RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 MYCT1Q8N699 235 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 FAM184AQ8NB25 1140 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 ZSWIM2Q8NEG5 633 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 RPLP0P6Q8NHW5 317 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 USP33Q8TEY7 942 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 LEO1Q8WVC0 666 aaPredicted RBP6.59□□□□□ -1.35
VRK3-220ENST00000600259 OSCP1Q8WVF1 389 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 GATA6Q92908 595 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 CD101Q93033 1021 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 TRMT2BQ96GJ1 504 aaKnown RBP6.59□□□□□ -1.35
VRK3-220ENST00000600259 P2RY13Q9BPV8 354 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 ACBD6Q9BR61 282 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 PYM1Q9BRP8 204 aaKnown RBP6.59□□□□□ -1.35
VRK3-220ENST00000600259 PI4K2AQ9BTU6 479 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 KIF9Q9HAQ2 790 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 PARVGQ9HBI0 331 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 SH2B1Q9NRF2 756 aaPredicted RBP6.59□□□□□ -1.35
VRK3-220ENST00000600259 ABI2Q9NYB9 513 aaPredicted RBP6.59□□□□□ -1.35
VRK3-220ENST00000600259 L1RE1Q9UN81 338 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 INVSQ9Y283 1065 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 PCDHB5Q9Y5E4 795 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 ASPMQ8IZT6 3477 aa6.59□□□□□ -1.35
VRK3-220ENST00000600259 KIF26AQ9ULI4 1882 aaPredicted RBP6.59□□□□□ -1.35
VRK3-220ENST00000600259 SCN1AP35498 2009 aa6.59□□□□□ -1.36
VRK3-220ENST00000600259 GON4LQ3T8J9 2241 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 A0A0A0MRY4 1105 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 PATE3B3GLJ2 98 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 HCRTO43612 131 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 PRPF40AO75400 957 aaKnown RBP6.58□□□□□ -1.36
VRK3-220ENST00000600259 RHOBTB1O94844 696 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 CAPNS1P04632 268 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 SPINK2P20155 84 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 CSRP1P21291 193 aaKnown RBP6.58□□□□□ -1.36
VRK3-220ENST00000600259 BCKDHBP21953 392 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 NOVA1P51513 510 aaKnown RBP6.58□□□□□ -1.36
VRK3-220ENST00000600259 AMPD2Q01433 879 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 CREB5Q02930 508 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 FAM160A1Q05DH4 1040 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 KCNA1Q09470 495 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 MESP2Q0VG99 397 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 BFSP1Q12934 665 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 GNL2Q13823 731 aaKnown RBP6.58□□□□□ -1.36
VRK3-220ENST00000600259 DHX8Q14562 1220 aaKnown RBP6.58□□□□□ -1.36
VRK3-220ENST00000600259 MTF1Q14872 753 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 TAF12Q16514 161 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 RILPL1Q5EBL4 403 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 PMS2CLQ68D20 193 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 ADALQ6DHV7 355 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 FAM171BQ6P995 826 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 UNQ6494/PRO21346Q6UXR6 183 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 TMEM92Q6UXU6 159 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 METTL23Q86XA0 190 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 ADGRG2Q8IZP9 1017 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 PDCL2Q8N4E4 241 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 C1orf127Q8N9H9 656 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 OLIG1Q8TAK6 271 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 MRPS31Q92665 395 aaKnown RBP6.58□□□□□ -1.36
VRK3-220ENST00000600259 RAD54LQ92698 747 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 FAM84AQ96KN4 292 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 AK8Q96MA6 479 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 GCNAQ96QF7 691 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 EDEM2Q9BV94 578 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 TMEM206Q9H813 350 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 ABCB6Q9NP58 842 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 DUS2Q9NX74 493 aaKnown RBP6.58□□□□□ -1.36
VRK3-220ENST00000600259 GDAP2Q9NXN4 497 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 SIX4Q9UIU6 781 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 GTF3C4Q9UKN8 822 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 AGO2Q9UKV8 859 aaKnown RBP6.58□□□□□ -1.36
VRK3-220ENST00000600259 ZMIZ1Q9ULJ6 1067 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 WNT6Q9Y6F9 365 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 EML5Q05BV3 1969 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 PCNX2A6NKB5 2137 aa6.58□□□□□ -1.36
VRK3-220ENST00000600259 NUP210Q8TEM1 1887 aaPredicted RBP6.58□□□□□ -1.36
VRK3-220ENST00000600259 ITPR1Q14643 2758 aa6.57□□□□□ -1.36
VRK3-220ENST00000600259 C2orf78A6NCI8 922 aa6.57□□□□□ -1.36
VRK3-220ENST00000600259 K7ENM7 598 aa6.57□□□□□ -1.36
VRK3-220ENST00000600259 ATP2C2O75185 946 aa6.57□□□□□ -1.36
VRK3-220ENST00000600259 FAM13AO94988 1023 aa6.57□□□□□ -1.36
VRK3-220ENST00000600259 USP17L7P0C7H9 530 aa6.57□□□□□ -1.36
VRK3-220ENST00000600259 CEACAM1P13688 526 aa6.57□□□□□ -1.36
VRK3-220ENST00000600259 PLCG1P19174 1290 aa6.57□□□□□ -1.36
VRK3-220ENST00000600259 ACAT1P24752 427 aaKnown RBP6.57□□□□□ -1.36
VRK3-220ENST00000600259 DDIT3P35638 169 aa6.57□□□□□ -1.36
VRK3-220ENST00000600259 MAGEA11P43364 429 aa6.57□□□□□ -1.36
VRK3-220ENST00000600259 DGKEP52429 567 aa6.57□□□□□ -1.36
VRK3-220ENST00000600259 RPL10AP62906 217 aaKnown RBP6.57□□□□□ -1.36
VRK3-220ENST00000600259 KARSQ15046 597 aaKnown RBP6.57□□□□□ -1.36
VRK3-220ENST00000600259 ELF2Q15723 593 aa6.57□□□□□ -1.36
VRK3-220ENST00000600259 NFE2Q16621 373 aaPredicted RBP6.57□□□□□ -1.36
VRK3-220ENST00000600259 SOWAHAQ2M3V2 549 aa6.57□□□□□ -1.36
VRK3-220ENST00000600259 SV2CQ496J9 727 aa6.57□□□□□ -1.36
VRK3-220ENST00000600259 CFAP221Q4G0U5 840 aa6.57□□□□□ -1.36
VRK3-220ENST00000600259 INTS6LQ5JSJ4 861 aaKnown RBP6.57□□□□□ -1.36
VRK3-220ENST00000600259 SH3PXD2AQ5TCZ1 1133 aa6.57□□□□□ -1.36
VRK3-220ENST00000600259 SLFN12LQ6IEE8 588 aa6.57□□□□□ -1.36
VRK3-220ENST00000600259 CC2D1AQ6P1N0 951 aaPredicted RBP6.57□□□□□ -1.36
VRK3-220ENST00000600259 USP49Q70CQ1 688 aa6.57□□□□□ -1.36
VRK3-220ENST00000600259 NT5DC4Q86YG4 428 aa6.57□□□□□ -1.36
VRK3-220ENST00000600259 SFTPA1Q8IWL2 248 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms