RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 STX10O60499 249 aa17.22■□□□□ 0.35
TRIM28-213ENST00000598355 ECI2O75521 394 aa17.22■□□□□ 0.35
TRIM28-213ENST00000598355 NOL4O94818 638 aa17.22■□□□□ 0.35
TRIM28-213ENST00000598355 MYL4P12829 197 aa17.22■□□□□ 0.35
TRIM28-213ENST00000598355 P4HA1P13674 534 aa17.22■□□□□ 0.35
TRIM28-213ENST00000598355 GPR15P49685 360 aa17.22■□□□□ 0.35
TRIM28-213ENST00000598355 CDR1P51861 262 aa17.22■□□□□ 0.35
TRIM28-213ENST00000598355 CDH8P55286 799 aa17.22■□□□□ 0.35
TRIM28-213ENST00000598355 MARSP56192 900 aaKnown RBP17.22■□□□□ 0.35
TRIM28-213ENST00000598355 RPL10AP62906 217 aaKnown RBP17.22■□□□□ 0.35
TRIM28-213ENST00000598355 PAK1Q13153 545 aa17.22■□□□□ 0.35
TRIM28-213ENST00000598355 CAMK4Q16566 473 aa17.22■□□□□ 0.35
TRIM28-213ENST00000598355 CBWD6Q4V339 395 aa17.22■□□□□ 0.35
TRIM28-213ENST00000598355 CBWD3Q5JTY5 395 aa17.22■□□□□ 0.35
TRIM28-213ENST00000598355 CBWD5Q5RIA9 395 aa17.22■□□□□ 0.35
TRIM28-213ENST00000598355 SPOPLQ6IQ16 392 aa17.22■□□□□ 0.35
TRIM28-213ENST00000598355 SCARA5Q6ZMJ2 495 aa17.22■□□□□ 0.35
TRIM28-213ENST00000598355 FILIP1Q7Z7B0 1213 aa17.22■□□□□ 0.35
TRIM28-213ENST00000598355 TMEM150AQ86TG1 271 aa17.22■□□□□ 0.35
TRIM28-213ENST00000598355 SPATA2LQ8IUW3 424 aaPredicted RBP17.22■□□□□ 0.35
TRIM28-213ENST00000598355 B3GALNT2Q8NCR0 500 aa17.22■□□□□ 0.35
TRIM28-213ENST00000598355 OR6B3Q8NGW1 331 aa17.22■□□□□ 0.35
TRIM28-213ENST00000598355 ELMO3Q96BJ8 720 aa17.22■□□□□ 0.35
TRIM28-213ENST00000598355 MYRFLQ96LU7 910 aa17.22■□□□□ 0.35
TRIM28-213ENST00000598355 RPP25Q9BUL9 199 aaKnown RBP17.22■□□□□ 0.35
TRIM28-213ENST00000598355 ARMCX3Q9UH62 379 aaPredicted RBP17.22■□□□□ 0.35
TRIM28-213ENST00000598355 CTNND2Q9UQB3 1225 aa17.22■□□□□ 0.35
TRIM28-213ENST00000598355 MYO16Q9Y6X6 1858 aa17.22■□□□□ 0.35
TRIM28-213ENST00000598355 NCANO14594 1321 aa17.21■□□□□ 0.35
TRIM28-213ENST00000598355 A0A1W2PRU2 124 aa17.21■□□□□ 0.35
TRIM28-213ENST00000598355 PMM2O15305 246 aa17.21■□□□□ 0.35
TRIM28-213ENST00000598355 LRRN2O75325 713 aa17.21■□□□□ 0.35
TRIM28-213ENST00000598355 TADA3O75528 432 aa17.21■□□□□ 0.35
TRIM28-213ENST00000598355 PDGFRBP09619 1106 aa17.21■□□□□ 0.35
TRIM28-213ENST00000598355 CSH1P0DML2 217 aa17.21■□□□□ 0.35
TRIM28-213ENST00000598355 CSH2P0DML3 217 aa17.21■□□□□ 0.35
TRIM28-213ENST00000598355 GJA1P17302 382 aa17.21■□□□□ 0.35
TRIM28-213ENST00000598355 PTPN1P18031 435 aaKnown RBP17.21■□□□□ 0.35
TRIM28-213ENST00000598355 WEE1P30291 646 aa17.21■□□□□ 0.35
TRIM28-213ENST00000598355 RAP1GAPP47736 663 aa17.21■□□□□ 0.35
TRIM28-213ENST00000598355 TEAD2Q15562 447 aa17.21■□□□□ 0.35
TRIM28-213ENST00000598355 MDH1BQ5I0G3 518 aa17.21■□□□□ 0.35
TRIM28-213ENST00000598355 KLHL10Q6JEL2 608 aa17.21■□□□□ 0.35
TRIM28-213ENST00000598355 FRMD5Q7Z6J6 570 aa17.21■□□□□ 0.35
TRIM28-213ENST00000598355 UNC93AQ86WB7 457 aa17.21■□□□□ 0.35
TRIM28-213ENST00000598355 FBXL13Q8NEE6 735 aa17.21■□□□□ 0.35
TRIM28-213ENST00000598355 SEMA4DQ92854 862 aa17.21■□□□□ 0.35
TRIM28-213ENST00000598355 ELSPBP1Q96BH3 223 aa17.21■□□□□ 0.35
TRIM28-213ENST00000598355 MCRS1Q96EZ8 462 aa17.21■□□□□ 0.35
TRIM28-213ENST00000598355 SPATA17Q96L03 361 aa17.21■□□□□ 0.35
TRIM28-213ENST00000598355 ZSWIM3Q96MP5 696 aa17.21■□□□□ 0.35
TRIM28-213ENST00000598355 GBP4Q96PP9 640 aa17.21■□□□□ 0.35
TRIM28-213ENST00000598355 MED15Q96RN5 788 aa17.21■□□□□ 0.35
TRIM28-213ENST00000598355 IMPG2Q9BZV3 1241 aa17.21■□□□□ 0.35
TRIM28-213ENST00000598355 GPR88Q9GZN0 384 aa17.21■□□□□ 0.35
TRIM28-213ENST00000598355 NIF3L1Q9GZT8 377 aa17.21■□□□□ 0.35
TRIM28-213ENST00000598355 METTL14Q9HCE5 456 aaKnown RBP17.21■□□□□ 0.35
TRIM28-213ENST00000598355 TMEM30AQ9NV96 361 aa17.21■□□□□ 0.35
TRIM28-213ENST00000598355 MIA3Q5JRA6 1907 aa17.21■□□□□ 0.35
TRIM28-213ENST00000598355 A8MXQ7 604 aa17.2■□□□□ 0.34
TRIM28-213ENST00000598355 F11P03951 625 aa17.2■□□□□ 0.34
TRIM28-213ENST00000598355 GABRR2P28476 465 aa17.2■□□□□ 0.34
TRIM28-213ENST00000598355 CDC25CP30307 473 aa17.2■□□□□ 0.34
TRIM28-213ENST00000598355 FAM78AQ5JUQ0 283 aa17.2■□□□□ 0.34
TRIM28-213ENST00000598355 CRYBG2Q8N1P7 616 aa17.2■□□□□ 0.34
TRIM28-213ENST00000598355 GIPC2Q8TF65 315 aa17.2■□□□□ 0.34
TRIM28-213ENST00000598355 SMARCD2Q92925 531 aa17.2■□□□□ 0.34
TRIM28-213ENST00000598355 FAM124BQ9H5Z6 455 aaPredicted RBP17.2■□□□□ 0.34
TRIM28-213ENST00000598355 CYP3A43Q9HB55 503 aa17.2■□□□□ 0.34
TRIM28-213ENST00000598355 RAB20Q9NX57 234 aa17.2■□□□□ 0.34
TRIM28-213ENST00000598355 MAGEC2Q9UBF1 373 aaPredicted RBP17.2■□□□□ 0.34
TRIM28-213ENST00000598355 HMGXB4Q9UGU5 601 aa17.2■□□□□ 0.34
TRIM28-213ENST00000598355 F5P12259 2224 aa17.2■□□□□ 0.34
TRIM28-213ENST00000598355 WDFY4Q6ZS81 3184 aa17.19■□□□□ 0.34
TRIM28-213ENST00000598355 BDNFP23560 247 aa17.19■□□□□ 0.34
TRIM28-213ENST00000598355 NLRP12P59046 1061 aa17.19■□□□□ 0.34
TRIM28-213ENST00000598355 DDR2Q16832 855 aa17.19■□□□□ 0.34
TRIM28-213ENST00000598355 DCAF17Q5H9S7 520 aaPredicted RBP17.19■□□□□ 0.34
TRIM28-213ENST00000598355 STXBP5Q5T5C0 1151 aa17.19■□□□□ 0.34
TRIM28-213ENST00000598355 TRIM59Q8IWR1 403 aa17.19■□□□□ 0.34
TRIM28-213ENST00000598355 STKLD1Q8NE28 680 aa17.19■□□□□ 0.34
TRIM28-213ENST00000598355 GPR152Q8TDT2 470 aa17.19■□□□□ 0.34
TRIM28-213ENST00000598355 TNIP3Q96KP6 325 aa17.19■□□□□ 0.34
TRIM28-213ENST00000598355 C8orf48Q96LL4 319 aa17.19■□□□□ 0.34
TRIM28-213ENST00000598355 KXD1Q9BQD3 176 aa17.19■□□□□ 0.34
TRIM28-213ENST00000598355 TTLL2Q9BWV7 592 aa17.19■□□□□ 0.34
TRIM28-213ENST00000598355 ELOVL4Q9GZR5 314 aa17.19■□□□□ 0.34
TRIM28-213ENST00000598355 NUP62CLQ9H1M0 184 aa17.19■□□□□ 0.34
TRIM28-213ENST00000598355 MMRN2Q9H8L6 949 aa17.19■□□□□ 0.34
TRIM28-213ENST00000598355 WNT16Q9UBV4 365 aa17.19■□□□□ 0.34
TRIM28-213ENST00000598355 RWDD2AQ9UIY3 292 aa17.19■□□□□ 0.34
TRIM28-213ENST00000598355 ZMYM5Q9UJ78 669 aa17.19■□□□□ 0.34
TRIM28-213ENST00000598355 COL4A3Q01955 1670 aa17.18■□□□□ 0.34
TRIM28-213ENST00000598355 SLC38A8A6NNN8 435 aa17.18■□□□□ 0.34
TRIM28-213ENST00000598355 SOBPA7XYQ1 873 aa17.18■□□□□ 0.34
TRIM28-213ENST00000598355 TRIM66O15016 1216 aa17.18■□□□□ 0.34
TRIM28-213ENST00000598355 CILPO75339 1184 aa17.18■□□□□ 0.34
TRIM28-213ENST00000598355 NDST1P52848 882 aa17.18■□□□□ 0.34
TRIM28-213ENST00000598355 CACNA2D1P54289 1103 aa17.18■□□□□ 0.34
TRIM28-213ENST00000598355 SDHAF4Q5VUM1 108 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms