RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 MARCH6O60337 910 aa6.53□□□□□ -1.36
NUP88-213ENST00000576862 ELFN1P0C7U0 828 aa6.53□□□□□ -1.36
NUP88-213ENST00000576862 CYP2C9P11712 490 aa6.53□□□□□ -1.36
NUP88-213ENST00000576862 CLK3P49761 638 aaKnown RBP6.53□□□□□ -1.36
NUP88-213ENST00000576862 RAB32Q13637 225 aa6.53□□□□□ -1.36
NUP88-213ENST00000576862 NBPF8Q3BBV2 869 aa6.53□□□□□ -1.36
NUP88-213ENST00000576862 C3orf38Q5JPI3 329 aa6.53□□□□□ -1.36
NUP88-213ENST00000576862 DCAF12L1Q5VU92 463 aa6.53□□□□□ -1.36
NUP88-213ENST00000576862 KAZNQ674X7 775 aa6.53□□□□□ -1.36
NUP88-213ENST00000576862 PPP4R4Q6NUP7 873 aa6.53□□□□□ -1.36
NUP88-213ENST00000576862 SESTD1Q86VW0 696 aa6.53□□□□□ -1.36
NUP88-213ENST00000576862 GAS2L3Q86XJ1 694 aa6.53□□□□□ -1.36
NUP88-213ENST00000576862 OR56A3Q8NH54 315 aa6.53□□□□□ -1.36
NUP88-213ENST00000576862 RFKQ969G6 155 aa6.53□□□□□ -1.36
NUP88-213ENST00000576862 TRIM43Q96BQ3 446 aaPredicted RBP6.53□□□□□ -1.36
NUP88-213ENST00000576862 NMD3Q96D46 503 aaKnown RBP6.53□□□□□ -1.36
NUP88-213ENST00000576862 ZNF518BQ9C0D4 1074 aa6.53□□□□□ -1.36
NUP88-213ENST00000576862 MS4A7Q9GZW8 240 aaPredicted RBP6.53□□□□□ -1.36
NUP88-213ENST00000576862 KLC4Q9NSK0 619 aa6.53□□□□□ -1.36
NUP88-213ENST00000576862 SACM1LQ9NTJ5 587 aa6.53□□□□□ -1.36
NUP88-213ENST00000576862 COL20A1Q9P218 1284 aa6.53□□□□□ -1.36
NUP88-213ENST00000576862 NDRG4Q9ULP0 352 aaKnown RBP6.53□□□□□ -1.36
NUP88-213ENST00000576862 MRPS17Q9Y2R5 130 aaKnown RBP6.53□□□□□ -1.36
NUP88-213ENST00000576862 KIF3BO15066 747 aa6.52□□□□□ -1.37
NUP88-213ENST00000576862 MGEA5O60502 916 aa6.52□□□□□ -1.37
NUP88-213ENST00000576862 PPIFP30405 207 aaKnown RBP6.52□□□□□ -1.37
NUP88-213ENST00000576862 CXCR5P32302 372 aa6.52□□□□□ -1.37
NUP88-213ENST00000576862 RARRES1P49788 294 aa6.52□□□□□ -1.37
NUP88-213ENST00000576862 ARHGAP40Q5TG30 622 aa6.52□□□□□ -1.37
NUP88-213ENST00000576862 ICE2Q659A1 982 aa6.52□□□□□ -1.37
NUP88-213ENST00000576862 SFRP4Q6FHJ7 346 aaPredicted RBP6.52□□□□□ -1.37
NUP88-213ENST00000576862 PEG10Q86TG7 708 aaKnown RBP6.52□□□□□ -1.37
NUP88-213ENST00000576862 MPP5Q8N3R9 675 aa6.52□□□□□ -1.37
NUP88-213ENST00000576862 SIMC1Q8NDZ2 872 aa6.52□□□□□ -1.37
NUP88-213ENST00000576862 RAPGEF4Q8WZA2 1011 aa6.52□□□□□ -1.37
NUP88-213ENST00000576862 APOL5Q9BWW9 433 aa6.52□□□□□ -1.37
NUP88-213ENST00000576862 PRDM13Q9H4Q3 707 aa6.52□□□□□ -1.37
NUP88-213ENST00000576862 DKK3Q9UBP4 350 aa6.52□□□□□ -1.37
NUP88-213ENST00000576862 AFF4Q9UHB7 1163 aaKnown RBP6.52□□□□□ -1.37
NUP88-213ENST00000576862 SERTAD3Q9UJW9 196 aa6.52□□□□□ -1.37
NUP88-213ENST00000576862 SHOC2Q9UQ13 582 aa6.52□□□□□ -1.37
NUP88-213ENST00000576862 TBC1D30Q9Y2I9 924 aa6.52□□□□□ -1.37
NUP88-213ENST00000576862 KIAA0355O15063 1070 aa6.51□□□□□ -1.37
NUP88-213ENST00000576862 ERBB2P04626 1255 aa6.51□□□□□ -1.37
NUP88-213ENST00000576862 CSF1RP07333 972 aa6.51□□□□□ -1.37
NUP88-213ENST00000576862 MYO1EQ12965 1108 aa6.51□□□□□ -1.37
NUP88-213ENST00000576862 ZNF362Q5T0B9 420 aaPredicted RBP6.51□□□□□ -1.37
NUP88-213ENST00000576862 RGS7BPQ6MZT1 257 aaPredicted RBP6.51□□□□□ -1.37
NUP88-213ENST00000576862 ZDHHC24Q6UX98 284 aa6.51□□□□□ -1.37
NUP88-213ENST00000576862 TTC17Q96AE7 1141 aa6.51□□□□□ -1.37
NUP88-213ENST00000576862 FKBP10Q96AY3 582 aa6.51□□□□□ -1.37
NUP88-213ENST00000576862 SLITRK6Q9H5Y7 841 aa6.51□□□□□ -1.37
NUP88-213ENST00000576862 CXorf36Q9H7Y0 433 aa6.51□□□□□ -1.37
NUP88-213ENST00000576862 KIAA1586Q9HCI6 787 aa6.51□□□□□ -1.37
NUP88-213ENST00000576862 A1CFQ9NQ94 594 aaKnown RBP6.51□□□□□ -1.37
NUP88-213ENST00000576862 PYCARD-AS1I3L0S3 204 aa6.5□□□□□ -1.37
NUP88-213ENST00000576862 MAP4K4O95819 1239 aaPredicted RBP6.5□□□□□ -1.37
NUP88-213ENST00000576862 XRCC6P12956 609 aaKnown RBP eCLIP6.5□□□□□ -1.37
NUP88-213ENST00000576862 PCSK6P29122 969 aa6.5□□□□□ -1.37
NUP88-213ENST00000576862 LRPAP1P30533 357 aa6.5□□□□□ -1.37
NUP88-213ENST00000576862 GNALP38405 381 aa6.5□□□□□ -1.37
NUP88-213ENST00000576862 GRIA3P42263 894 aa6.5□□□□□ -1.37
NUP88-213ENST00000576862 DGKEP52429 567 aa6.5□□□□□ -1.37
NUP88-213ENST00000576862 RPS16P62249 146 aaKnown RBP6.5□□□□□ -1.37
NUP88-213ENST00000576862 TBCCQ15814 346 aa6.5□□□□□ -1.37
NUP88-213ENST00000576862 PLA1AQ53H76 456 aa6.5□□□□□ -1.37
NUP88-213ENST00000576862 MAVSQ7Z434 540 aa6.5□□□□□ -1.37
NUP88-213ENST00000576862 DTX2Q86UW9 622 aa6.5□□□□□ -1.37
NUP88-213ENST00000576862 KRT78Q8N1N4 520 aa6.5□□□□□ -1.37
NUP88-213ENST00000576862 PBKQ96KB5 322 aa6.5□□□□□ -1.37
NUP88-213ENST00000576862 ALG8Q9BVK2 526 aa6.5□□□□□ -1.37
NUP88-213ENST00000576862 SARGQ9BW04 601 aa6.5□□□□□ -1.37
NUP88-213ENST00000576862 ZNF287Q9HBT7 754 aa6.5□□□□□ -1.37
NUP88-213ENST00000576862 OGDHLQ9ULD0 1010 aa6.5□□□□□ -1.37
NUP88-213ENST00000576862 MBD3L4A6NDZ8 208 aaPredicted RBP6.49□□□□□ -1.37
NUP88-213ENST00000576862 MBD3L3A6NE82 208 aaPredicted RBP6.49□□□□□ -1.37
NUP88-213ENST00000576862 ZKSCAN1P17029 563 aaPredicted RBP6.49□□□□□ -1.37
NUP88-213ENST00000576862 KCNA3P22001 575 aa6.49□□□□□ -1.37
NUP88-213ENST00000576862 BMP5P22003 454 aa6.49□□□□□ -1.37
NUP88-213ENST00000576862 EIF2B5Q13144 721 aaKnown RBP6.49□□□□□ -1.37
NUP88-213ENST00000576862 E2F2Q14209 437 aa6.49□□□□□ -1.37
NUP88-213ENST00000576862 SLC44A4Q53GD3 710 aa6.49□□□□□ -1.37
NUP88-213ENST00000576862 ATG4AQ8WYN0 398 aa6.49□□□□□ -1.37
NUP88-213ENST00000576862 MSLNLQ96KJ4 702 aa6.49□□□□□ -1.37
NUP88-213ENST00000576862 BTBD1Q9H0C5 482 aa6.49□□□□□ -1.37
NUP88-213ENST00000576862 GEMIN8Q9NWZ8 242 aaKnown RBP6.49□□□□□ -1.37
NUP88-213ENST00000576862 PAXBP1Q9Y5B6 917 aa6.49□□□□□ -1.37
NUP88-213ENST00000576862 CCDC151A5D8V7 595 aa6.48□□□□□ -1.37
NUP88-213ENST00000576862 LINC00473A8K010 186 aa6.48□□□□□ -1.37
NUP88-213ENST00000576862 F8W8V4 182 aa6.48□□□□□ -1.37
NUP88-213ENST00000576862 SLC5A1P13866 664 aa6.48□□□□□ -1.37
NUP88-213ENST00000576862 IL1R1P14778 569 aa6.48□□□□□ -1.37
NUP88-213ENST00000576862 PTH2RP49190 550 aa6.48□□□□□ -1.37
NUP88-213ENST00000576862 KRT17Q04695 432 aa6.48□□□□□ -1.37
NUP88-213ENST00000576862 ERCC6LQ2NKX8 1250 aa6.48□□□□□ -1.37
NUP88-213ENST00000576862 MGAT5BQ3V5L5 792 aa6.48□□□□□ -1.37
NUP88-213ENST00000576862 HSP90AB2PQ58FF8 381 aa6.48□□□□□ -1.37
NUP88-213ENST00000576862 CAGE1Q8TC20 777 aa6.48□□□□□ -1.37
NUP88-213ENST00000576862 PHKBQ93100 1093 aa6.48□□□□□ -1.37
NUP88-213ENST00000576862 SPSB4Q96A44 273 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms