RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 CCDC50Q8IVM0 306 aa9.82□□□□□ -0.84
SS18-220ENST00000582092 HERC6Q8IVU3 1022 aa9.82□□□□□ -0.84
SS18-220ENST00000582092 RHOT1Q8IXI2 618 aa9.82□□□□□ -0.84
SS18-220ENST00000582092 RNF169Q8NCN4 708 aa9.82□□□□□ -0.84
SS18-220ENST00000582092 C1orf131Q8NDD1 294 aaKnown RBP9.82□□□□□ -0.84
SS18-220ENST00000582092 DBF4BQ8NFT6 615 aa9.82□□□□□ -0.84
SS18-220ENST00000582092 TMEM40Q8WWA1 233 aa9.82□□□□□ -0.84
SS18-220ENST00000582092 TNIP3Q96KP6 325 aa9.82□□□□□ -0.84
SS18-220ENST00000582092 GUCD1Q96NT3 240 aa9.82□□□□□ -0.84
SS18-220ENST00000582092 ZSWIM1Q9BR11 485 aa9.82□□□□□ -0.84
SS18-220ENST00000582092 LRRC1Q9BTT6 524 aa9.82□□□□□ -0.84
SS18-220ENST00000582092 NKX2-4Q9H2Z4 354 aa9.82□□□□□ -0.84
SS18-220ENST00000582092 TTYH1Q9H313 450 aaPredicted RBP9.82□□□□□ -0.84
SS18-220ENST00000582092 UBN1Q9NPG3 1134 aa9.82□□□□□ -0.84
SS18-220ENST00000582092 ST7Q9NRC1 585 aa9.82□□□□□ -0.84
SS18-220ENST00000582092 RBM12Q9NTZ6 932 aaKnown RBP9.82□□□□□ -0.84
SS18-220ENST00000582092 FAM105AQ9NUU6 356 aa9.82□□□□□ -0.84
SS18-220ENST00000582092 CHORDC1Q9UHD1 332 aaPredicted RBP9.82□□□□□ -0.84
SS18-220ENST00000582092 RAB21Q9UL25 225 aa9.82□□□□□ -0.84
SS18-220ENST00000582092 PCDHA3Q9Y5H8 950 aa9.82□□□□□ -0.84
SS18-220ENST00000582092 SQORQ9Y6N5 450 aa9.82□□□□□ -0.84
SS18-220ENST00000582092 A8MXQ7 604 aa9.81□□□□□ -0.84
SS18-220ENST00000582092 KPNA7A9QM74 516 aa9.81□□□□□ -0.84
SS18-220ENST00000582092 GOLGA8SH3BPF8 625 aa9.81□□□□□ -0.84
SS18-220ENST00000582092 MICAL2O94851 1124 aa9.81□□□□□ -0.84
SS18-220ENST00000582092 PROSCO94903 275 aa9.81□□□□□ -0.84
SS18-220ENST00000582092 THP07101 528 aa9.81□□□□□ -0.84
SS18-220ENST00000582092 MMP8P22894 467 aa9.81□□□□□ -0.84
SS18-220ENST00000582092 GJC1P36383 396 aa9.81□□□□□ -0.84
SS18-220ENST00000582092 PBX2P40425 430 aa9.81□□□□□ -0.84
SS18-220ENST00000582092 RABGGTBP53611 331 aa9.81□□□□□ -0.84
SS18-220ENST00000582092 PSMC1P62191 440 aaKnown RBP9.81□□□□□ -0.84
SS18-220ENST00000582092 MAMLD1Q13495 774 aa9.81□□□□□ -0.84
SS18-220ENST00000582092 ZNF268Q14587 947 aaPredicted RBP9.81□□□□□ -0.84
SS18-220ENST00000582092 SMC1AQ14683 1233 aaKnown RBP9.81□□□□□ -0.84
SS18-220ENST00000582092 HADHQ16836 314 aaKnown RBP9.81□□□□□ -0.84
SS18-220ENST00000582092 CC2D1AQ6P1N0 951 aaPredicted RBP9.81□□□□□ -0.84
SS18-220ENST00000582092 DENND1BQ6P3S1 775 aa9.81□□□□□ -0.84
SS18-220ENST00000582092 ALKAL1Q6UXT8 129 aa9.81□□□□□ -0.84
SS18-220ENST00000582092 RASGEF1CQ8N431 466 aa9.81□□□□□ -0.84
SS18-220ENST00000582092 SLC4A11Q8NBS3 891 aa9.81□□□□□ -0.84
SS18-220ENST00000582092 OLIG1Q8TAK6 271 aa9.81□□□□□ -0.84
SS18-220ENST00000582092 HNRNPLLQ8WVV9 542 aaKnown RBP9.81□□□□□ -0.84
SS18-220ENST00000582092 MYLIPQ8WY64 445 aa9.81□□□□□ -0.84
SS18-220ENST00000582092 WNT8BQ93098 351 aa9.81□□□□□ -0.84
SS18-220ENST00000582092 C18orf25Q96B23 403 aaPredicted RBP9.81□□□□□ -0.84
SS18-220ENST00000582092 BTBD6Q96KE9 485 aa9.81□□□□□ -0.84
SS18-220ENST00000582092 AP1M1Q9BXS5 423 aa9.81□□□□□ -0.84
SS18-220ENST00000582092 FTHL17Q9BXU8 183 aa9.81□□□□□ -0.84
SS18-220ENST00000582092 SLITRK6Q9H5Y7 841 aa9.81□□□□□ -0.84
SS18-220ENST00000582092 SMARCAL1Q9NZC9 954 aa9.81□□□□□ -0.84
SS18-220ENST00000582092 EHD2Q9NZN4 543 aa9.81□□□□□ -0.84
SS18-220ENST00000582092 STIM2Q9P246 746 aa9.81□□□□□ -0.84
SS18-220ENST00000582092 TUBGCP4Q9UGJ1 667 aa9.81□□□□□ -0.84
SS18-220ENST00000582092 TTC7AQ9ULT0 858 aaPredicted RBP9.81□□□□□ -0.84
SS18-220ENST00000582092 GIT1Q9Y2X7 761 aa9.81□□□□□ -0.84
SS18-220ENST00000582092 UTP11Q9Y3A2 253 aaKnown RBP9.81□□□□□ -0.84
SS18-220ENST00000582092 INSL6Q9Y581 213 aa9.81□□□□□ -0.84
SS18-220ENST00000582092 PTPRSQ13332 1948 aa9.81□□□□□ -0.84
SS18-220ENST00000582092 CITO14578 2027 aa9.8□□□□□ -0.84
SS18-220ENST00000582092 ARHGEF37A1IGU5 675 aa9.8□□□□□ -0.84
SS18-220ENST00000582092 DDX3YO15523 660 aaKnown RBP9.8□□□□□ -0.84
SS18-220ENST00000582092 PSTPIP1O43586 416 aa9.8□□□□□ -0.84
SS18-220ENST00000582092 RNF8O76064 485 aa9.8□□□□□ -0.84
SS18-220ENST00000582092 HEXIM1O94992 359 aaKnown RBP9.8□□□□□ -0.84
SS18-220ENST00000582092 ZRANB2O95218 330 aaKnown RBP eCLIP9.8□□□□□ -0.84
SS18-220ENST00000582092 CHRNA1P02708 482 aa9.8□□□□□ -0.84
SS18-220ENST00000582092 CFHP08603 1231 aa9.8□□□□□ -0.84
SS18-220ENST00000582092 GHRP10912 638 aa9.8□□□□□ -0.84
SS18-220ENST00000582092 KRT3P12035 628 aa9.8□□□□□ -0.84
SS18-220ENST00000582092 CDH5P33151 784 aaPredicted RBP9.8□□□□□ -0.84
SS18-220ENST00000582092 CTNNA1P35221 906 aaKnown RBP9.8□□□□□ -0.84
SS18-220ENST00000582092 VSNL1P62760 191 aa9.8□□□□□ -0.84
SS18-220ENST00000582092 SLC7A5Q01650 507 aa9.8□□□□□ -0.84
SS18-220ENST00000582092 ZNF211Q13398 564 aaPredicted RBP9.8□□□□□ -0.84
SS18-220ENST00000582092 ORC1Q13415 861 aa9.8□□□□□ -0.84
SS18-220ENST00000582092 GRIN2CQ14957 1233 aa9.8□□□□□ -0.84
SS18-220ENST00000582092 ZBTB6Q15916 424 aa9.8□□□□□ -0.84
SS18-220ENST00000582092 GOLGA7BQ2TAP0 167 aa9.8□□□□□ -0.84
SS18-220ENST00000582092 C2CD6Q53TS8 623 aa9.8□□□□□ -0.84
SS18-220ENST00000582092 HSP90B2PQ58FF3 399 aa9.8□□□□□ -0.84
SS18-220ENST00000582092 UBXN11Q5T124 520 aa9.8□□□□□ -0.84
SS18-220ENST00000582092 OR6B2Q6IFH4 312 aa9.8□□□□□ -0.84
SS18-220ENST00000582092 PLEKHA7Q6IQ23 1121 aa9.8□□□□□ -0.84
SS18-220ENST00000582092 TRAF7Q6Q0C0 670 aa9.8□□□□□ -0.84
SS18-220ENST00000582092 DSTYKQ6XUX3 929 aa9.8□□□□□ -0.84
SS18-220ENST00000582092 ADAT2Q7Z6V5 191 aaKnown RBP9.8□□□□□ -0.84
SS18-220ENST00000582092 ACOT1Q86TX2 421 aa9.8□□□□□ -0.84
SS18-220ENST00000582092 METTL23Q86XA0 190 aa9.8□□□□□ -0.84
SS18-220ENST00000582092 SMG8Q8ND04 991 aaKnown RBP9.8□□□□□ -0.84
SS18-220ENST00000582092 C3orf20Q8ND61 904 aa9.8□□□□□ -0.84
SS18-220ENST00000582092 MAFAQ8NHW3 353 aaPredicted RBP9.8□□□□□ -0.84
SS18-220ENST00000582092 UBA3Q8TBC4 463 aa9.8□□□□□ -0.84
SS18-220ENST00000582092 IFT81Q8WYA0 676 aa9.8□□□□□ -0.84
SS18-220ENST00000582092 TFAP2BQ92481 460 aa9.8□□□□□ -0.84
SS18-220ENST00000582092 MAGOHBQ96A72 148 aaKnown RBP9.8□□□□□ -0.84
SS18-220ENST00000582092 VWCEQ96DN2 955 aa9.8□□□□□ -0.84
SS18-220ENST00000582092 ZMAT2Q96NC0 199 aaKnown RBP9.8□□□□□ -0.84
SS18-220ENST00000582092 MCEEQ96PE7 176 aa9.8□□□□□ -0.84
SS18-220ENST00000582092 PNKPQ96T60 521 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms