□□□□ 0.47
TRIM28-215ENST00000601150 MARSP56192 900 aaKnown RBP17.96■□□□□ 0.47
TRIM28-215ENST00000601150 NLRP12P59046 1061 aa17.96■□□□□ 0.47
TRIM28-215ENST00000601150 DDR2Q16832 855 aa17.96■□□□□ 0.47
TRIM28-215ENST00000601150 WDR44Q5JSH3 913 aa17.96■□□□□ 0.47
TRIM28-215ENST00000601150 VSTM1Q6UX27 236 aa17.96■□□□□ 0.47
TRIM28-215ENST00000601150 UNC93AQ86WB7 457 aa17.96■□□□□ 0.47
TRIM28-215ENST00000601150 SCN4BQ8IWT1 228 aa17.96■□□□□ 0.47
TRIM28-215ENST00000601150 SHKBP1Q8TBC3 707 aa17.96■□□□□ 0.47
TRIM28-215ENST00000601150 GPR152Q8TDT2 470 aa17.96■□□□□ 0.47
TRIM28-215ENST00000601150 RSAD2Q8WXG1 361 aa17.96■□□□□ 0.47
TRIM28-215ENST00000601150 ZNF334Q9HCZ1 680 aaPredicted RBP17.96■□□□□ 0.47
TRIM28-215ENST00000601150 DACH1Q9UI36 760 aa17.96■□□□□ 0.47
TRIM28-215ENST00000601150 MYH10P35580 1976 aa17.95■□□□□ 0.46
TRIM28-215ENST00000601150 NUP210Q8TEM1 1887 aaPredicted RBP17.95■□□□□ 0.46
TRIM28-215ENST00000601150 A0A1W2PRU2 124 aa17.95■□□□□ 0.46
TRIM28-215ENST00000601150 NRG2O14511 850 aaPredicted RBP17.95■□□□□ 0.46
TRIM28-215ENST00000601150 GPR37L1O60883 481 aa17.95■□□□□ 0.46
TRIM28-215ENST00000601150 CSH1P0DML2 217 aa17.95■□□□□ 0.46
TRIM28-215ENST00000601150 CSH2P0DML3 217 aa17.95■□□□□ 0.46
TRIM28-215ENST00000601150 CCDC192P0DO97 292 aa17.95■□□□□ 0.46
TRIM28-215ENST00000601150 GJA1P17302 382 aa17.95■□□□□ 0.46
TRIM28-215ENST00000601150 BDNFP23560 247 aa17.95■□□□□ 0.46
TRIM28-215ENST00000601150 GABRR2P28476 465 aa17.95■□□□□ 0.46
TRIM28-215ENST00000601150 NDST1P52848 882 aa17.95■□□□□ 0.46
TRIM28-215ENST00000601150 INCA1Q0VD86 236 aa17.95■□□□□ 0.46
TRIM28-215ENST00000601150 DPCR1Q3MIW9 517 aa17.95■□□□□ 0.46
TRIM28-215ENST00000601150 TMEM31Q5JXX7 168 aa17.95■□□□□ 0.46
TRIM28-215ENST00000601150 PARM1Q6UWI2 310 aa17.95■□□□□ 0.46
TRIM28-215ENST00000601150 TRIM67Q6ZTA4 783 aa17.95■□□□□ 0.46
TRIM28-215ENST00000601150 TRIM59Q8IWR1 403 aa17.95■□□□□ 0.46
TRIM28-215ENST00000601150 SLC44A3Q8N4M1 653 aa17.95■□□□□ 0.46
TRIM28-215ENST00000601150 B3GNT5Q9BYG0 378 aa17.95■□□□□ 0.46
TRIM28-215ENST00000601150 GPR88Q9GZN0 384 aa17.95■□□□□ 0.46
TRIM28-215ENST00000601150 ELOVL4Q9GZR5 314 aa17.95■□□□□ 0.46
TRIM28-215ENST00000601150 NUMBLQ9Y6R0 609 aa17.95■□□□□ 0.46
TRIM28-215ENST00000601150 ATP8B3O60423 1300 aa17.95■□□□□ 0.46
TRIM28-215ENST00000601150 ZNF638Q14966 1978 aaKnown RBP17.94■□□□□ 0.46
TRIM28-215ENST00000601150 FAM86C2PA6NEL3 165 aa17.94■□□□□ 0.46
TRIM28-215ENST00000601150 PMM2O15305 246 aa17.94■□□□□ 0.46
TRIM28-215ENST00000601150 HMGA1P17096 107 aaKnown RBP17.94■□□□□ 0.46
TRIM28-215ENST00000601150 TRIM21P19474 475 aaKnown RBP17.94■□□□□ 0.46
TRIM28-215ENST00000601150 CDC25CP30307 473 aa17.94■□□□□ 0.46
TRIM28-215ENST00000601150 GRIK1P39086 918 aa17.94■□□□□ 0.46
TRIM28-215ENST00000601150 SIGLEC14Q08ET2 396 aa17.94■□□□□ 0.46
TRIM28-215ENST00000601150 TEAD2Q15562 447 aa17.94■□□□□ 0.46
TRIM28-215ENST00000601150 SDHAF4Q5VUM1 108 aa17.94■□□□□ 0.46
TRIM28-215ENST00000601150 GAREM2Q75VX8 874 aa17.94■□□□□ 0.46
TRIM28-215ENST00000601150 ACOT1Q86TX2 421 aa17.94■□□□□ 0.46
TRIM28-215ENST00000601150 CRYBG2Q8N1P7 616 aa17.94■□□□□ 0.46
TRIM28-215ENST00000601150 FGF14Q92915 247 aa17.94■□□□□ 0.46
TRIM28-215ENST00000601150 CEP295NLQ96MC4 621 aa17.94■□□□□ 0.46
TRIM28-215ENST00000601150 GCNAQ96QF7 691 aa17.94■□□□□ 0.46
TRIM28-215ENST00000601150 MED15Q96RN5 788 aa17.94■□□□□ 0.46
TRIM28-215ENST00000601150 DNAI2Q9GZS0 605 aa17.94■□□□□ 0.46
TRIM28-215ENST00000601150 SMOC2Q9H3U7 446 aa17.94■□□□□ 0.46
TRIM28-215ENST00000601150 IL21Q9HBE4 155 aa17.94■□□□□ 0.46
TRIM28-215ENST00000601150 C11orf16Q9NQ32 467 aa17.94■□□□□ 0.46
TRIM28-215ENST00000601150 HMGXB4Q9UGU5 601 aa17.94■□□□□ 0.46
TRIM28-215ENST00000601150 DUSP12Q9UNI6 340 aa17.94■□□□□ 0.46
TRIM28-215ENST00000601150 TECTAO75443 2155 aa17.94■□□□□ 0.46
TRIM28-215ENST00000601150 SLC38A8A6NNN8 435 aa17.93■□□□□ 0.46
TRIM28-215ENST00000601150 TRIM66O15016 1216 aa17.93■□□□□ 0.46
TRIM28-215ENST00000601150 P4HA2O15460 535 aa17.93■□□□□ 0.46
TRIM28-215ENST00000601150 NOL4O94818 638 aa17.93■□□□□ 0.46
TRIM28-215ENST00000601150 CD58P19256 250 aa17.93■□□□□ 0.46
TRIM28-215ENST00000601150 ANXA13P27216 316 aa17.93■□□□□ 0.46
TRIM28-215ENST00000601150 ERCC5P28715 1186 aaPredicted RBP17.93■□□□□ 0.46
TRIM28-215ENST00000601150 CETN1Q12798 172 aa17.93■□□□□ 0.46
TRIM28-215ENST00000601150 TPD52L1Q16890 204 aaPredicted RBP17.93■□□□□ 0.46
TRIM28-215ENST00000601150 ARHGAP15Q53QZ3 475 aa17.93■□□□□ 0.46
TRIM28-215ENST00000601150 POTEHQ6S545 545 aa17.93■□□□□ 0.46
TRIM28-215ENST00000601150 RBM43Q6ZSC3 357 aaKnown RBP17.93■□□□□ 0.46
TRIM28-215ENST00000601150 TTC39CQ8N584 583 aa17.93■□□□□ 0.46
TRIM28-215ENST00000601150 STKLD1Q8NE28 680 aa17.93■□□□□ 0.46
TRIM28-215ENST00000601150 ST13P5Q8NFI4 369 aaPredicted RBP17.93■□□□□ 0.46
TRIM28-215ENST00000601150 TATDN2Q93075 761 aa17.93■□□□□ 0.46
TRIM28-215ENST00000601150 TRMT2BQ96GJ1 504 aaKnown RBP17.93■□□□□ 0.46
TRIM28-215ENST00000601150 SPATA17Q96L03 361 aa17.93■□□□□ 0.46
TRIM28-215ENST00000601150 ZNF518BQ9C0D4 1074 aa17.93■□□□□ 0.46
TRIM28-215ENST00000601150 ATXN3LQ9H3M9 355 aa17.93■□□□□ 0.46
TRIM28-215ENST00000601150 SLITRK6Q9H5Y7 841 aa17.93■□□□□ 0.46
TRIM28-215ENST00000601150 MAGED2Q9UNF1 606 aaPredicted RBP17.93■□□□□ 0.46
TRIM28-215ENST00000601150 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.93■□□□□ 0.46
TRIM28-215ENST00000601150 TMEM221A6NGB7 291 aa17.92■□□□□ 0.46
TRIM28-215ENST00000601150 M0R296 226 aa17.92■□□□□ 0.46
TRIM28-215ENST00000601150 CLDN5O00501 218 aa17.92■□□□□ 0.46
TRIM28-215ENST00000601150 CILPO75339 1184 aa17.92■□□□□ 0.46
TRIM28-215ENST00000601150 ECI2O75521 394 aa17.92■□□□□ 0.46
TRIM28-215ENST00000601150 AFPP02771 609 aaKnown RBP17.92■□□□□ 0.46
TRIM28-215ENST00000601150 KCNH2Q12809 1159 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms