RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 SAAL1Q96ER3 474 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 ZSCAN31Q96LW9 406 aaPredicted RBP9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 GCNAQ96QF7 691 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 FAM83CQ9BQN1 747 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 LSM14BQ9BX40 385 aaKnown RBP9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 PARVGQ9HBI0 331 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 TRPC7Q9HCX4 862 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 DPP3Q9NY33 737 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 TBC1D7Q9P0N9 293 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 SLC8A2Q9UPR5 921 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 WNT6Q9Y6F9 365 aa9.33□□□□□ -0.92
SHKBP1-220ENST00000599716 GON4LQ3T8J9 2241 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 GOLGA8IPA6NC78 632 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 GOLGA8JA6NMD2 632 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 XPOTO43592 962 aaKnown RBP9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 PRPF40AO75400 957 aaKnown RBP9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 EPN2O95208 641 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 TOP3BO95985 862 aaKnown RBP9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 PIGRP01833 764 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 GJB2P29033 226 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 CDC25CP30307 473 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 ADSSP30520 456 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 POLR2BP30876 1174 aaKnown RBP9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 CNR2P34972 360 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 AVPR1AP37288 418 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 MPLP40238 635 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 RAP1GAPP47736 663 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 TUFMP49411 452 aaKnown RBP9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 TAF6P49848 677 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 ZNF131P52739 623 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 C19orf57Q0VDD7 668 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 GRSF1Q12849 480 aaKnown RBP eCLIP9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 BFSP1Q12934 665 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 PSMD2Q13200 908 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 RILPL1Q5EBL4 403 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 LMBRD2Q68DH5 695 aaPredicted RBP9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 CACNA2D4Q7Z3S7 1137 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 OSTM1Q86WC4 334 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 SFR1Q86XK3 245 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 SFTPA1Q8IWL2 248 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 RASSF8Q8NHQ8 419 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 NOC3LQ8WTT2 800 aaKnown RBP9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 RAD54LQ92698 747 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 MSANTD3Q96H12 275 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 FGFBP2Q9BYJ0 223 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 TPSD1Q9BZJ3 242 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 ZDHHC4Q9NPG8 344 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 TDP1Q9NUW8 608 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 THG1LQ9NWX6 298 aaKnown RBP9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 PPP4R2Q9NY27 417 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 OBP2AQ9NY56 170 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 AGO2Q9UKV8 859 aaKnown RBP9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 ODF2LQ9ULJ1 636 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 L1RE1Q9UN81 338 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 FARP1Q9Y4F1 1045 aaPredicted RBP9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 KIAA1549LQ6ZVL6 1849 aa9.32□□□□□ -0.92
SHKBP1-220ENST00000599716 ANAPC1Q9H1A4 1944 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 C2orf78A6NCI8 922 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 KPNA7A9QM74 516 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 PATE3B3GLJ2 98 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 H3BQV1 296 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 ATP2C2O75185 946 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 TBCAO75347 108 aaKnown RBP9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 ITGB3P05106 788 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 ZNF806P0C7X5 589 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 GJA4P35212 333 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 UBA7P41226 1012 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 SEC13P55735 322 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 TFAMQ00059 246 aaKnown RBP9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 PLCB2Q00722 1185 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 CREB5Q02930 508 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 ZNF252P-AS1Q0IIN9 211 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 PLK5Q496M5 336 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 PLA2G2CQ5R387 149 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 TTC30AQ86WT1 665 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 METTL23Q86XA0 190 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 THEM5Q8N1Q8 247 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 PDCL2Q8N4E4 241 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 ARL14EPQ8N8R7 260 aaPredicted RBP9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 SPPL2BQ8TCT7 592 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 POMGNT1Q8WZA1 660 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 EPSTI1Q96J88 318 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 FAM213AQ9BRX8 229 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 SCNM1Q9BWG6 230 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 OXCT2Q9BYC2 517 aaPredicted RBP9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 DUSP15Q9H1R2 295 aaPredicted RBP9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 LINC00597Q9H2U6 94 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 KCND2Q9NZV8 630 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 GTF3C4Q9UKN8 822 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 AGAP1Q9UPQ3 857 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 PCDHB5Q9Y5E4 795 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 LRRK2Q5S007 2527 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 NUP205Q92621 2012 aa9.31□□□□□ -0.92
SHKBP1-220ENST00000599716 MYOFQ9NZM1 2061 aa9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 THADAQ6YHU6 1953 aa9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 CACNA1EQ15878 2313 aa9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 C4orf47A7E2U8 309 aa9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 H0YCG3 227 aa9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 TRDMT1O14717 391 aaKnown RBP9.3□□□□□ -0.92
SHKBP1-220ENST00000599716 FGF19O95750 216 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms