RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 CLIC4Q9Y696 253 aa12.76□□□□□ -0.37
LIG3-209ENST00000586435 MAP1BP46821 2468 aaKnown RBP12.76□□□□□ -0.37
LIG3-209ENST00000586435 VPS37CA5D8V6 355 aaPredicted RBP12.75□□□□□ -0.37
LIG3-209ENST00000586435 GABRDO14764 452 aa12.75□□□□□ -0.37
LIG3-209ENST00000586435 KIAA0391O15091 583 aaKnown RBP12.75□□□□□ -0.37
LIG3-209ENST00000586435 EPN2O95208 641 aa12.75□□□□□ -0.37
LIG3-209ENST00000586435 GCNT3O95395 438 aa12.75□□□□□ -0.37
LIG3-209ENST00000586435 DRD1P21728 446 aa12.75□□□□□ -0.37
LIG3-209ENST00000586435 CDR1P51861 262 aa12.75□□□□□ -0.37
LIG3-209ENST00000586435 CASP5P51878 434 aa12.75□□□□□ -0.37
LIG3-209ENST00000586435 FAM160A1Q05DH4 1040 aa12.75□□□□□ -0.37
LIG3-209ENST00000586435 USP4Q13107 963 aa12.75□□□□□ -0.37
LIG3-209ENST00000586435 MTF1Q14872 753 aa12.75□□□□□ -0.37
LIG3-209ENST00000586435 FBXO43Q4G163 708 aa12.75□□□□□ -0.37
LIG3-209ENST00000586435 TRIM68Q6AZZ1 485 aa12.75□□□□□ -0.37
LIG3-209ENST00000586435 CC2D1AQ6P1N0 951 aaPredicted RBP12.75□□□□□ -0.37
LIG3-209ENST00000586435 CCDC73Q6ZRK6 1079 aa12.75□□□□□ -0.37
LIG3-209ENST00000586435 CACNA2D4Q7Z3S7 1137 aa12.75□□□□□ -0.37
LIG3-209ENST00000586435 CAMKK1Q8N5S9 505 aa12.75□□□□□ -0.37
LIG3-209ENST00000586435 ZSWIM2Q8NEG5 633 aa12.75□□□□□ -0.37
LIG3-209ENST00000586435 DDX1Q92499 740 aaKnown RBP12.75□□□□□ -0.37
LIG3-209ENST00000586435 EXOC4Q96A65 974 aa12.75□□□□□ -0.37
LIG3-209ENST00000586435 SAAL1Q96ER3 474 aa12.75□□□□□ -0.37
LIG3-209ENST00000586435 KMT2BQ9UMN6 2715 aaPredicted RBP12.75□□□□□ -0.37
LIG3-209ENST00000586435 MAGED2Q9UNF1 606 aaPredicted RBP12.75□□□□□ -0.37
LIG3-209ENST00000586435 SLC8A2Q9UPR5 921 aa12.75□□□□□ -0.37
LIG3-209ENST00000586435 NUP205Q92621 2012 aa12.74□□□□□ -0.37
LIG3-209ENST00000586435 RNF40O75150 1001 aa12.74□□□□□ -0.37
LIG3-209ENST00000586435 RPP40O75818 363 aaKnown RBP12.74□□□□□ -0.37
LIG3-209ENST00000586435 ARSAP15289 507 aa12.74□□□□□ -0.37
LIG3-209ENST00000586435 TCF3P15923 654 aa12.74□□□□□ -0.37
LIG3-209ENST00000586435 CYP2F1P24903 491 aa12.74□□□□□ -0.37
LIG3-209ENST00000586435 PCSK1P29120 753 aa12.74□□□□□ -0.37
LIG3-209ENST00000586435 HOXC13P31276 330 aa12.74□□□□□ -0.37
LIG3-209ENST00000586435 RAP1GAPP47736 663 aa12.74□□□□□ -0.37
LIG3-209ENST00000586435 LHX1P48742 406 aa12.74□□□□□ -0.37
LIG3-209ENST00000586435 RBP5P82980 135 aa12.74□□□□□ -0.37
LIG3-209ENST00000586435 RESTQ13127 1097 aa12.74□□□□□ -0.37
LIG3-209ENST00000586435 ZNF77Q15935 545 aa12.74□□□□□ -0.37
LIG3-209ENST00000586435 DDR2Q16832 855 aa12.74□□□□□ -0.37
LIG3-209ENST00000586435 PPM1JQ5JR12 505 aa12.74□□□□□ -0.37
LIG3-209ENST00000586435 DPH6Q7L8W6 267 aa12.74□□□□□ -0.37
LIG3-209ENST00000586435 LIMS2Q7Z4I7 341 aa12.74□□□□□ -0.37
LIG3-209ENST00000586435 ADGRF2Q8IZF7 708 aa12.74□□□□□ -0.37
LIG3-209ENST00000586435 CPA6Q8N4T0 437 aa12.74□□□□□ -0.37
LIG3-209ENST00000586435 CSGALNACT2Q8N6G5 542 aa12.74□□□□□ -0.37
LIG3-209ENST00000586435 STKLD1Q8NE28 680 aa12.74□□□□□ -0.37
LIG3-209ENST00000586435 ZC3H10Q96K80 434 aaKnown RBP12.74□□□□□ -0.37
LIG3-209ENST00000586435 CEP295NLQ96MC4 621 aa12.74□□□□□ -0.37
LIG3-209ENST00000586435 CBWD1Q9BRT8 395 aa12.74□□□□□ -0.37
LIG3-209ENST00000586435 TBC1D7Q9P0N9 293 aa12.74□□□□□ -0.37
LIG3-209ENST00000586435 SIX4Q9UIU6 781 aa12.74□□□□□ -0.37
LIG3-209ENST00000586435 PCDHGA5Q9Y5G8 931 aa12.74□□□□□ -0.37
LIG3-209ENST00000586435 SNX9Q9Y5X1 595 aa12.74□□□□□ -0.37
LIG3-209ENST00000586435 TRAV19A0A0A6YYK7 116 aa12.73□□□□□ -0.37
LIG3-209ENST00000586435 GDF9O60383 454 aa12.73□□□□□ -0.37
LIG3-209ENST00000586435 EGFP01133 1207 aa12.73□□□□□ -0.37
LIG3-209ENST00000586435 USP17L7P0C7H9 530 aa12.73□□□□□ -0.37
LIG3-209ENST00000586435 TMEM191BP0C7N4 346 aa12.73□□□□□ -0.37
LIG3-209ENST00000586435 ZNF806P0C7X5 589 aa12.73□□□□□ -0.37
LIG3-209ENST00000586435 IDEP14735 1019 aa12.73□□□□□ -0.37
LIG3-209ENST00000586435 PFKLP17858 780 aa12.73□□□□□ -0.37
LIG3-209ENST00000586435 ACAT1P24752 427 aaKnown RBP12.73□□□□□ -0.37
LIG3-209ENST00000586435 GJA4P35212 333 aa12.73□□□□□ -0.37
LIG3-209ENST00000586435 STAT6P42226 847 aa12.73□□□□□ -0.37
LIG3-209ENST00000586435 MAGEA11P43364 429 aa12.73□□□□□ -0.37
LIG3-209ENST00000586435 SDHAF4Q5VUM1 108 aa12.73□□□□□ -0.37
LIG3-209ENST00000586435 FAM171BQ6P995 826 aa12.73□□□□□ -0.37
LIG3-209ENST00000586435 OSTM1Q86WC4 334 aa12.73□□□□□ -0.37
LIG3-209ENST00000586435 SPATA2LQ8IUW3 424 aaPredicted RBP12.73□□□□□ -0.37
LIG3-209ENST00000586435 SYCP3Q8IZU3 236 aa12.73□□□□□ -0.37
LIG3-209ENST00000586435 GPD1LQ8N335 351 aa12.73□□□□□ -0.37
LIG3-209ENST00000586435 FSIP1Q8NA03 581 aa12.73□□□□□ -0.37
LIG3-209ENST00000586435 OSCP1Q8WVF1 389 aa12.73□□□□□ -0.37
LIG3-209ENST00000586435 ATP2A3Q93084 1043 aa12.73□□□□□ -0.37
LIG3-209ENST00000586435 CLIC6Q96NY7 704 aa12.73□□□□□ -0.37
LIG3-209ENST00000586435 P2RY13Q9BPV8 354 aa12.73□□□□□ -0.37
LIG3-209ENST00000586435 FGFBP2Q9BYJ0 223 aa12.73□□□□□ -0.37
LIG3-209ENST00000586435 MTMR12Q9C0I1 747 aa12.73□□□□□ -0.37
LIG3-209ENST00000586435 ECT2Q9H8V3 914 aa12.73□□□□□ -0.37
LIG3-209ENST00000586435 PDE11AQ9HCR9 933 aa12.73□□□□□ -0.37
LIG3-209ENST00000586435 GCNT4Q9P109 453 aa12.73□□□□□ -0.37
LIG3-209ENST00000586435 GTF3C4Q9UKN8 822 aa12.73□□□□□ -0.37
LIG3-209ENST00000586435 CHD8Q9HCK8 2581 aa12.72□□□□□ -0.37
LIG3-209ENST00000586435 GOLGA8IPA6NC78 632 aa12.72□□□□□ -0.37
LIG3-209ENST00000586435 GOLGA8JA6NMD2 632 aa12.72□□□□□ -0.37
LIG3-209ENST00000586435 CKMP06732 381 aa12.72□□□□□ -0.37
LIG3-209ENST00000586435 KRT19P08727 400 aa12.72□□□□□ -0.37
LIG3-209ENST00000586435 CCDC192P0DO97 292 aa12.72□□□□□ -0.37
LIG3-209ENST00000586435 PDE6CP51160 858 aa12.72□□□□□ -0.37
LIG3-209ENST00000586435 GALK1P51570 392 aa12.72□□□□□ -0.37
LIG3-209ENST00000586435 MYO1EQ12965 1108 aa12.72□□□□□ -0.37
LIG3-209ENST00000586435 SURF1Q15526 300 aa12.72□□□□□ -0.37
LIG3-209ENST00000586435 SOWAHAQ2M3V2 549 aa12.72□□□□□ -0.37
LIG3-209ENST00000586435 AASDHQ4L235 1098 aaPredicted RBP12.72□□□□□ -0.37
LIG3-209ENST00000586435 PLA2G2CQ5R387 149 aa12.72□□□□□ -0.37
LIG3-209ENST00000586435 SCARA3Q6AZY7 606 aa12.72□□□□□ -0.37
LIG3-209ENST00000586435 VSTM1Q6UX27 236 aa12.72□□□□□ -0.37
LIG3-209ENST00000586435 C4orf50Q6ZRC1 276 aa12.72□□□□□ -0.37
LIG3-209ENST00000586435 SYT13Q7L8C5 426 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms