RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 KIF5AQ12840 1032 aa10.87□□□□□ -0.67
SS18-207ENST00000577636 MTF1Q14872 753 aa10.87□□□□□ -0.67
SS18-207ENST00000577636 LPAL2Q16609 132 aa10.87□□□□□ -0.67
SS18-207ENST00000577636 KYAT1Q16773 422 aa10.87□□□□□ -0.67
SS18-207ENST00000577636 RTP2Q5QGT7 225 aa10.87□□□□□ -0.67
SS18-207ENST00000577636 ZBTB41Q5SVQ8 909 aa10.87□□□□□ -0.67
SS18-207ENST00000577636 FAM171A1Q5VUB5 890 aa10.87□□□□□ -0.67
SS18-207ENST00000577636 NYAP1Q6ZVC0 841 aa10.87□□□□□ -0.67
SS18-207ENST00000577636 MTSS1LQ765P7 747 aa10.87□□□□□ -0.67
SS18-207ENST00000577636 TAS1R3Q7RTX0 852 aa10.87□□□□□ -0.67
SS18-207ENST00000577636 ING5Q8WYH8 240 aa10.87□□□□□ -0.67
SS18-207ENST00000577636 CHP1Q99653 195 aa10.87□□□□□ -0.67
SS18-207ENST00000577636 PAAF1Q9BRP4 392 aa10.87□□□□□ -0.67
SS18-207ENST00000577636 NFKBIZQ9BYH8 718 aa10.87□□□□□ -0.67
SS18-207ENST00000577636 STK33Q9BYT3 514 aa10.87□□□□□ -0.67
SS18-207ENST00000577636 HAUS4Q9H6D7 363 aa10.87□□□□□ -0.67
SS18-207ENST00000577636 RBAKQ9NYW8 714 aaPredicted RBP10.87□□□□□ -0.67
SS18-207ENST00000577636 AIPL1Q9NZN9 384 aa10.87□□□□□ -0.67
SS18-207ENST00000577636 APEX2Q9UBZ4 518 aa10.87□□□□□ -0.67
SS18-207ENST00000577636 FBXO4Q9UKT5 387 aa10.87□□□□□ -0.67
SS18-207ENST00000577636 CDV3Q9UKY7 258 aaKnown RBP10.87□□□□□ -0.67
SS18-207ENST00000577636 R3HCC1Q9Y3T6 440 aaKnown RBP10.87□□□□□ -0.67
SS18-207ENST00000577636 ZFP37Q9Y6Q3 630 aaPredicted RBP10.87□□□□□ -0.67
SS18-207ENST00000577636 WDR81Q562E7 1941 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 DNAH14Q0VDD8 3507 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 A0A0B4J269 797 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 EPHB6O15197 1021 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 SPTLC1O15269 473 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 B4GALT5O43286 388 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 XYLBO75191 536 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 CLSTN1O94985 981 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 TNNI1P19237 187 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 SDHBP21912 280 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 CASQ1P31415 396 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 EIF4A3P38919 411 aaKnown RBP10.86□□□□□ -0.67
SS18-207ENST00000577636 KIF11P52732 1056 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 MFAP3P55082 362 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 PTENP60484 403 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 GNG11P61952 73 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 ETF1P62495 437 aaKnown RBP10.86□□□□□ -0.67
SS18-207ENST00000577636 PFKPQ01813 784 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 CREMQ03060 361 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 PRKCQQ04759 706 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 PSMD6Q15008 389 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 ZNF528Q3MIS6 628 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 CBWD6Q4V339 395 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 WDR44Q5JSH3 913 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 CBWD3Q5JTY5 395 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 CBWD5Q5RIA9 395 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 ATF7IP2Q5U623 682 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 SLC39A4Q6P5W5 647 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 WDR59Q6PJI9 974 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 TPRG1Q6ZUI0 275 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 REXO1L1PQ8IX06 675 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 GSTCDQ8NEC7 633 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 FBXL13Q8NEE6 735 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 PARD3BQ8TEW8 1205 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 MCRS1Q96EZ8 462 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 CLSTN3Q9BQT9 956 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 TTPALQ9BTX7 342 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.86□□□□□ -0.67
SS18-207ENST00000577636 CCDC113Q9H0I3 377 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 LTB4R2Q9NPC1 389 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 LZTFL1Q9NQ48 299 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 HCFC1R1Q9NWW0 138 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 ZSCAN32Q9NX65 697 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 MYO1AQ9UBC5 1043 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 FBXW11Q9UKB1 542 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 DNAJC12Q9UKB3 198 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 SMG5Q9UPR3 1016 aaKnown RBP10.86□□□□□ -0.67
SS18-207ENST00000577636 ARID2Q68CP9 1835 aa10.86□□□□□ -0.67
SS18-207ENST00000577636 SF3B1O75533 1304 aaKnown RBP eCLIP10.85□□□□□ -0.674e-6■■■■■ 96
SS18-207ENST00000577636 CACNA1IQ9P0X4 2223 aa10.85□□□□□ -0.67
SS18-207ENST00000577636 LRRIQ3A6PVS8 624 aaPredicted RBP10.85□□□□□ -0.67
SS18-207ENST00000577636 OGTO15294 1046 aa10.85□□□□□ -0.67
SS18-207ENST00000577636 NCAM2O15394 837 aa10.85□□□□□ -0.67
SS18-207ENST00000577636 ADAM12O43184 909 aa10.85□□□□□ -0.67
SS18-207ENST00000577636 PHACTR2O75167 634 aa10.85□□□□□ -0.67
SS18-207ENST00000577636 ADRB2P07550 413 aa10.85□□□□□ -0.67
SS18-207ENST00000577636 HARSP12081 509 aaKnown RBP10.85□□□□□ -0.67
SS18-207ENST00000577636 TARSP26639 723 aaKnown RBP10.85□□□□□ -0.67
SS18-207ENST00000577636 TERF1P54274 439 aa10.85□□□□□ -0.67
SS18-207ENST00000577636 MCCD1P59942 119 aaPredicted RBP10.85□□□□□ -0.67
SS18-207ENST00000577636 DLG4P78352 724 aa10.85□□□□□ -0.67
SS18-207ENST00000577636 ARID5AQ03989 594 aa10.85□□□□□ -0.67
SS18-207ENST00000577636 MBTD1Q05BQ5 628 aa10.85□□□□□ -0.67
SS18-207ENST00000577636 PPP3CAQ08209 521 aa10.85□□□□□ -0.67
SS18-207ENST00000577636 GRIK3Q13003 919 aa10.85□□□□□ -0.67
SS18-207ENST00000577636 BIRC3Q13489 604 aa10.85□□□□□ -0.67
SS18-207ENST00000577636 PCBP1Q15365 356 aaKnown RBP eCLIP10.85□□□□□ -0.67
SS18-207ENST00000577636 PSMD5Q16401 504 aa10.85□□□□□ -0.67
SS18-207ENST00000577636 ZNF568Q3ZCX4 644 aa10.85□□□□□ -0.67
SS18-207ENST00000577636 C10orf76Q5T2E6 689 aa10.85□□□□□ -0.67
SS18-207ENST00000577636 MPZL3Q6UWV2 235 aa10.85□□□□□ -0.67
SS18-207ENST00000577636 GPR161Q8N6U8 529 aaKnown RBP10.85□□□□□ -0.67
SS18-207ENST00000577636 ACRBPQ8NEB7 543 aa10.85□□□□□ -0.67
SS18-207ENST00000577636 LNX1Q8TBB1 728 aaPredicted RBP10.85□□□□□ -0.67
SS18-207ENST00000577636 SLC7A14Q8TBB6 771 aa10.85□□□□□ -0.67
SS18-207ENST00000577636 JAKMIP2Q96AA8 810 aa10.85□□□□□ -0.67
SS18-207ENST00000577636 NT5C1BQ96P26 610 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms