RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 MMGT1Q8N4V1 131 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 C1orf131Q8NDD1 294 aaKnown RBP8.44□□□□□ -1.06
VPS39-213ENST00000570062 OLIG1Q8TAK6 271 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 FEZF2Q8TBJ5 459 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 URGCPQ8TCY9 931 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 FNIP1Q8TF40 1166 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 ATRIPQ8WXE1 791 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.44□□□□□ -1.06
VPS39-213ENST00000570062 SEPT8Q92599 483 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 C18orf8Q96DM3 657 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 PKNOX2Q96KN3 472 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 ZMAT2Q96NC0 199 aaKnown RBP8.44□□□□□ -1.06
VPS39-213ENST00000570062 PPP1R10Q96QC0 940 aaKnown RBP8.44□□□□□ -1.06
VPS39-213ENST00000570062 ADAM2Q99965 735 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 NUP85Q9BW27 656 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 APOL6Q9BWW8 343 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 OXCT2Q9BYC2 517 aaPredicted RBP8.44□□□□□ -1.06
VPS39-213ENST00000570062 SYNCQ9H7C4 482 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 RSAD1Q9HA92 442 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.44□□□□□ -1.06
VPS39-213ENST00000570062 HOMER3Q9NSC5 361 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 SALL4Q9UJQ4 1053 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 MTUS1Q9ULD2 1270 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 STXBP5LQ9Y2K9 1186 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 ALG6Q9Y672 507 aa8.44□□□□□ -1.06
VPS39-213ENST00000570062 THSD7BQ9C0I4 1608 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 MGAMO43451 1857 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 ARL5CA6NH57 179 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 A8MXQ7 604 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 J3QL48 77 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 PGRMC1O00264 195 aaKnown RBP8.43□□□□□ -1.06
VPS39-213ENST00000570062 KCNK3O14649 394 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 MEFVO15553 781 aaPredicted RBP8.43□□□□□ -1.06
VPS39-213ENST00000570062 ATP8B1O43520 1251 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 TRAPPC3O43617 180 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 SPOPO43791 374 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 PROSCO94903 275 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 GHRP10912 638 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 PCSK1P29120 753 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 CD52P31358 61 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 RFC2P35250 354 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 SCNN1AP37088 669 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 GABRB2P47870 512 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 NDST1P52848 882 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 RWDD2BP57060 319 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 LILRA4P59901 499 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 TUSC3Q13454 348 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 BRD3Q15059 726 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 HADHQ16836 314 aaKnown RBP8.43□□□□□ -1.06
VPS39-213ENST00000570062 MAP9Q49MG5 647 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 ODF2Q5BJF6 829 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 HABP4Q5JVS0 413 aaKnown RBP8.43□□□□□ -1.06
VPS39-213ENST00000570062 ZNF618Q5T7W0 954 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 DNAJC24Q6P3W2 148 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 DCUN1D2Q6PH85 259 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 DSTYKQ6XUX3 929 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 RSRC2Q7L4I2 434 aaKnown RBP8.43□□□□□ -1.06
VPS39-213ENST00000570062 ARCQ7LC44 396 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 ANKRD33Q7Z3H0 272 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 MAATS1Q7Z4T9 603 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 ECHDC2Q86YB7 292 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 THEM5Q8N1Q8 247 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 RASGEF1CQ8N431 466 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 EIF1ADQ8N9N8 165 aaKnown RBP8.43□□□□□ -1.06
VPS39-213ENST00000570062 SLC4A11Q8NBS3 891 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 C3orf20Q8ND61 904 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 OR6B3Q8NGW1 331 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 CCDC26Q8TAB7 109 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 CPA5Q8WXQ8 436 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 HSFY1Q96LI6 401 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.43□□□□□ -1.062e-6■■■■□ 19.5
VPS39-213ENST00000570062 UBXN6Q9BZV1 441 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 RNF208Q9H0X6 261 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 AGO3Q9H9G7 860 aaKnown RBP8.43□□□□□ -1.06
VPS39-213ENST00000570062 TRMT13Q9NUP7 481 aaKnown RBP8.43□□□□□ -1.06
VPS39-213ENST00000570062 TAS2R14Q9NYV8 317 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 FEZ2Q9UHY8 353 aaPredicted RBP8.43□□□□□ -1.06
VPS39-213ENST00000570062 POLIQ9UNA4 740 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.43□□□□□ -1.06
VPS39-213ENST00000570062 TFR2Q9UP52 801 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 HES2Q9Y543 173 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 PCDHA3Q9Y5H8 950 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 ZSWIM8A7E2V4 1837 aa8.43□□□□□ -1.06
VPS39-213ENST00000570062 SIGLEC16A6NMB1 481 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 O00370 1275 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 CYB561D2O14569 222 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 FANCGO15287 622 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 SART1O43290 800 aaKnown RBP8.42□□□□□ -1.06
VPS39-213ENST00000570062 PSTPIP1O43586 416 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 EFCAB14O75071 495 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 DXOO77932 396 aaKnown RBP8.42□□□□□ -1.06
VPS39-213ENST00000570062 FTCDO95954 541 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 ERBB2P04626 1255 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 ODC1P11926 461 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 KRT3P12035 628 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 CCL5P13501 91 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 RRM1P23921 792 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 CTNNA1P35221 906 aaKnown RBP8.42□□□□□ -1.06
VPS39-213ENST00000570062 CAP1Q01518 475 aa8.42□□□□□ -1.06
VPS39-213ENST00000570062 MAMLD1Q13495 774 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms