RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 TRIM69Q86WT6 500 aa21.29■■□□□ 1
UPF1-207ENST00000599848 CGRRF1Q99675 332 aa21.29■■□□□ 1
UPF1-207ENST00000599848 BLOC1S6Q9UL45 172 aa21.29■■□□□ 1
UPF1-207ENST00000599848 GYS1P13807 737 aa21.29■■□□□ 1
UPF1-207ENST00000599848 IGFBP4P22692 258 aa21.29■■□□□ 1
UPF1-207ENST00000599848 STIP1P31948 543 aaKnown RBP21.29■■□□□ 1
UPF1-207ENST00000599848 DEFB128Q7Z7B8 93 aa21.29■■□□□ 1
UPF1-207ENST00000599848 DHX40Q8IX18 779 aaKnown RBP21.29■■□□□ 1
UPF1-207ENST00000599848 FMR1NBQ8N0W7 255 aaPredicted RBP21.29■■□□□ 1
UPF1-207ENST00000599848 MCOLN3Q8TDD5 553 aa21.29■■□□□ 1
UPF1-207ENST00000599848 AHSPQ9NZD4 102 aa21.29■■□□□ 1
UPF1-207ENST00000599848 ACO1P21399 889 aaKnown RBP21.29■■□□□ 1
UPF1-207ENST00000599848 DEFB115Q30KQ5 88 aa21.29■■□□□ 1
UPF1-207ENST00000599848 KDELC2Q7Z4H8 507 aa21.29■■□□□ 1
UPF1-207ENST00000599848 MYO1HQ8N1T3 1032 aa21.29■■□□□ 1
UPF1-207ENST00000599848 TFB1MQ8WVM0 346 aaKnown RBP21.29■■□□□ 1
UPF1-207ENST00000599848 CYP4F11Q9HBI6 524 aa21.29■■□□□ 1
UPF1-207ENST00000599848 FKBP1AP62942 108 aaKnown RBP21.28■■□□□ 1
UPF1-207ENST00000599848 TMEM259Q4ZIN3 620 aa21.28■■□□□ 1
UPF1-207ENST00000599848 RARS2Q5T160 578 aaKnown RBP21.28■■□□□ 1
UPF1-207ENST00000599848 TXNRD3Q86VQ6 643 aa21.28■■□□□ 1
UPF1-207ENST00000599848 RPS6KB2Q9UBS0 482 aa21.28■■□□□ 1
UPF1-207ENST00000599848 EIF3LQ9Y262 564 aaKnown RBP21.28■■□□□ 1
UPF1-207ENST00000599848 DCCP43146 1447 aa21.28■■□□□ 1
UPF1-207ENST00000599848 LARGE1O95461 756 aa21.28■■□□□ 1
UPF1-207ENST00000599848 CYP2A6P11509 494 aaPredicted RBP21.28■■□□□ 1
UPF1-207ENST00000599848 CACHD1Q5VU97 1274 aa21.28■■□□□ 1
UPF1-207ENST00000599848 FKBP1CQ5VVH2 108 aa21.28■■□□□ 1
UPF1-207ENST00000599848 PCNX4Q63HM2 1172 aa21.28■■□□□ 1
UPF1-207ENST00000599848 FAR2Q96K12 515 aa21.28■■□□□ 1
UPF1-207ENST00000599848 F5H423 210 aaPredicted RBP21.28■■□□□ 1
UPF1-207ENST00000599848 F8W810 466 aa21.28■■□□□ 1
UPF1-207ENST00000599848 SLC18A3Q16572 532 aa21.28■■□□□ 1
UPF1-207ENST00000599848 SLC25A41Q8N5S1 370 aa21.28■■□□□ 1
UPF1-207ENST00000599848 NAT9Q9BTE0 207 aa21.28■■□□□ 1
UPF1-207ENST00000599848 APOL5Q9BWW9 433 aa21.28■■□□□ 1
UPF1-207ENST00000599848 SOAT1P35610 550 aa21.28■■□□□ 1
UPF1-207ENST00000599848 MRPL1Q9BYD6 325 aaKnown RBP21.28■■□□□ 1
UPF1-207ENST00000599848 CLPBQ9H078 707 aa21.28■■□□□ 1
UPF1-207ENST00000599848 KIAA1683Q9H0B3 1180 aa21.28■■□□□ 1
UPF1-207ENST00000599848 A0A088AWK7 358 aa21.27■■□□□ 1
UPF1-207ENST00000599848 PRR23AA6NEV1 266 aa21.27■■□□□ 1
UPF1-207ENST00000599848 NCAM2O15394 837 aa21.27■■□□□ 1
UPF1-207ENST00000599848 TBC1D12O60347 775 aa21.27■■□□□ 1
UPF1-207ENST00000599848 PGK2P07205 417 aa21.27■■□□□ 1
UPF1-207ENST00000599848 ZNF10P21506 573 aaPredicted RBP21.27■■□□□ 1
UPF1-207ENST00000599848 ZNF211Q13398 564 aaPredicted RBP21.27■■□□□ 1
UPF1-207ENST00000599848 PPP1R16AQ96I34 528 aa21.27■■□□□ 1
UPF1-207ENST00000599848 LIMA1Q9UHB6 759 aaKnown RBP21.27■■□□□ 1
UPF1-207ENST00000599848 GLI2P10070 1586 aa21.27■■□□□ 1
UPF1-207ENST00000599848 H3BRB1 525 aa21.27■■□□□ 1
UPF1-207ENST00000599848 M0QYT0 321 aa21.27■■□□□ 1
UPF1-207ENST00000599848 PHF2O75151 1096 aa21.27■■□□□ 1
UPF1-207ENST00000599848 KLRC1P26715 233 aa21.27■■□□□ 1
UPF1-207ENST00000599848 HALP42357 657 aa21.27■■□□□ 1
UPF1-207ENST00000599848 CASP8Q14790 479 aa21.27■■□□□ 1
UPF1-207ENST00000599848 COBLL1Q53SF7 1204 aa21.27■■□□□ 1
UPF1-207ENST00000599848 FEZF2Q8TBJ5 459 aa21.27■■□□□ 1
UPF1-207ENST00000599848 TUT1Q9H6E5 874 aaKnown RBP21.27■■□□□ 1
UPF1-207ENST00000599848 TASP1Q9H6P5 420 aa21.27■■□□□ 1
UPF1-207ENST00000599848 ZSCAN32Q9NX65 697 aa21.27■■□□□ 1
UPF1-207ENST00000599848 ZNF521Q96K83 1311 aa21.27■■□□□ 1
UPF1-207ENST00000599848 NFIAQ12857 509 aa21.27■■□□□ 1
UPF1-207ENST00000599848 BEND6Q5SZJ8 279 aaPredicted RBP21.27■■□□□ 1
UPF1-207ENST00000599848 ITGA11Q9UKX5 1188 aa21.27■■□□□ 1
UPF1-207ENST00000599848 TRPV2Q9Y5S1 764 aa21.27■■□□□ 1
UPF1-207ENST00000599848 CXCL9Q07325 125 aa21.27■■□□□ 1
UPF1-207ENST00000599848 PKP1Q13835 747 aa21.27■■□□□ 1
UPF1-207ENST00000599848 BTN2A2Q8WVV5 523 aa21.27■■□□□ 1
UPF1-207ENST00000599848 EPB41L3Q9Y2J2 1087 aaPredicted RBP21.27■■□□□ 1
UPF1-207ENST00000599848 SLC12A8A0AV02 714 aa21.26■□□□□ 0.99
UPF1-207ENST00000599848 OPLAHO14841 1288 aa21.26■□□□□ 0.99
UPF1-207ENST00000599848 PCDH8O95206 1070 aa21.26■□□□□ 0.99
UPF1-207ENST00000599848 ATP5BP06576 529 aaKnown RBP21.26■□□□□ 0.99
UPF1-207ENST00000599848 YY1P25490 414 aa21.26■□□□□ 0.99
UPF1-207ENST00000599848 ZNF135P52742 658 aaPredicted RBP21.26■□□□□ 0.99
UPF1-207ENST00000599848 DMC1Q14565 340 aa21.26■□□□□ 0.99
UPF1-207ENST00000599848 DTX3LQ8TDB6 740 aa21.26■□□□□ 0.99
UPF1-207ENST00000599848 AHCYL2Q96HN2 611 aaKnown RBP21.26■□□□□ 0.99
UPF1-207ENST00000599848 FAM167BQ9BTA0 163 aa21.26■□□□□ 0.99
UPF1-207ENST00000599848 UBE2OQ9C0C9 1292 aaKnown RBP21.26■□□□□ 0.99
UPF1-207ENST00000599848 IQGAP3Q86VI3 1631 aa21.26■□□□□ 0.99
UPF1-207ENST00000599848 PXDNLA1KZ92 1463 aa21.26■□□□□ 0.99
UPF1-207ENST00000599848 DSG3P32926 999 aa21.26■□□□□ 0.99
UPF1-207ENST00000599848 SERPINB10P48595 397 aa21.26■□□□□ 0.99
UPF1-207ENST00000599848 ATP8B4Q8TF62 1192 aa21.26■□□□□ 0.99
UPF1-207ENST00000599848 ITIH6Q6UXX5 1313 aa21.26■□□□□ 0.99
UPF1-207ENST00000599848 CCDC189A1A4V9 331 aa21.26■□□□□ 0.99
UPF1-207ENST00000599848 M0R3G1 203 aa21.26■□□□□ 0.99
UPF1-207ENST00000599848 ZNF200P98182 395 aaPredicted RBP21.26■□□□□ 0.99
UPF1-207ENST00000599848 SLC7A5Q01650 507 aa21.26■□□□□ 0.99
UPF1-207ENST00000599848 AGAP9Q5VTM2 703 aa21.26■□□□□ 0.99
UPF1-207ENST00000599848 MTSS1LQ765P7 747 aa21.26■□□□□ 0.99
UPF1-207ENST00000599848 TEX9Q8N6V9 391 aa21.26■□□□□ 0.99
UPF1-207ENST00000599848 PARD6BQ9BYG5 372 aa21.26■□□□□ 0.99
UPF1-207ENST00000599848 IFNA14P01570 189 aa21.26■□□□□ 0.99
UPF1-207ENST00000599848 KCNK10P57789 538 aa21.26■□□□□ 0.99
UPF1-207ENST00000599848 CUL2Q13617 745 aa21.26■□□□□ 0.99
UPF1-207ENST00000599848 PLEKHM3Q6ZWE6 761 aa21.26■□□□□ 0.99
UPF1-207ENST00000599848 B4GALNT2Q8NHY0 566 aa21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms