RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 ZNF77Q15935 545 aa12.23□□□□□ -0.45
CDH3-208ENST00000569036 GAB4Q2WGN9 574 aa12.23□□□□□ -0.45
CDH3-208ENST00000569036 HSF5Q4G112 596 aaPredicted RBP12.23□□□□□ -0.45
CDH3-208ENST00000569036 TXNDC8Q6A555 127 aa12.23□□□□□ -0.45
CDH3-208ENST00000569036 ALKAL1Q6UXT8 129 aa12.23□□□□□ -0.45
CDH3-208ENST00000569036 ZBTB8OSQ8IWT0 167 aa12.23□□□□□ -0.45
CDH3-208ENST00000569036 FGF11Q92914 225 aa12.23□□□□□ -0.45
CDH3-208ENST00000569036 C18orf25Q96B23 403 aaPredicted RBP12.23□□□□□ -0.45
CDH3-208ENST00000569036 OXCT2Q9BYC2 517 aaPredicted RBP12.23□□□□□ -0.45
CDH3-208ENST00000569036 CCDC113Q9H0I3 377 aa12.23□□□□□ -0.45
CDH3-208ENST00000569036 ZDHHC4Q9NPG8 344 aa12.23□□□□□ -0.45
CDH3-208ENST00000569036 GPRC5CQ9NQ84 441 aa12.23□□□□□ -0.45
CDH3-208ENST00000569036 CALCOCO1Q9P1Z2 691 aa12.23□□□□□ -0.45
CDH3-208ENST00000569036 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.23□□□□□ -0.45
CDH3-208ENST00000569036 PCDHGB2Q9Y5G2 931 aa12.23□□□□□ -0.45
CDH3-208ENST00000569036 TIMM13Q9Y5L4 95 aaPredicted RBP12.23□□□□□ -0.45
CDH3-208ENST00000569036 KNL1Q8NG31 2342 aa12.23□□□□□ -0.45
CDH3-208ENST00000569036 FBN2P35556 2912 aa12.23□□□□□ -0.45
CDH3-208ENST00000569036 BSNQ9UPA5 3926 aa12.22□□□□□ -0.45
CDH3-208ENST00000569036 OR6C75A6NL08 312 aa12.22□□□□□ -0.45
CDH3-208ENST00000569036 ENO4A6NNW6 628 aa12.22□□□□□ -0.45
CDH3-208ENST00000569036 GABRG2P18507 467 aa12.22□□□□□ -0.45
CDH3-208ENST00000569036 MAOBP27338 520 aa12.22□□□□□ -0.45
CDH3-208ENST00000569036 MATKP42679 507 aa12.22□□□□□ -0.45
CDH3-208ENST00000569036 CLDN6P56747 220 aa12.22□□□□□ -0.45
CDH3-208ENST00000569036 MESP2Q0VG99 397 aa12.22□□□□□ -0.45
CDH3-208ENST00000569036 USP4Q13107 963 aa12.22□□□□□ -0.45
CDH3-208ENST00000569036 NR1H3Q13133 447 aa12.22□□□□□ -0.45
CDH3-208ENST00000569036 RTP5Q14D33 572 aa12.22□□□□□ -0.45
CDH3-208ENST00000569036 EMC10Q5UCC4 262 aa12.22□□□□□ -0.45
CDH3-208ENST00000569036 EFCAB13Q8IY85 973 aa12.22□□□□□ -0.45
CDH3-208ENST00000569036 CEP120Q8N960 986 aa12.22□□□□□ -0.45
CDH3-208ENST00000569036 TTC16Q8NEE8 873 aa12.22□□□□□ -0.45
CDH3-208ENST00000569036 TMEM176AQ96HP8 235 aa12.22□□□□□ -0.45
CDH3-208ENST00000569036 ZNF419Q96HQ0 510 aaPredicted RBP12.22□□□□□ -0.45
CDH3-208ENST00000569036 SEPT5Q99719 369 aaPredicted RBP12.22□□□□□ -0.45
CDH3-208ENST00000569036 CPNE5Q9HCH3 593 aa12.22□□□□□ -0.45
CDH3-208ENST00000569036 DDX25Q9UHL0 483 aaKnown RBP12.22□□□□□ -0.45
CDH3-208ENST00000569036 C2CD3Q4AC94 2353 aa12.22□□□□□ -0.45
CDH3-208ENST00000569036 M0QZQ0 153 aa12.21□□□□□ -0.45
CDH3-208ENST00000569036 ACKR2O00590 384 aa12.21□□□□□ -0.45
CDH3-208ENST00000569036 TERTO14746 1132 aaKnown RBP12.21□□□□□ -0.45
CDH3-208ENST00000569036 F11P03951 625 aa12.21□□□□□ -0.45
CDH3-208ENST00000569036 LIG1P18858 919 aa12.21□□□□□ -0.45
CDH3-208ENST00000569036 KIR2DL1P43626 348 aaPredicted RBP12.21□□□□□ -0.45
CDH3-208ENST00000569036 CCR10P46092 362 aa12.21□□□□□ -0.45
CDH3-208ENST00000569036 YARSP54577 528 aaKnown RBP12.21□□□□□ -0.45
CDH3-208ENST00000569036 NLRP12P59046 1061 aa12.21□□□□□ -0.45
CDH3-208ENST00000569036 BNC1Q01954 994 aa12.21□□□□□ -0.45
CDH3-208ENST00000569036 HDAC1Q13547 482 aaPredicted RBP12.21□□□□□ -0.45
CDH3-208ENST00000569036 GLIPR1L2Q4G1C9 344 aa12.21□□□□□ -0.45
CDH3-208ENST00000569036 SYCP2LQ5T4T6 812 aa12.21□□□□□ -0.45
CDH3-208ENST00000569036 ARHGAP40Q5TG30 622 aa12.21□□□□□ -0.45
CDH3-208ENST00000569036 PPP4R3AQ6IN85 833 aa12.21□□□□□ -0.45
CDH3-208ENST00000569036 MOXD1Q6UVY6 613 aa12.21□□□□□ -0.45
CDH3-208ENST00000569036 ZNF574Q6ZN55 896 aaPredicted RBP12.21□□□□□ -0.45
CDH3-208ENST00000569036 ERICH1Q86X53 443 aa12.21□□□□□ -0.45
CDH3-208ENST00000569036 RUFY2Q8WXA3 655 aa12.21□□□□□ -0.45
CDH3-208ENST00000569036 ACAP3Q96P50 834 aa12.21□□□□□ -0.45
CDH3-208ENST00000569036 NRSN2Q9GZP1 204 aa12.21□□□□□ -0.45
CDH3-208ENST00000569036 C2orf40Q9H1Z8 148 aa12.21□□□□□ -0.45
CDH3-208ENST00000569036 RWDD1Q9H446 243 aaPredicted RBP12.21□□□□□ -0.45
CDH3-208ENST00000569036 TOPORSQ9NS56 1045 aaPredicted RBP12.21□□□□□ -0.45
CDH3-208ENST00000569036 HSFX1Q9UBD0 423 aa12.21□□□□□ -0.45
CDH3-208ENST00000569036 CYP8B1Q9UNU6 501 aa12.21□□□□□ -0.45
CDH3-208ENST00000569036 SRPK3Q9UPE1 567 aa12.21□□□□□ -0.45
CDH3-208ENST00000569036 TMEM131Q92545 1883 aa12.21□□□□□ -0.46
CDH3-208ENST00000569036 A0A1B0GTW7 788 aa12.2□□□□□ -0.46
CDH3-208ENST00000569036 BRINP1O60477 761 aa12.2□□□□□ -0.46
CDH3-208ENST00000569036 USO1O60763 962 aaKnown RBP12.2□□□□□ -0.46
CDH3-208ENST00000569036 JUPP14923 745 aa12.2□□□□□ -0.46
CDH3-208ENST00000569036 KCNE1P15382 129 aa12.2□□□□□ -0.46
CDH3-208ENST00000569036 HNF1BP35680 557 aa12.2□□□□□ -0.46
CDH3-208ENST00000569036 GRM5P41594 1212 aa12.2□□□□□ -0.46
CDH3-208ENST00000569036 TMPRSS3P57727 454 aa12.2□□□□□ -0.46
CDH3-208ENST00000569036 FAM160A1Q05DH4 1040 aa12.2□□□□□ -0.46
CDH3-208ENST00000569036 MYBPC2Q14324 1141 aa12.2□□□□□ -0.46
CDH3-208ENST00000569036 TAF12Q16514 161 aa12.2□□□□□ -0.46
CDH3-208ENST00000569036 HLA-BQ31612 363 aa12.2□□□□□ -0.46
CDH3-208ENST00000569036 NCAPH2Q6IBW4 605 aa12.2□□□□□ -0.46
CDH3-208ENST00000569036 MON1AQ86VX9 555 aa12.2□□□□□ -0.46
CDH3-208ENST00000569036 TPH2Q8IWU9 490 aa12.2□□□□□ -0.46
CDH3-208ENST00000569036 ZCCHC9Q8N567 271 aaKnown RBP12.2□□□□□ -0.46
CDH3-208ENST00000569036 CCDC148Q8NFR7 591 aa12.2□□□□□ -0.46
CDH3-208ENST00000569036 GIPC2Q8TF65 315 aa12.2□□□□□ -0.46
CDH3-208ENST00000569036 FAM20AQ96MK3 541 aa12.2□□□□□ -0.46
CDH3-208ENST00000569036 LINC00597Q9H2U6 94 aa12.2□□□□□ -0.46
CDH3-208ENST00000569036 KCNMB3Q9NPA1 279 aa12.2□□□□□ -0.46
CDH3-208ENST00000569036 GMIPQ9P107 970 aa12.2□□□□□ -0.46
CDH3-208ENST00000569036 NFATC1O95644 943 aa12.19□□□□□ -0.46
CDH3-208ENST00000569036 ADD1P35611 737 aaKnown RBP12.19□□□□□ -0.46
CDH3-208ENST00000569036 RARRES1P49788 294 aa12.19□□□□□ -0.46
CDH3-208ENST00000569036 CDR1P51861 262 aa12.19□□□□□ -0.46
CDH3-208ENST00000569036 OSTNP61366 133 aa12.19□□□□□ -0.46
CDH3-208ENST00000569036 MGAT5BQ3V5L5 792 aa12.19□□□□□ -0.46
CDH3-208ENST00000569036 WDR45BQ5MNZ6 344 aa12.19□□□□□ -0.46
CDH3-208ENST00000569036 NT5DC1Q5TFE4 455 aa12.19□□□□□ -0.46
CDH3-208ENST00000569036 ATF7IP2Q5U623 682 aa12.19□□□□□ -0.46
CDH3-208ENST00000569036 MAEAQ7L5Y9 396 aa12.19□□□□□ -0.46
CDH3-208ENST00000569036 USP37Q86T82 979 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms