RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 NUCKS1Q9H1E3 243 aaKnown RBP18.15■□□□□ 0.5
NUP88-210ENST00000574867 FAM49BQ9NUQ9 324 aa18.15■□□□□ 0.5
NUP88-210ENST00000574867 GYPCP04921 128 aa18.14■□□□□ 0.5
NUP88-210ENST00000574867 TPM1P09493 284 aa18.14■□□□□ 0.5
NUP88-210ENST00000574867 PNMA6AP0CW24 399 aaPredicted RBP18.14■□□□□ 0.5
NUP88-210ENST00000574867 EPCAMP16422 314 aa18.14■□□□□ 0.5
NUP88-210ENST00000574867 MAGEA11P43364 429 aa18.14■□□□□ 0.5
NUP88-210ENST00000574867 MICALL1Q8N3F8 863 aa18.14■□□□□ 0.5
NUP88-210ENST00000574867 C12orf29Q8N999 325 aa18.14■□□□□ 0.5
NUP88-210ENST00000574867 ATAD1Q8NBU5 361 aa18.14■□□□□ 0.5
NUP88-210ENST00000574867 CYFIP2Q96F07 1278 aa18.14■□□□□ 0.5
NUP88-210ENST00000574867 HNRNPABQ99729 332 aaKnown RBP18.14■□□□□ 0.5
NUP88-210ENST00000574867 IGFLR1Q9H665 355 aa18.14■□□□□ 0.5
NUP88-210ENST00000574867 MAN1C1Q9NR34 630 aa18.14■□□□□ 0.5
NUP88-210ENST00000574867 DZANK1Q9NVP4 752 aa18.14■□□□□ 0.5
NUP88-210ENST00000574867 CAPN11Q9UMQ6 739 aa18.14■□□□□ 0.5
NUP88-210ENST00000574867 PRRG1O14668 218 aa18.14■□□□□ 0.49
NUP88-210ENST00000574867 CYP26A1O43174 497 aa18.14■□□□□ 0.49
NUP88-210ENST00000574867 VNN2O95498 520 aa18.14■□□□□ 0.49
NUP88-210ENST00000574867 CCDC172P0C7W6 258 aa18.14■□□□□ 0.49
NUP88-210ENST00000574867 CCDC130P13994 396 aa18.14■□□□□ 0.49
NUP88-210ENST00000574867 GNA15P30679 374 aa18.14■□□□□ 0.49
NUP88-210ENST00000574867 VSTM1Q6UX27 236 aa18.14■□□□□ 0.49
NUP88-210ENST00000574867 TMEM184AQ6ZMB5 413 aa18.14■□□□□ 0.49
NUP88-210ENST00000574867 FAM35AQ86V20 835 aa18.14■□□□□ 0.49
NUP88-210ENST00000574867 FUKQ8N0W3 1084 aa18.14■□□□□ 0.49
NUP88-210ENST00000574867 SLC2A14Q8TDB8 520 aa18.14■□□□□ 0.49
NUP88-210ENST00000574867 SMARCD1Q96GM5 515 aa18.14■□□□□ 0.49
NUP88-210ENST00000574867 MED10Q9BTT4 135 aa18.14■□□□□ 0.49
NUP88-210ENST00000574867 B3GNT5Q9BYG0 378 aa18.14■□□□□ 0.49
NUP88-210ENST00000574867 CYP4F11Q9HBI6 524 aa18.14■□□□□ 0.49
NUP88-210ENST00000574867 MED7O43513 233 aa18.13■□□□□ 0.49
NUP88-210ENST00000574867 ADCY5O95622 1261 aa18.13■□□□□ 0.49
NUP88-210ENST00000574867 CDC25BP30305 580 aa18.13■□□□□ 0.49
NUP88-210ENST00000574867 GTF2F1P35269 517 aaKnown RBP eCLIP18.13■□□□□ 0.49
NUP88-210ENST00000574867 CLCN1P35523 988 aa18.13■□□□□ 0.49
NUP88-210ENST00000574867 TUFMP49411 452 aaKnown RBP18.13■□□□□ 0.49
NUP88-210ENST00000574867 ZBED6P86452 979 aa18.13■□□□□ 0.49
NUP88-210ENST00000574867 COL19A1Q14993 1142 aa18.13■□□□□ 0.49
NUP88-210ENST00000574867 LLGL2Q6P1M3 1020 aa18.13■□□□□ 0.49
NUP88-210ENST00000574867 TMC6Q7Z403 805 aa18.13■□□□□ 0.49
NUP88-210ENST00000574867 LPIN3Q9BQK8 851 aa18.13■□□□□ 0.49
NUP88-210ENST00000574867 LUC7L2Q9Y383 392 aaKnown RBP18.13■□□□□ 0.49
NUP88-210ENST00000574867 SZT2Q5T011 3432 aa18.13■□□□□ 0.49
NUP88-210ENST00000574867 LRRC53A6NM62 1247 aa18.13■□□□□ 0.49
NUP88-210ENST00000574867 GFPT2O94808 682 aa18.13■□□□□ 0.49
NUP88-210ENST00000574867 C8AP07357 584 aa18.13■□□□□ 0.49
NUP88-210ENST00000574867 MRE11P49959 708 aa18.13■□□□□ 0.49
NUP88-210ENST00000574867 PDE6CP51160 858 aa18.13■□□□□ 0.49
NUP88-210ENST00000574867 DUSP4Q13115 394 aa18.13■□□□□ 0.49
NUP88-210ENST00000574867 PLD1Q13393 1074 aa18.13■□□□□ 0.49
NUP88-210ENST00000574867 MEA1Q16626 185 aa18.13■□□□□ 0.49
NUP88-210ENST00000574867 PPP1R26Q5T8A7 1209 aaPredicted RBP18.13■□□□□ 0.49
NUP88-210ENST00000574867 SLC7A14Q8TBB6 771 aa18.13■□□□□ 0.49
NUP88-210ENST00000574867 ZNF518BQ9C0D4 1074 aa18.13■□□□□ 0.49
NUP88-210ENST00000574867 KRT82Q9NSB4 513 aa18.13■□□□□ 0.49
NUP88-210ENST00000574867 INSL5Q9Y5Q6 135 aa18.13■□□□□ 0.49
NUP88-210ENST00000574867 O00370 1275 aa18.12■□□□□ 0.49
NUP88-210ENST00000574867 SEC24AO95486 1093 aa18.12■□□□□ 0.49
NUP88-210ENST00000574867 SPATA31D3P0C874 917 aa18.12■□□□□ 0.49
NUP88-210ENST00000574867 HAPLN1P10915 354 aaPredicted RBP18.12■□□□□ 0.49
NUP88-210ENST00000574867 FERP16591 822 aa18.12■□□□□ 0.49
NUP88-210ENST00000574867 BRD2P25440 801 aaKnown RBP18.12■□□□□ 0.49
NUP88-210ENST00000574867 HOXA9P31269 272 aa18.12■□□□□ 0.49
NUP88-210ENST00000574867 GSE1Q14687 1217 aa18.12■□□□□ 0.49
NUP88-210ENST00000574867 MGAT5BQ3V5L5 792 aa18.12■□□□□ 0.49
NUP88-210ENST00000574867 SPATA31D4Q6ZUB0 917 aa18.12■□□□□ 0.49
NUP88-210ENST00000574867 PAQR9Q6ZVX9 377 aa18.12■□□□□ 0.49
NUP88-210ENST00000574867 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.12■□□□□ 0.49
NUP88-210ENST00000574867 VN1R2Q8NFZ6 395 aa18.12■□□□□ 0.49
NUP88-210ENST00000574867 TFAP2BQ92481 460 aa18.12■□□□□ 0.49
NUP88-210ENST00000574867 SEPT5Q99719 369 aaPredicted RBP18.12■□□□□ 0.49
NUP88-210ENST00000574867 CRISPLD1Q9H336 500 aa18.12■□□□□ 0.49
NUP88-210ENST00000574867 ZDHHC7Q9NXF8 308 aa18.12■□□□□ 0.49
NUP88-210ENST00000574867 HESX1Q9UBX0 185 aa18.12■□□□□ 0.49
NUP88-210ENST00000574867 WDR3Q9UNX4 943 aaKnown RBP eCLIP18.12■□□□□ 0.49
NUP88-210ENST00000574867 YIPF1Q9Y548 306 aa18.12■□□□□ 0.49
NUP88-210ENST00000574867 SPDYE4A6NLX3 237 aa18.11■□□□□ 0.49
NUP88-210ENST00000574867 TRIM66O15016 1216 aa18.11■□□□□ 0.49
NUP88-210ENST00000574867 THAP12O43422 761 aa18.11■□□□□ 0.49
NUP88-210ENST00000574867 GLP2RO95838 553 aa18.11■□□□□ 0.49
NUP88-210ENST00000574867 FAM200BP0CF97 657 aa18.11■□□□□ 0.49
NUP88-210ENST00000574867 BDNFP23560 247 aa18.11■□□□□ 0.49
NUP88-210ENST00000574867 ADORA2BP29275 332 aa18.11■□□□□ 0.49
NUP88-210ENST00000574867 CASP14P31944 242 aa18.11■□□□□ 0.49
NUP88-210ENST00000574867 RPL10AP62906 217 aaKnown RBP18.11■□□□□ 0.49
NUP88-210ENST00000574867 ADAM15Q13444 863 aa18.11■□□□□ 0.49
NUP88-210ENST00000574867 CNGA2Q16280 664 aa18.11■□□□□ 0.49
NUP88-210ENST00000574867 CTC1Q2NKJ3 1217 aa18.11■□□□□ 0.49
NUP88-210ENST00000574867 SFMBT2Q5VUG0 894 aa18.11■□□□□ 0.49
NUP88-210ENST00000574867 LCLAT1Q6UWP7 414 aa18.11■□□□□ 0.49
NUP88-210ENST00000574867 SLC47A2Q86VL8 602 aa18.11■□□□□ 0.49
NUP88-210ENST00000574867 TTC9BQ8N6N2 239 aa18.11■□□□□ 0.49
NUP88-210ENST00000574867 SYN2Q92777 582 aaPredicted RBP18.11■□□□□ 0.49
NUP88-210ENST00000574867 PABPC5Q96DU9 382 aaKnown RBP18.11■□□□□ 0.49
NUP88-210ENST00000574867 CEP295NLQ96MC4 621 aa18.11■□□□□ 0.49
NUP88-210ENST00000574867 SFXN1Q9H9B4 322 aa18.11■□□□□ 0.49
NUP88-210ENST00000574867 TSPAN16Q9UKR8 245 aa18.11■□□□□ 0.49
NUP88-210ENST00000574867 CLDN5O00501 218 aa18.11■□□□□ 0.49
NUP88-210ENST00000574867 ZMYND10O75800 440 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms