RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 SDHAF4Q5VUM1 108 aa13.74□□□□□ -0.21
SS18-219ENST00000581570 CCDC33Q8N5R6 958 aa13.74□□□□□ -0.21
SS18-219ENST00000581570 SYT2Q8N9I0 419 aaPredicted RBP13.74□□□□□ -0.21
SS18-219ENST00000581570 RLN3Q8WXF3 142 aa13.74□□□□□ -0.21
SS18-219ENST00000581570 PI4K2AQ9BTU6 479 aa13.74□□□□□ -0.21
SS18-219ENST00000581570 MMTAG2Q9BU76 263 aaKnown RBP13.74□□□□□ -0.21
SS18-219ENST00000581570 MSTO1Q9BUK6 570 aa13.74□□□□□ -0.21
SS18-219ENST00000581570 LINC00597Q9H2U6 94 aa13.74□□□□□ -0.21
SS18-219ENST00000581570 TMEM206Q9H813 350 aa13.74□□□□□ -0.21
SS18-219ENST00000581570 TMLHEQ9NVH6 421 aa13.74□□□□□ -0.21
SS18-219ENST00000581570 LARSQ9P2J5 1176 aaKnown RBP13.74□□□□□ -0.21
SS18-219ENST00000581570 UXTQ9UBK9 157 aaPredicted RBP13.74□□□□□ -0.21
SS18-219ENST00000581570 CPSF3Q9UKF6 684 aaKnown RBP13.74□□□□□ -0.21
SS18-219ENST00000581570 CIZ1Q9ULV3 898 aaPredicted RBP13.74□□□□□ -0.21
SS18-219ENST00000581570 MMP17Q9ULZ9 603 aa13.74□□□□□ -0.21
SS18-219ENST00000581570 DERAQ9Y315 318 aa13.74□□□□□ -0.21
SS18-219ENST00000581570 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.73□□□□□ -0.21
SS18-219ENST00000581570 TRAV19A0A0A6YYK7 116 aa13.73□□□□□ -0.21
SS18-219ENST00000581570 HNRNPDLO14979 420 aaKnown RBP13.73□□□□□ -0.21
SS18-219ENST00000581570 TADA3O75528 432 aa13.73□□□□□ -0.21
SS18-219ENST00000581570 ALDH1A2O94788 518 aa13.73□□□□□ -0.21
SS18-219ENST00000581570 CKMP06732 381 aa13.73□□□□□ -0.21
SS18-219ENST00000581570 P2RY2P41231 377 aa13.73□□□□□ -0.21
SS18-219ENST00000581570 TSPY1Q01534 308 aa13.73□□□□□ -0.21
SS18-219ENST00000581570 USP4Q13107 963 aa13.73□□□□□ -0.21
SS18-219ENST00000581570 SEMA3BQ13214 749 aa13.73□□□□□ -0.21
SS18-219ENST00000581570 IL17AQ16552 155 aa13.73□□□□□ -0.21
SS18-219ENST00000581570 DDR2Q16832 855 aa13.73□□□□□ -0.21
SS18-219ENST00000581570 ARMCX6Q7L4S7 300 aa13.73□□□□□ -0.21
SS18-219ENST00000581570 PIP4P1Q86T03 277 aa13.73□□□□□ -0.21
SS18-219ENST00000581570 SYT12Q8IV01 421 aa13.73□□□□□ -0.21
SS18-219ENST00000581570 EFCAB13Q8IY85 973 aa13.73□□□□□ -0.21
SS18-219ENST00000581570 TMEFF1Q8IYR6 380 aa13.73□□□□□ -0.21
SS18-219ENST00000581570 OLIG1Q8TAK6 271 aa13.73□□□□□ -0.21
SS18-219ENST00000581570 SLC22A12Q96S37 553 aa13.73□□□□□ -0.21
SS18-219ENST00000581570 TMEM74BQ9NUR3 256 aa13.73□□□□□ -0.21
SS18-219ENST00000581570 ABCA7Q8IZY2 2146 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 A0A0B4J269 797 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 NPHP3-ACAD11A0A0J9YXS1 232 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 FAM221BA6H8Z2 402 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 ANTXRLA6NF34 631 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 UPK3BL1B0FP48 263 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 UPK3BL2E5RIL1 263 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 NFATC1O95644 943 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 PIGRP01833 764 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 OPRD1P41143 372 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 DPP6P42658 865 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 PTGER3P43115 390 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 ATXN3P54252 364 aaPredicted RBP13.72□□□□□ -0.21
SS18-219ENST00000581570 SLC12A3P55017 1021 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 RPL10AP62906 217 aaKnown RBP13.72□□□□□ -0.21
SS18-219ENST00000581570 MRPS21P82921 87 aaKnown RBP13.72□□□□□ -0.21
SS18-219ENST00000581570 ST3GAL1Q11201 340 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 NFE2Q16621 373 aaPredicted RBP13.72□□□□□ -0.21
SS18-219ENST00000581570 SLC23A3Q6PIS1 610 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 C19orf48Q6RUI8 117 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 TMEM92Q6UXU6 159 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 DTHD1Q6ZMT9 781 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 PROSER1Q86XN7 944 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 HDDC3Q8N4P3 179 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 CHCHD4Q8N4Q1 142 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 ARL14EPQ8N8R7 260 aaPredicted RBP13.72□□□□□ -0.21
SS18-219ENST00000581570 FBXO18Q8NFZ0 1043 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 SH3RF2Q8TEC5 729 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 KCNN1Q92952 543 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 SPACA7Q96KW9 195 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 FNBP1Q96RU3 617 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 CCSER1Q9C0I3 900 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 ASB7Q9H672 318 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 DPP3Q9NY33 737 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 KCND2Q9NZV8 630 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 PCDHB6Q9Y5E3 794 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 IGF2RP11717 2491 aa13.72□□□□□ -0.21
SS18-219ENST00000581570 ZFYVE26Q68DK2 2539 aa13.71□□□□□ -0.21
SS18-219ENST00000581570 KPNA7A9QM74 516 aa13.71□□□□□ -0.21
SS18-219ENST00000581570 NOL4O94818 638 aa13.71□□□□□ -0.21
SS18-219ENST00000581570 PLA2G4BP0C869 781 aa13.71□□□□□ -0.21
SS18-219ENST00000581570 HNRNPLP14866 589 aaKnown RBP eCLIP13.71□□□□□ -0.211e-9■■■■■ 30.1
SS18-219ENST00000581570 TOB1P50616 345 aaPredicted RBP13.71□□□□□ -0.21
SS18-219ENST00000581570 ZC2HC1CQ53FD0 456 aaPredicted RBP13.71□□□□□ -0.21
SS18-219ENST00000581570 SOWAHCQ53LP3 525 aaPredicted RBP13.71□□□□□ -0.21
SS18-219ENST00000581570 LMBRD2Q68DH5 695 aaPredicted RBP13.71□□□□□ -0.21
SS18-219ENST00000581570 FRMD1Q8N878 549 aa13.71□□□□□ -0.21
SS18-219ENST00000581570 WHAMMQ8TF30 809 aa13.71□□□□□ -0.21
SS18-219ENST00000581570 LRRC15Q8TF66 581 aa13.71□□□□□ -0.21
SS18-219ENST00000581570 TRMT2BQ96GJ1 504 aaKnown RBP13.71□□□□□ -0.21
SS18-219ENST00000581570 MYRFLQ96LU7 910 aa13.71□□□□□ -0.21
SS18-219ENST00000581570 PNMA5Q96PV4 448 aa13.71□□□□□ -0.21
SS18-219ENST00000581570 PLIN2Q99541 437 aa13.71□□□□□ -0.21
SS18-219ENST00000581570 GTPBP2Q9BX10 602 aaKnown RBP13.71□□□□□ -0.21
SS18-219ENST00000581570 POLMQ9NP87 494 aaPredicted RBP13.71□□□□□ -0.21
SS18-219ENST00000581570 GCNT4Q9P109 453 aa13.71□□□□□ -0.21
SS18-219ENST00000581570 MBD1Q9UIS9 605 aaPredicted RBP13.71□□□□□ -0.21
SS18-219ENST00000581570 C2CD2Q9Y426 696 aa13.71□□□□□ -0.21
SS18-219ENST00000581570 FASNP49327 2511 aaKnown RBP13.7□□□□□ -0.22
SS18-219ENST00000581570 LAD1O00515 517 aa13.7□□□□□ -0.22
SS18-219ENST00000581570 SEC24BO95487 1268 aa13.7□□□□□ -0.22
SS18-219ENST00000581570 CAPNS1P04632 268 aa13.7□□□□□ -0.22
SS18-219ENST00000581570 CFIP05156 583 aa13.7□□□□□ -0.22
SS18-219ENST00000581570 TCF3P15923 654 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms