RNA–Protein interactions for RNA: ENST00000571028.1

CCDC40-205, Transcript of coiled-coil domain containing 40, humanhuman

TSL 5

Gene CCDC40, Length 593 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-205ENST00000571028 DCAF17Q5H9S7 520 aaPredicted RBP14.29□□□□□ -0.12
CCDC40-205ENST00000571028 N4BP2L1Q5TBK1 243 aaPredicted RBP14.29□□□□□ -0.12
CCDC40-205ENST00000571028 C9orf57Q5W0N0 161 aa14.29□□□□□ -0.12
CCDC40-205ENST00000571028 HEATR6Q6AI08 1181 aaKnown RBP14.29□□□□□ -0.12
CCDC40-205ENST00000571028 WDR49Q8IV35 697 aa14.29□□□□□ -0.12
CCDC40-205ENST00000571028 C1orf127Q8N9H9 656 aa14.29□□□□□ -0.12
CCDC40-205ENST00000571028 C3orf58Q8NDZ4 430 aa14.29□□□□□ -0.12
CCDC40-205ENST00000571028 PARD3BQ8TEW8 1205 aa14.29□□□□□ -0.12
CCDC40-205ENST00000571028 ZNF516Q92618 1163 aa14.29□□□□□ -0.12
CCDC40-205ENST00000571028 CEP63Q96MT8 703 aa14.29□□□□□ -0.12
CCDC40-205ENST00000571028 MED15Q96RN5 788 aa14.29□□□□□ -0.12
CCDC40-205ENST00000571028 TSPAN18Q96SJ8 248 aa14.29□□□□□ -0.12
CCDC40-205ENST00000571028 DNAJC25Q9H1X3 360 aa14.29□□□□□ -0.12
CCDC40-205ENST00000571028 TDRD15B5MCY1 1934 aaKnown RBP14.29□□□□□ -0.12
CCDC40-205ENST00000571028 PRRG1O14668 218 aa14.28□□□□□ -0.12
CCDC40-205ENST00000571028 LETM1O95202 739 aaPredicted RBP14.28□□□□□ -0.12
CCDC40-205ENST00000571028 LRPAP1P30533 357 aa14.28□□□□□ -0.12
CCDC40-205ENST00000571028 GDI1P31150 447 aa14.28□□□□□ -0.12
CCDC40-205ENST00000571028 ELF1P32519 619 aa14.28□□□□□ -0.12
CCDC40-205ENST00000571028 LRRC32Q14392 662 aa14.28□□□□□ -0.12
CCDC40-205ENST00000571028 ACAP1Q15027 740 aa14.28□□□□□ -0.12
CCDC40-205ENST00000571028 CD300LGQ6UXG3 332 aa14.28□□□□□ -0.12
CCDC40-205ENST00000571028 DSTYKQ6XUX3 929 aa14.28□□□□□ -0.12
CCDC40-205ENST00000571028 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.28□□□□□ -0.12
CCDC40-205ENST00000571028 INTS8Q75QN2 995 aaKnown RBP14.28□□□□□ -0.12
CCDC40-205ENST00000571028 TRAPPC11Q7Z392 1133 aa14.28□□□□□ -0.12
CCDC40-205ENST00000571028 FILIP1Q7Z7B0 1213 aa14.28□□□□□ -0.12
CCDC40-205ENST00000571028 LONP2Q86WA8 852 aa14.28□□□□□ -0.12
CCDC40-205ENST00000571028 NT5DC4Q86YG4 428 aa14.28□□□□□ -0.12
CCDC40-205ENST00000571028 TMC2Q8TDI7 906 aa14.28□□□□□ -0.12
CCDC40-205ENST00000571028 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.28□□□□□ -0.12
CCDC40-205ENST00000571028 CDY1Q9Y6F8 540 aa14.28□□□□□ -0.12
CCDC40-205ENST00000571028 BAHCC1Q9P281 2608 aa14.28□□□□□ -0.12
CCDC40-205ENST00000571028 CITO14578 2027 aa14.27□□□□□ -0.12
CCDC40-205ENST00000571028 ZNF197O14709 1029 aa14.27□□□□□ -0.13
CCDC40-205ENST00000571028 SLC16A3O15427 465 aaKnown RBP14.27□□□□□ -0.13
CCDC40-205ENST00000571028 HRO43593 1189 aa14.27□□□□□ -0.13
CCDC40-205ENST00000571028 FGFR1OPO95684 399 aaKnown RBP14.27□□□□□ -0.13
CCDC40-205ENST00000571028 PROS1P07225 676 aa14.27□□□□□ -0.13
CCDC40-205ENST00000571028 CCDC192P0DO97 292 aa14.27□□□□□ -0.13
CCDC40-205ENST00000571028 PTPN2P17706 415 aa14.27□□□□□ -0.13
CCDC40-205ENST00000571028 ERCC5P28715 1186 aaPredicted RBP14.27□□□□□ -0.13
CCDC40-205ENST00000571028 GCLMP48507 274 aa14.27□□□□□ -0.13
CCDC40-205ENST00000571028 RBP5P82980 135 aa14.27□□□□□ -0.13
CCDC40-205ENST00000571028 SRSF5Q13243 272 aaKnown RBP14.27□□□□□ -0.13
CCDC40-205ENST00000571028 TRPC3Q13507 836 aa14.27□□□□□ -0.13
CCDC40-205ENST00000571028 SLC5A9Q2M3M2 681 aa14.27□□□□□ -0.13
CCDC40-205ENST00000571028 ANO6Q4KMQ2 910 aa14.27□□□□□ -0.13
CCDC40-205ENST00000571028 PDZD4Q76G19 769 aaPredicted RBP14.27□□□□□ -0.13
CCDC40-205ENST00000571028 USP37Q86T82 979 aa14.27□□□□□ -0.13
CCDC40-205ENST00000571028 SPEM1Q8N4L4 309 aa14.27□□□□□ -0.13
CCDC40-205ENST00000571028 ELMO3Q96BJ8 720 aa14.27□□□□□ -0.13
CCDC40-205ENST00000571028 CORO1BQ9BR76 489 aa14.27□□□□□ -0.13
CCDC40-205ENST00000571028 MKNK1Q9BUB5 465 aa14.27□□□□□ -0.13
CCDC40-205ENST00000571028 MTRRQ9UBK8 725 aa14.27□□□□□ -0.13
CCDC40-205ENST00000571028 ARMCX3Q9UH62 379 aaPredicted RBP14.27□□□□□ -0.13
CCDC40-205ENST00000571028 ITGA11Q9UKX5 1188 aa14.27□□□□□ -0.13
CCDC40-205ENST00000571028 TIMM13Q9Y5L4 95 aaPredicted RBP14.27□□□□□ -0.13
CCDC40-205ENST00000571028 TRIP11Q15643 1979 aa14.27□□□□□ -0.13
CCDC40-205ENST00000571028 MTCL1Q9Y4B5 1905 aaKnown RBP14.26□□□□□ -0.13
CCDC40-205ENST00000571028 PIRO00625 290 aa14.26□□□□□ -0.13
CCDC40-205ENST00000571028 ZNF263O14978 683 aa14.26□□□□□ -0.13
CCDC40-205ENST00000571028 MAPK13O15264 365 aa14.26□□□□□ -0.13
CCDC40-205ENST00000571028 TRAPPC3O43617 180 aa14.26□□□□□ -0.13
CCDC40-205ENST00000571028 CST3P01034 146 aaPredicted RBP14.26□□□□□ -0.13
CCDC40-205ENST00000571028 PSMC3P17980 439 aa14.26□□□□□ -0.13
CCDC40-205ENST00000571028 TKTP29401 623 aaKnown RBP14.26□□□□□ -0.13
CCDC40-205ENST00000571028 TAF6P49848 677 aa14.26□□□□□ -0.13
CCDC40-205ENST00000571028 LIMK1P53667 647 aa14.26□□□□□ -0.13
CCDC40-205ENST00000571028 PPP3CAQ08209 521 aa14.26□□□□□ -0.13
CCDC40-205ENST00000571028 ZSCAN23Q3MJ62 389 aa14.26□□□□□ -0.13
CCDC40-205ENST00000571028 FAM78AQ5JUQ0 283 aa14.26□□□□□ -0.13
CCDC40-205ENST00000571028 ZC3H3Q8IXZ2 948 aaKnown RBP14.26□□□□□ -0.13
CCDC40-205ENST00000571028 ZNF687Q8N1G0 1237 aa14.26□□□□□ -0.13
CCDC40-205ENST00000571028 ELMOD1Q8N336 334 aa14.26□□□□□ -0.13
CCDC40-205ENST00000571028 FAM160A2Q8N612 972 aaPredicted RBP14.26□□□□□ -0.13
CCDC40-205ENST00000571028 FAM200AQ8TCP9 573 aa14.26□□□□□ -0.13
CCDC40-205ENST00000571028 CSGALNACT1Q8TDX6 532 aa14.26□□□□□ -0.13
CCDC40-205ENST00000571028 TMEM174Q8WUU8 243 aa14.26□□□□□ -0.13
CCDC40-205ENST00000571028 ZNF334Q9HCZ1 680 aaPredicted RBP14.26□□□□□ -0.13
CCDC40-205ENST00000571028 AVENQ9NQS1 362 aaPredicted RBP14.26□□□□□ -0.13
CCDC40-205ENST00000571028 MAGEC2Q9UBF1 373 aaPredicted RBP14.26□□□□□ -0.13
CCDC40-205ENST00000571028 SIX4Q9UIU6 781 aa14.26□□□□□ -0.13
CCDC40-205ENST00000571028 ATRXP46100 2492 aa14.25□□□□□ -0.13
CCDC40-205ENST00000571028 ANO9A1A5B4 782 aa14.25□□□□□ -0.13
CCDC40-205ENST00000571028 SHISA7A6NL88 538 aa14.25□□□□□ -0.13
CCDC40-205ENST00000571028 TMEM189-UBE2V1I3L0A0 370 aa14.25□□□□□ -0.13
CCDC40-205ENST00000571028 FCARP24071 287 aa14.25□□□□□ -0.13
CCDC40-205ENST00000571028 PIK3CAP42336 1068 aa14.25□□□□□ -0.13
CCDC40-205ENST00000571028 MTIF2P46199 727 aaKnown RBP14.25□□□□□ -0.13
CCDC40-205ENST00000571028 LILRA4P59901 499 aa14.25□□□□□ -0.13
CCDC40-205ENST00000571028 MYL6P60660 151 aa14.25□□□□□ -0.13
CCDC40-205ENST00000571028 SF3A2Q15428 464 aaKnown RBP14.25□□□□□ -0.13
CCDC40-205ENST00000571028 C1orf220Q5T0J3 134 aa14.25□□□□□ -0.13
CCDC40-205ENST00000571028 CYP4A22Q5TCH4 519 aa14.25□□□□□ -0.13
CCDC40-205ENST00000571028 TDRD10Q5VZ19 366 aaKnown RBP14.25□□□□□ -0.13
CCDC40-205ENST00000571028 C1orf228Q6PIY5 440 aa14.25□□□□□ -0.13
CCDC40-205ENST00000571028 ANKS3Q6ZW76 656 aa14.25□□□□□ -0.13
CCDC40-205ENST00000571028 SV2AQ7L0J3 742 aa14.25□□□□□ -0.13
CCDC40-205ENST00000571028 YAF2Q8IY57 180 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms