RNA–Protein interactions for RNA: ENST00000571409.1

CTDNEP1-206, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 5

Gene CTDNEP1, Length 741 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-206ENST00000571409 CRTAC1Q9NQ79 661 aa32.46■■■□□ 2.79
CTDNEP1-206ENST00000571409 MRPS17Q9Y2R5 130 aaKnown RBP32.46■■■□□ 2.79
CTDNEP1-206ENST00000571409 KIF20AO95235 890 aa32.45■■■□□ 2.79
CTDNEP1-206ENST00000571409 PRAMEF12O95522 483 aa32.45■■■□□ 2.79
CTDNEP1-206ENST00000571409 WEE1P30291 646 aa32.45■■■□□ 2.79
CTDNEP1-206ENST00000571409 BIRC3Q13489 604 aa32.45■■■□□ 2.79
CTDNEP1-206ENST00000571409 FRMD5Q7Z6J6 570 aa32.45■■■□□ 2.79
CTDNEP1-206ENST00000571409 SCN4BQ8IWT1 228 aa32.45■■■□□ 2.79
CTDNEP1-206ENST00000571409 SLC46A2Q9BY10 475 aa32.45■■■□□ 2.79
CTDNEP1-206ENST00000571409 SNX25Q9H3E2 840 aa32.45■■■□□ 2.79
CTDNEP1-206ENST00000571409 OBP2AQ9NY56 170 aa32.45■■■□□ 2.79
CTDNEP1-206ENST00000571409 DENND4CQ5VZ89 1909 aa32.45■■■□□ 2.78
CTDNEP1-206ENST00000571409 OBSL1O75147 1896 aa32.44■■■□□ 2.78
CTDNEP1-206ENST00000571409 ARNTLO00327 626 aa32.44■■■□□ 2.78
CTDNEP1-206ENST00000571409 CHADO15335 359 aa32.44■■■□□ 2.78
CTDNEP1-206ENST00000571409 TACC1O75410 805 aa32.44■■■□□ 2.78
CTDNEP1-206ENST00000571409 STAU1O95793 577 aaKnown RBP32.44■■■□□ 2.78
CTDNEP1-206ENST00000571409 ATICP31939 592 aa32.44■■■□□ 2.78
CTDNEP1-206ENST00000571409 MAPRE1Q15691 268 aaKnown RBP32.44■■■□□ 2.78
CTDNEP1-206ENST00000571409 TDRD10Q5VZ19 366 aaKnown RBP32.44■■■□□ 2.78
CTDNEP1-206ENST00000571409 MYLPFQ96A32 169 aa32.44■■■□□ 2.78
CTDNEP1-206ENST00000571409 SYAP1Q96A49 352 aaPredicted RBP32.44■■■□□ 2.78
CTDNEP1-206ENST00000571409 LRRC3BQ96PB8 259 aa32.44■■■□□ 2.78
CTDNEP1-206ENST00000571409 MAGEC2Q9UBF1 373 aaPredicted RBP32.44■■■□□ 2.78
CTDNEP1-206ENST00000571409 PIAS3Q9Y6X2 628 aa32.44■■■□□ 2.78
CTDNEP1-206ENST00000571409 SLC38A8A6NNN8 435 aa32.43■■■□□ 2.78
CTDNEP1-206ENST00000571409 MAN2B1O00754 1011 aa32.43■■■□□ 2.78
CTDNEP1-206ENST00000571409 CALUO43852 315 aaPredicted RBP32.43■■■□□ 2.78
CTDNEP1-206ENST00000571409 GFRA3O60609 400 aa32.43■■■□□ 2.78
CTDNEP1-206ENST00000571409 GNL1P36915 607 aaPredicted RBP32.43■■■□□ 2.78
CTDNEP1-206ENST00000571409 AP3M2P53677 418 aa32.43■■■□□ 2.78
CTDNEP1-206ENST00000571409 CLDN10P78369 228 aa32.43■■■□□ 2.78
CTDNEP1-206ENST00000571409 OR6B3Q8NGW1 331 aa32.43■■■□□ 2.78
CTDNEP1-206ENST00000571409 CSGALNACT1Q8TDX6 532 aa32.43■■■□□ 2.78
CTDNEP1-206ENST00000571409 SMG9Q9H0W8 520 aaKnown RBP32.43■■■□□ 2.78
CTDNEP1-206ENST00000571409 XYLT2Q9H1B5 865 aa32.43■■■□□ 2.78
CTDNEP1-206ENST00000571409 UXTQ9UBK9 157 aaPredicted RBP32.43■■■□□ 2.78
CTDNEP1-206ENST00000571409 NXF1Q9UBU9 619 aaKnown RBP32.43■■■□□ 2.78
CTDNEP1-206ENST00000571409 ZMYM5Q9UJ78 669 aa32.43■■■□□ 2.78
CTDNEP1-206ENST00000571409 NME7Q9Y5B8 376 aa32.43■■■□□ 2.78
CTDNEP1-206ENST00000571409 NCAM2O15394 837 aa32.42■■■□□ 2.78
CTDNEP1-206ENST00000571409 NOL4O94818 638 aa32.42■■■□□ 2.78
CTDNEP1-206ENST00000571409 FAM163BP0C2L3 166 aa32.42■■■□□ 2.78
CTDNEP1-206ENST00000571409 MAGEA11P43364 429 aa32.42■■■□□ 2.78
CTDNEP1-206ENST00000571409 CEP135Q66GS9 1140 aa32.42■■■□□ 2.78
CTDNEP1-206ENST00000571409 CMTM8Q8IZV2 173 aa32.42■■■□□ 2.78
CTDNEP1-206ENST00000571409 MAB21L3Q8N8X9 362 aa32.42■■■□□ 2.78
CTDNEP1-206ENST00000571409 TRMT2BQ96GJ1 504 aaKnown RBP32.42■■■□□ 2.78
CTDNEP1-206ENST00000571409 NDRG2Q9UN36 371 aaKnown RBP32.42■■■□□ 2.78
CTDNEP1-206ENST00000571409 MAPK8IP1Q9UQF2 711 aa32.42■■■□□ 2.78
CTDNEP1-206ENST00000571409 TRAF3IP3Q9Y228 551 aa32.42■■■□□ 2.78
CTDNEP1-206ENST00000571409 PATJQ8NI35 1801 aa32.42■■■□□ 2.78
CTDNEP1-206ENST00000571409 CLSTN1O94985 981 aa32.41■■■□□ 2.78
CTDNEP1-206ENST00000571409 C4BPAP04003 597 aaKnown RBP32.41■■■□□ 2.78
CTDNEP1-206ENST00000571409 DDX6P26196 483 aaKnown RBP eCLIP32.41■■■□□ 2.78
CTDNEP1-206ENST00000571409 MAGEA9P43362 315 aa32.41■■■□□ 2.78
CTDNEP1-206ENST00000571409 DLG4P78352 724 aa32.41■■■□□ 2.78
CTDNEP1-206ENST00000571409 NUCB2P80303 420 aa32.41■■■□□ 2.78
CTDNEP1-206ENST00000571409 CYP27A1Q02318 531 aa32.41■■■□□ 2.78
CTDNEP1-206ENST00000571409 KCNB1Q14721 858 aa32.41■■■□□ 2.78
CTDNEP1-206ENST00000571409 ARHGAP29Q52LW3 1261 aa32.41■■■□□ 2.78
CTDNEP1-206ENST00000571409 BPIFB1Q8TDL5 484 aa32.41■■■□□ 2.78
CTDNEP1-206ENST00000571409 MRPS31Q92665 395 aaKnown RBP32.41■■■□□ 2.78
CTDNEP1-206ENST00000571409 CLDN23Q96B33 292 aa32.41■■■□□ 2.78
CTDNEP1-206ENST00000571409 SPATA6Q9NWH7 488 aaPredicted RBP32.41■■■□□ 2.78
CTDNEP1-206ENST00000571409 FRMD4BQ9Y2L6 1034 aa32.41■■■□□ 2.78
CTDNEP1-206ENST00000571409 BDNFP23560 247 aa32.4■■■□□ 2.78
CTDNEP1-206ENST00000571409 AVPR1AP37288 418 aa32.4■■■□□ 2.78
CTDNEP1-206ENST00000571409 ZNF699Q32M78 642 aa32.4■■■□□ 2.78
CTDNEP1-206ENST00000571409 MDH1BQ5I0G3 518 aa32.4■■■□□ 2.78
CTDNEP1-206ENST00000571409 TXNDC8Q6A555 127 aa32.4■■■□□ 2.78
CTDNEP1-206ENST00000571409 VSTM1Q6UX27 236 aa32.4■■■□□ 2.78
CTDNEP1-206ENST00000571409 CELF5Q8N6W0 485 aaKnown RBP32.4■■■□□ 2.78
CTDNEP1-206ENST00000571409 MYCBPAPQ8TBZ2 947 aa32.4■■■□□ 2.78
CTDNEP1-206ENST00000571409 FAM3CQ92520 227 aa32.4■■■□□ 2.78
CTDNEP1-206ENST00000571409 PCED1BQ96HM7 432 aa32.4■■■□□ 2.78
CTDNEP1-206ENST00000571409 ZFYVE19Q96K21 471 aa32.4■■■□□ 2.78
CTDNEP1-206ENST00000571409 MYRFLQ96LU7 910 aa32.4■■■□□ 2.78
CTDNEP1-206ENST00000571409 VRTNQ9H8Y1 702 aa32.4■■■□□ 2.78
CTDNEP1-206ENST00000571409 TADA3O75528 432 aa32.39■■■□□ 2.78
CTDNEP1-206ENST00000571409 FZD5Q13467 585 aa32.39■■■□□ 2.78
CTDNEP1-206ENST00000571409 NCOA4Q13772 614 aa32.39■■■□□ 2.78
CTDNEP1-206ENST00000571409 CCDC34Q96HJ3 373 aa32.39■■■□□ 2.78
CTDNEP1-206ENST00000571409 PTPRDP23468 1912 aa32.39■■■□□ 2.78
CTDNEP1-206ENST00000571409 VNN1O95497 513 aa32.38■■■□□ 2.77
CTDNEP1-206ENST00000571409 GRIK1P39086 918 aa32.38■■■□□ 2.77
CTDNEP1-206ENST00000571409 RPS9P46781 194 aaKnown RBP32.38■■■□□ 2.77
CTDNEP1-206ENST00000571409 ASCL5Q7RTU5 278 aa32.38■■■□□ 2.77
CTDNEP1-206ENST00000571409 GUF1Q8N442 669 aaKnown RBP32.38■■■□□ 2.77
CTDNEP1-206ENST00000571409 TMC2Q8TDI7 906 aa32.38■■■□□ 2.77
CTDNEP1-206ENST00000571409 DPEP3Q9H4B8 488 aa32.38■■■□□ 2.77
CTDNEP1-206ENST00000571409 SMYD3Q9H7B4 428 aa32.38■■■□□ 2.77
CTDNEP1-206ENST00000571409 MYO15AQ9UKN7 3530 aa32.38■■■□□ 2.77
CTDNEP1-206ENST00000571409 USP34Q70CQ2 3546 aa32.37■■■□□ 2.77
CTDNEP1-206ENST00000571409 GOLGA6L4A6NEF3 574 aa32.37■■■□□ 2.77
CTDNEP1-206ENST00000571409 SOBPA7XYQ1 873 aa32.37■■■□□ 2.77
CTDNEP1-206ENST00000571409 A8MXQ7 604 aa32.37■■■□□ 2.77
CTDNEP1-206ENST00000571409 LAMTOR5O43504 91 aa32.37■■■□□ 2.77
CTDNEP1-206ENST00000571409 SP9P0CG40 484 aa32.37■■■□□ 2.77
CTDNEP1-206ENST00000571409 PTPN1P18031 435 aaKnown RBP32.37■■■□□ 2.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms