RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 CDKN2BP42772 138 aa20.76■□□□□ 0.91
CLIP3-206ENST00000593074 CNGA2Q16280 664 aa20.76■□□□□ 0.91
CLIP3-206ENST00000593074 ZFYVE27Q5T4F4 411 aa20.76■□□□□ 0.91
CLIP3-206ENST00000593074 BBOF1Q8ND07 529 aa20.76■□□□□ 0.91
CLIP3-206ENST00000593074 RSPH14Q9UHP6 348 aa20.76■□□□□ 0.91
CLIP3-206ENST00000593074 GJD2Q9UKL4 321 aa20.76■□□□□ 0.91
CLIP3-206ENST00000593074 DERAQ9Y315 318 aa20.76■□□□□ 0.91
CLIP3-206ENST00000593074 Q9Y3F1 56 aa20.76■□□□□ 0.91
CLIP3-206ENST00000593074 C3orf70A6NLC5 250 aaPredicted RBP20.75■□□□□ 0.91
CLIP3-206ENST00000593074 M0QYV0 167 aa20.75■□□□□ 0.91
CLIP3-206ENST00000593074 LRCH4O75427 683 aa20.75■□□□□ 0.91
CLIP3-206ENST00000593074 SLC10A3P09131 477 aa20.75■□□□□ 0.91
CLIP3-206ENST00000593074 GPD2P43304 727 aa20.75■□□□□ 0.91
CLIP3-206ENST00000593074 PSEN2P49810 448 aa20.75■□□□□ 0.91
CLIP3-206ENST00000593074 KAZNQ674X7 775 aa20.75■□□□□ 0.91
CLIP3-206ENST00000593074 CATSPER4Q7RTX7 472 aa20.75■□□□□ 0.91
CLIP3-206ENST00000593074 ARFGAP1Q8N6T3 406 aa20.75■□□□□ 0.91
CLIP3-206ENST00000593074 PPP1R13LQ8WUF5 828 aa20.75■□□□□ 0.91
CLIP3-206ENST00000593074 SOCS4Q8WXH5 440 aa20.75■□□□□ 0.91
CLIP3-206ENST00000593074 MCRS1Q96EZ8 462 aa20.75■□□□□ 0.91
CLIP3-206ENST00000593074 KIF12Q96FN5 646 aa20.75■□□□□ 0.91
CLIP3-206ENST00000593074 PLEKHA5Q9HAU0 1116 aa20.75■□□□□ 0.91
CLIP3-206ENST00000593074 TNPO2O14787 897 aaKnown RBP20.74■□□□□ 0.91
CLIP3-206ENST00000593074 MYL3P08590 195 aa20.74■□□□□ 0.91
CLIP3-206ENST00000593074 IRX5P78411 483 aaPredicted RBP20.74■□□□□ 0.91
CLIP3-206ENST00000593074 C6orf118Q5T5N4 469 aa20.74■□□□□ 0.91
CLIP3-206ENST00000593074 CCHCR1Q8TD31 782 aa20.74■□□□□ 0.91
CLIP3-206ENST00000593074 APBA2Q99767 749 aa20.74■□□□□ 0.91
CLIP3-206ENST00000593074 SYNCQ9H7C4 482 aa20.74■□□□□ 0.91
CLIP3-206ENST00000593074 METTL5Q9NRN9 209 aaKnown RBP20.74■□□□□ 0.91
CLIP3-206ENST00000593074 ANAPC5Q9UJX4 755 aa20.74■□□□□ 0.91
CLIP3-206ENST00000593074 DNPEPQ9ULA0 475 aa20.74■□□□□ 0.91
CLIP3-206ENST00000593074 LRRD1A4D1F6 860 aa20.74■□□□□ 0.91
CLIP3-206ENST00000593074 NPTXRO95502 500 aa20.74■□□□□ 0.91
CLIP3-206ENST00000593074 CCT5P48643 541 aa20.74■□□□□ 0.91
CLIP3-206ENST00000593074 NDST1P52848 882 aa20.74■□□□□ 0.91
CLIP3-206ENST00000593074 PCBP1Q15365 356 aaKnown RBP eCLIP20.74■□□□□ 0.91
CLIP3-206ENST00000593074 HEXIM2Q96MH2 286 aaKnown RBP20.74■□□□□ 0.91
CLIP3-206ENST00000593074 CNOT10Q9H9A5 744 aaKnown RBP20.74■□□□□ 0.91
CLIP3-206ENST00000593074 CDHR5Q9HBB8 845 aa20.74■□□□□ 0.91
CLIP3-206ENST00000593074 KIAA1257Q9ULG3 409 aa20.74■□□□□ 0.91
CLIP3-206ENST00000593074 EFR3BQ9Y2G0 817 aa20.74■□□□□ 0.91
CLIP3-206ENST00000593074 HAS3O00219 553 aa20.73■□□□□ 0.91
CLIP3-206ENST00000593074 AGTP01019 485 aa20.73■□□□□ 0.91
CLIP3-206ENST00000593074 KRT7P08729 469 aa20.73■□□□□ 0.91
CLIP3-206ENST00000593074 VPS41P49754 854 aa20.73■□□□□ 0.91
CLIP3-206ENST00000593074 TNFAIP8L3Q5GJ75 292 aa20.73■□□□□ 0.91
CLIP3-206ENST00000593074 MFSD5Q6N075 450 aa20.73■□□□□ 0.91
CLIP3-206ENST00000593074 SLC27A1Q6PCB7 646 aa20.73■□□□□ 0.91
CLIP3-206ENST00000593074 ACSF2Q96CM8 615 aaPredicted RBP20.73■□□□□ 0.91
CLIP3-206ENST00000593074 SNX27Q96L92 541 aa20.73■□□□□ 0.91
CLIP3-206ENST00000593074 DDX23Q9BUQ8 820 aaKnown RBP20.73■□□□□ 0.91
CLIP3-206ENST00000593074 ROPN1BQ9BZX4 212 aaPredicted RBP20.73■□□□□ 0.91
CLIP3-206ENST00000593074 RABEP2Q9H5N1 569 aa20.73■□□□□ 0.91
CLIP3-206ENST00000593074 ROPN1Q9HAT0 212 aaPredicted RBP20.73■□□□□ 0.91
CLIP3-206ENST00000593074 TRPM7Q96QT4 1865 aa20.73■□□□□ 0.91
CLIP3-206ENST00000593074 NDUFAB1O14561 156 aa20.73■□□□□ 0.91
CLIP3-206ENST00000593074 IL1R2P27930 398 aa20.73■□□□□ 0.91
CLIP3-206ENST00000593074 BEX3Q00994 111 aa20.73■□□□□ 0.91
CLIP3-206ENST00000593074 OASLQ15646 514 aaKnown RBP20.73■□□□□ 0.91
CLIP3-206ENST00000593074 TAZQ16635 292 aa20.73■□□□□ 0.91
CLIP3-206ENST00000593074 GSTA5Q7RTV2 222 aa20.73■□□□□ 0.91
CLIP3-206ENST00000593074 SRLQ86TD4 932 aa20.73■□□□□ 0.91
CLIP3-206ENST00000593074 RELL1Q8IUW5 271 aa20.73■□□□□ 0.91
CLIP3-206ENST00000593074 ALLCQ8N6M5 410 aa20.73■□□□□ 0.91
CLIP3-206ENST00000593074 EPS8L3Q8TE67 593 aaKnown RBP20.73■□□□□ 0.91
CLIP3-206ENST00000593074 NKD2Q969F2 451 aaPredicted RBP20.73■□□□□ 0.91
CLIP3-206ENST00000593074 OSMRQ99650 979 aa20.73■□□□□ 0.91
CLIP3-206ENST00000593074 DRG1Q9Y295 367 aaKnown RBP20.73■□□□□ 0.91
CLIP3-206ENST00000593074 DOCK3Q8IZD9 2030 aa20.72■□□□□ 0.91
CLIP3-206ENST00000593074 RGS16O15492 202 aaPredicted RBP20.72■□□□□ 0.91
CLIP3-206ENST00000593074 DARSP14868 501 aaKnown RBP20.72■□□□□ 0.91
CLIP3-206ENST00000593074 CYP3A5P20815 502 aa20.72■□□□□ 0.91
CLIP3-206ENST00000593074 VCPP55072 806 aaKnown RBP20.72■□□□□ 0.91
CLIP3-206ENST00000593074 ADAM17P78536 824 aa20.72■□□□□ 0.91
CLIP3-206ENST00000593074 MYO1EQ12965 1108 aa20.72■□□□□ 0.91
CLIP3-206ENST00000593074 ACAP1Q15027 740 aa20.72■□□□□ 0.91
CLIP3-206ENST00000593074 HADHQ16836 314 aaKnown RBP20.72■□□□□ 0.91
CLIP3-206ENST00000593074 SKIDA1Q1XH10 827 aa20.72■□□□□ 0.91
CLIP3-206ENST00000593074 IZUMO3Q5VZ72 239 aa20.72■□□□□ 0.91
CLIP3-206ENST00000593074 HIBCHQ6NVY1 386 aaPredicted RBP20.72■□□□□ 0.91
CLIP3-206ENST00000593074 LCLAT1Q6UWP7 414 aa20.72■□□□□ 0.91
CLIP3-206ENST00000593074 DNAJB3Q8WWF6 145 aa20.72■□□□□ 0.91
CLIP3-206ENST00000593074 NT5C1AQ9BXI3 368 aa20.72■□□□□ 0.91
CLIP3-206ENST00000593074 RASGRF2O14827 1237 aa20.71■□□□□ 0.91
CLIP3-206ENST00000593074 TTC4O95801 387 aa20.71■□□□□ 0.91
CLIP3-206ENST00000593074 SREBF2Q12772 1141 aa20.71■□□□□ 0.91
CLIP3-206ENST00000593074 HIC1Q14526 733 aa20.71■□□□□ 0.91
CLIP3-206ENST00000593074 NOTUMQ6P988 496 aa20.71■□□□□ 0.91
CLIP3-206ENST00000593074 EMC1Q8N766 993 aa20.71■□□□□ 0.91
CLIP3-206ENST00000593074 UHMK1Q8TAS1 419 aaKnown RBP20.71■□□□□ 0.91
CLIP3-206ENST00000593074 KATNAL1Q9BW62 490 aa20.71■□□□□ 0.91
CLIP3-206ENST00000593074 FOXP3Q9BZS1 431 aa20.71■□□□□ 0.91
CLIP3-206ENST00000593074 STMN4Q9H169 189 aaPredicted RBP20.71■□□□□ 0.91
CLIP3-206ENST00000593074 RRP15Q9Y3B9 282 aaKnown RBP20.71■□□□□ 0.91
CLIP3-206ENST00000593074 TLDC2A0PJX2 215 aa20.71■□□□□ 0.91
CLIP3-206ENST00000593074 IGHA2P01877 340 aa20.71■□□□□ 0.91
CLIP3-206ENST00000593074 ITGAVP06756 1048 aa20.71■□□□□ 0.91
CLIP3-206ENST00000593074 CRHR2Q13324 411 aa20.71■□□□□ 0.91
CLIP3-206ENST00000593074 STILQ15468 1287 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms