RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 TMLHEQ9NVH6 421 aa11.61□□□□□ -0.55
CLIP3-203ENST00000586457 THG1LQ9NWX6 298 aaKnown RBP11.61□□□□□ -0.55
CLIP3-203ENST00000586457 ZNF263O14978 683 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 ABL1P00519 1130 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 PSMC3P17980 439 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 ATF6P18850 670 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 CCR2P41597 374 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 MAGEA11P43364 429 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 MXI1P50539 228 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 CDH8P55286 799 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 GPC5P78333 572 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 ASTLQ6HA08 431 aaPredicted RBP11.6□□□□□ -0.55
CLIP3-203ENST00000586457 TANGO2Q6ICL3 276 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 FAM171BQ6P995 826 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 TTC39CQ8N584 583 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 TRIML1Q8N9V2 468 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 B3GALNT2Q8NCR0 500 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 TTC16Q8NEE8 873 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 SHKBP1Q8TBC3 707 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 PLEKHO2Q8TD55 490 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 CSGALNACT1Q8TDX6 532 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 NELFBQ8WX92 580 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 IRF7Q92985 503 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 MYLPFQ96A32 169 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 ASIC4Q96FT7 647 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 CEP63Q96MT8 703 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 ASB16Q96NS5 453 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 RPP25Q9BUL9 199 aaKnown RBP11.6□□□□□ -0.55
CLIP3-203ENST00000586457 ELOVL4Q9GZR5 314 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 XYLT2Q9H1B5 865 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 DNAJC25Q9H1X3 360 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 TASP1Q9H6P5 420 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 SMYD3Q9H7B4 428 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 VRTNQ9H8Y1 702 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 SLC2A4RGQ9NR83 387 aa11.6□□□□□ -0.55
CLIP3-203ENST00000586457 MYO10Q9HD67 2058 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 DENND4AQ7Z401 1863 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 SLC38A8A6NNN8 435 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 HCRTO43612 131 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 VNN1O95497 513 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 GNA14O95837 355 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 ASS1P00966 412 aaKnown RBP11.59□□□□□ -0.55
CLIP3-203ENST00000586457 DDX6P26196 483 aaKnown RBP eCLIP11.59□□□□□ -0.55
CLIP3-203ENST00000586457 AVPR2P30518 371 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 GDI1P31150 447 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 RAP1GAPP47736 663 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 PDE6CP51160 858 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 CLCN5P51795 746 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 PAK1Q13153 545 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 ZCWPW2Q504Y3 356 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 SLC44A4Q53GD3 710 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 SDHAF4Q5VUM1 108 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 CC2D1AQ6P1N0 951 aaPredicted RBP11.59□□□□□ -0.55
CLIP3-203ENST00000586457 FRMD5Q7Z6J6 570 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 FILIP1Q7Z7B0 1213 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 ACOT1Q86TX2 421 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 UNC93AQ86WB7 457 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 GPIHBP1Q8IV16 184 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 ARID3BQ8IVW6 561 aaPredicted RBP11.59□□□□□ -0.55
CLIP3-203ENST00000586457 FBXL13Q8NEE6 735 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 DEPDC1BQ8WUY9 529 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 PCED1BQ96HM7 432 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 CEP295NLQ96MC4 621 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 ZSWIM3Q96MP5 696 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 IPO9Q96P70 1041 aaKnown RBP11.59□□□□□ -0.55
CLIP3-203ENST00000586457 IRF2BPLQ9H1B7 796 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 KCNH6Q9H252 994 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 CYP3A43Q9HB55 503 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 TRPC7Q9HCX4 862 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 CRTAC1Q9NQ79 661 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 ARHGEF3Q9NR81 526 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 RAB20Q9NX57 234 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 TRPM5Q9NZQ8 1165 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 KIAA1468Q9P260 1216 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 CTNND2Q9UQB3 1225 aa11.59□□□□□ -0.55
CLIP3-203ENST00000586457 MRPS17Q9Y2R5 130 aaKnown RBP11.59□□□□□ -0.55
CLIP3-203ENST00000586457 TRIM49BA6NDI0 452 aa11.58□□□□□ -0.56
CLIP3-203ENST00000586457 HEPACAM2A8MVW5 462 aa11.58□□□□□ -0.56
CLIP3-203ENST00000586457 NCAM2O15394 837 aa11.58□□□□□ -0.56
CLIP3-203ENST00000586457 CCDC192P0DO97 292 aa11.58□□□□□ -0.56
CLIP3-203ENST00000586457 CD58P19256 250 aa11.58□□□□□ -0.56
CLIP3-203ENST00000586457 VIPR2P41587 438 aa11.58□□□□□ -0.56
CLIP3-203ENST00000586457 PPP3CCP48454 512 aa11.58□□□□□ -0.56
CLIP3-203ENST00000586457 GPR15P49685 360 aa11.58□□□□□ -0.56
CLIP3-203ENST00000586457 NDST1P52848 882 aa11.58□□□□□ -0.56
CLIP3-203ENST00000586457 SLC8A3P57103 927 aa11.58□□□□□ -0.56
CLIP3-203ENST00000586457 NLRP12P59046 1061 aa11.58□□□□□ -0.56
CLIP3-203ENST00000586457 YWHAEP62258 255 aaKnown RBP11.58□□□□□ -0.56
CLIP3-203ENST00000586457 NOP14P78316 857 aaKnown RBP11.58□□□□□ -0.56
CLIP3-203ENST00000586457 CYP4F8P98187 520 aa11.58□□□□□ -0.56
CLIP3-203ENST00000586457 PRKCQQ04759 706 aa11.58□□□□□ -0.56
CLIP3-203ENST00000586457 PPP3CAQ08209 521 aa11.58□□□□□ -0.56
CLIP3-203ENST00000586457 IFRD2Q12894 506 aaPredicted RBP11.58□□□□□ -0.56
CLIP3-203ENST00000586457 MORC3Q14149 939 aa11.58□□□□□ -0.56
CLIP3-203ENST00000586457 GRM2Q14416 872 aa11.58□□□□□ -0.56
CLIP3-203ENST00000586457 DENND5BQ6ZUT9 1274 aa11.58□□□□□ -0.56
CLIP3-203ENST00000586457 GAREM2Q75VX8 874 aa11.58□□□□□ -0.56
CLIP3-203ENST00000586457 LIMS2Q7Z4I7 341 aa11.58□□□□□ -0.56
CLIP3-203ENST00000586457 TMC8Q8IU68 726 aa11.58□□□□□ -0.56
CLIP3-203ENST00000586457 MFSD6LQ8IWD5 586 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms