RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 CSH1P0DML2 217 aa11.97□□□□□ -0.49
VPS53-207ENST00000570510 CSH2P0DML3 217 aa11.97□□□□□ -0.49
VPS53-207ENST00000570510 CD59P13987 128 aa11.97□□□□□ -0.49
VPS53-207ENST00000570510 PAX3P23760 479 aa11.97□□□□□ -0.49
VPS53-207ENST00000570510 TIE1P35590 1138 aa11.97□□□□□ -0.49
VPS53-207ENST00000570510 CCT6AP40227 531 aaKnown RBP11.97□□□□□ -0.49
VPS53-207ENST00000570510 SMTNP53814 917 aa11.97□□□□□ -0.49
VPS53-207ENST00000570510 LILRA4P59901 499 aa11.97□□□□□ -0.49
VPS53-207ENST00000570510 TRIM29Q14134 588 aa11.97□□□□□ -0.49
VPS53-207ENST00000570510 SLC36A4Q6YBV0 504 aa11.97□□□□□ -0.49
VPS53-207ENST00000570510 DCP1BQ8IZD4 617 aaKnown RBP11.97□□□□□ -0.49
VPS53-207ENST00000570510 RGL4Q8IZJ4 473 aa11.97□□□□□ -0.49
VPS53-207ENST00000570510 ALLCQ8N6M5 410 aa11.97□□□□□ -0.49
VPS53-207ENST00000570510 FRMD1Q8N878 549 aa11.97□□□□□ -0.49
VPS53-207ENST00000570510 FSIP1Q8NA03 581 aa11.97□□□□□ -0.49
VPS53-207ENST00000570510 TXNDC5Q8NBS9 432 aaKnown RBP11.97□□□□□ -0.49
VPS53-207ENST00000570510 OR2I1PQ8NGU4 316 aa11.97□□□□□ -0.49
VPS53-207ENST00000570510 OLIG1Q8TAK6 271 aa11.97□□□□□ -0.49
VPS53-207ENST00000570510 SLC39A7Q92504 469 aa11.97□□□□□ -0.49
VPS53-207ENST00000570510 ZBTB45Q96K62 511 aaPredicted RBP11.97□□□□□ -0.49
VPS53-207ENST00000570510 MTMR9Q96QG7 549 aa11.97□□□□□ -0.49
VPS53-207ENST00000570510 ORC3Q9UBD5 711 aaPredicted RBP11.97□□□□□ -0.49
VPS53-207ENST00000570510 HELZ2Q9BYK8 2649 aaKnown RBP11.96□□□□□ -0.49
VPS53-207ENST00000570510 STK36Q9NRP7 1315 aa11.96□□□□□ -0.49
VPS53-207ENST00000570510 TCRBV21S2A2A0A5A6 115 aa11.96□□□□□ -0.49
VPS53-207ENST00000570510 K7EQS6 105 aa11.96□□□□□ -0.49
VPS53-207ENST00000570510 SLC16A4O15374 487 aa11.96□□□□□ -0.49
VPS53-207ENST00000570510 PRPF40AO75400 957 aaKnown RBP11.96□□□□□ -0.49
VPS53-207ENST00000570510 HAPLN1P10915 354 aaPredicted RBP11.96□□□□□ -0.49
VPS53-207ENST00000570510 PROZP22891 400 aa11.96□□□□□ -0.49
VPS53-207ENST00000570510 ABCG1P45844 678 aa11.96□□□□□ -0.49
VPS53-207ENST00000570510 AARSP49588 968 aaKnown RBP eCLIP11.96□□□□□ -0.49
VPS53-207ENST00000570510 ZNF33AQ06730 810 aa11.96□□□□□ -0.49
VPS53-207ENST00000570510 NBR1Q14596 966 aa11.96□□□□□ -0.49
VPS53-207ENST00000570510 KCNB1Q14721 858 aa11.96□□□□□ -0.49
VPS53-207ENST00000570510 EML3Q32P44 896 aa11.96□□□□□ -0.49
VPS53-207ENST00000570510 PLEKHG6Q3KR16 790 aa11.96□□□□□ -0.49
VPS53-207ENST00000570510 HSF5Q4G112 596 aaPredicted RBP11.96□□□□□ -0.49
VPS53-207ENST00000570510 TMEM92Q6UXU6 159 aa11.96□□□□□ -0.49
VPS53-207ENST00000570510 NAXDQ8IW45 347 aa11.96□□□□□ -0.49
VPS53-207ENST00000570510 OR10T2Q8NGX3 314 aa11.96□□□□□ -0.49
VPS53-207ENST00000570510 SETD7Q8WTS6 366 aaKnown RBP11.96□□□□□ -0.49
VPS53-207ENST00000570510 DCBLD2Q96PD2 775 aa11.96□□□□□ -0.49
VPS53-207ENST00000570510 CYP2S1Q96SQ9 504 aa11.96□□□□□ -0.49
VPS53-207ENST00000570510 ZCWPW1Q9H0M4 648 aa11.96□□□□□ -0.49
VPS53-207ENST00000570510 PDRG1Q9NUG6 133 aa11.96□□□□□ -0.49
VPS53-207ENST00000570510 DNAAF2Q9NVR5 837 aaKnown RBP11.96□□□□□ -0.49
VPS53-207ENST00000570510 KCNG1Q9UIX4 513 aa11.96□□□□□ -0.49
VPS53-207ENST00000570510 PCDHB5Q9Y5E4 795 aa11.96□□□□□ -0.49
VPS53-207ENST00000570510 TK2O00142 265 aa11.95□□□□□ -0.5
VPS53-207ENST00000570510 HIP1RO75146 1068 aa11.95□□□□□ -0.5
VPS53-207ENST00000570510 APODP05090 189 aa11.95□□□□□ -0.5
VPS53-207ENST00000570510 GNSP15586 552 aa11.95□□□□□ -0.5
VPS53-207ENST00000570510 MUTP22033 750 aa11.95□□□□□ -0.5
VPS53-207ENST00000570510 GUCY2FP51841 1108 aa11.95□□□□□ -0.5
VPS53-207ENST00000570510 TSPY1Q01534 308 aa11.95□□□□□ -0.5
VPS53-207ENST00000570510 CYP4F3Q08477 520 aa11.95□□□□□ -0.5
VPS53-207ENST00000570510 KYAT1Q16773 422 aa11.95□□□□□ -0.5
VPS53-207ENST00000570510 SYCP2LQ5T4T6 812 aa11.95□□□□□ -0.5
VPS53-207ENST00000570510 TOGARAM2Q6ZUX3 1019 aa11.95□□□□□ -0.5
VPS53-207ENST00000570510 TMEM150AQ86TG1 271 aa11.95□□□□□ -0.5
VPS53-207ENST00000570510 TMEM130Q8N3G9 435 aa11.95□□□□□ -0.5
VPS53-207ENST00000570510 RIN3Q8TB24 985 aa11.95□□□□□ -0.5
VPS53-207ENST00000570510 SPATA18Q8TC71 538 aa11.95□□□□□ -0.5
VPS53-207ENST00000570510 SH3RF2Q8TEC5 729 aa11.95□□□□□ -0.5
VPS53-207ENST00000570510 LINC00597Q9H2U6 94 aa11.95□□□□□ -0.5
VPS53-207ENST00000570510 TMEM206Q9H813 350 aa11.95□□□□□ -0.5
VPS53-207ENST00000570510 RPF1Q9H9Y2 349 aaKnown RBP11.95□□□□□ -0.5
VPS53-207ENST00000570510 CAPN10Q9HC96 672 aa11.95□□□□□ -0.5
VPS53-207ENST00000570510 CACNA2D2Q9NY47 1150 aa11.95□□□□□ -0.5
VPS53-207ENST00000570510 ARHGAP28Q9P2N2 729 aa11.95□□□□□ -0.5
VPS53-207ENST00000570510 SUSD2Q9UGT4 822 aa11.95□□□□□ -0.5
VPS53-207ENST00000570510 KIAA1024Q9UPX6 916 aa11.95□□□□□ -0.5
VPS53-207ENST00000570510 TTC26A0AVF1 554 aa11.94□□□□□ -0.5
VPS53-207ENST00000570510 LACTBL1A8MY62 500 aa11.94□□□□□ -0.5
VPS53-207ENST00000570510 BTBD18B2RXH4 712 aa11.94□□□□□ -0.5
VPS53-207ENST00000570510 SGK1O00141 431 aa11.94□□□□□ -0.5
VPS53-207ENST00000570510 TULP1O00294 542 aaPredicted RBP11.94□□□□□ -0.5
VPS53-207ENST00000570510 CYB561D2O14569 222 aa11.94□□□□□ -0.5
VPS53-207ENST00000570510 CAPN9O14815 690 aa11.94□□□□□ -0.5
VPS53-207ENST00000570510 NDUFS2O75306 463 aa11.94□□□□□ -0.5
VPS53-207ENST00000570510 HMGA1P17096 107 aaKnown RBP11.94□□□□□ -0.5
VPS53-207ENST00000570510 PDE6CP51160 858 aa11.94□□□□□ -0.5
VPS53-207ENST00000570510 RPL10AP62906 217 aaKnown RBP11.94□□□□□ -0.5
VPS53-207ENST00000570510 SCRN1Q12765 414 aa11.94□□□□□ -0.5
VPS53-207ENST00000570510 ZNF77Q15935 545 aa11.94□□□□□ -0.5
VPS53-207ENST00000570510 MAP7D1Q3KQU3 841 aa11.94□□□□□ -0.5
VPS53-207ENST00000570510 PEAR1Q5VY43 1037 aaPredicted RBP11.94□□□□□ -0.5
VPS53-207ENST00000570510 NUDT18Q6ZVK8 323 aa11.94□□□□□ -0.5
VPS53-207ENST00000570510 IL17RCQ8NAC3 791 aa11.94□□□□□ -0.5
VPS53-207ENST00000570510 TSPAN18Q96SJ8 248 aa11.94□□□□□ -0.5
VPS53-207ENST00000570510 PNKPQ96T60 521 aa11.94□□□□□ -0.5
VPS53-207ENST00000570510 PYM1Q9BRP8 204 aaKnown RBP11.94□□□□□ -0.5
VPS53-207ENST00000570510 PI4K2AQ9BTU6 479 aa11.94□□□□□ -0.5
VPS53-207ENST00000570510 TMEM60Q9H2L4 133 aa11.94□□□□□ -0.5
VPS53-207ENST00000570510 FAM124BQ9H5Z6 455 aaPredicted RBP11.94□□□□□ -0.5
VPS53-207ENST00000570510 C17orf75Q9HAS0 396 aa11.94□□□□□ -0.5
VPS53-207ENST00000570510 UPF2Q9HAU5 1272 aaKnown RBP11.94□□□□□ -0.5
VPS53-207ENST00000570510 DDX19AQ9NUU7 478 aaKnown RBP11.94□□□□□ -0.5
VPS53-207ENST00000570510 DNM3Q9UQ16 869 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms