RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 SGSM1Q2NKQ1 1148 aa16.07■□□□□ 0.16
VPS39-210ENST00000568357 ZNF699Q32M78 642 aa16.07■□□□□ 0.16
VPS39-210ENST00000568357 STXBP5Q5T5C0 1151 aa16.07■□□□□ 0.16
VPS39-210ENST00000568357 SPATA2LQ8IUW3 424 aaPredicted RBP16.07■□□□□ 0.16
VPS39-210ENST00000568357 STKLD1Q8NE28 680 aa16.07■□□□□ 0.16
VPS39-210ENST00000568357 OR6B3Q8NGW1 331 aa16.07■□□□□ 0.16
VPS39-210ENST00000568357 ASB16Q96NS5 453 aa16.07■□□□□ 0.16
VPS39-210ENST00000568357 SDCBP2Q9H190 292 aa16.07■□□□□ 0.16
VPS39-210ENST00000568357 SNX25Q9H3E2 840 aa16.07■□□□□ 0.16
VPS39-210ENST00000568357 IL21Q9HBE4 155 aa16.07■□□□□ 0.16
VPS39-210ENST00000568357 ABCB6Q9NP58 842 aa16.07■□□□□ 0.16
VPS39-210ENST00000568357 SLC2A4RGQ9NR83 387 aa16.07■□□□□ 0.16
VPS39-210ENST00000568357 FBXL21Q9UKT6 434 aa16.07■□□□□ 0.16
VPS39-210ENST00000568357 KRBA1A5PL33 1030 aa16.06■□□□□ 0.16
VPS39-210ENST00000568357 TRIM49BA6NDI0 452 aa16.06■□□□□ 0.16
VPS39-210ENST00000568357 CETN3O15182 167 aa16.06■□□□□ 0.16
VPS39-210ENST00000568357 LRRN2O75325 713 aa16.06■□□□□ 0.16
VPS39-210ENST00000568357 HLA-DRAP01903 254 aa16.06■□□□□ 0.16
VPS39-210ENST00000568357 KRT13P13646 458 aa16.06■□□□□ 0.16
VPS39-210ENST00000568357 GABRR2P28476 465 aa16.06■□□□□ 0.16
VPS39-210ENST00000568357 RAP1GAPP47736 663 aa16.06■□□□□ 0.16
VPS39-210ENST00000568357 ENPEPQ07075 957 aa16.06■□□□□ 0.16
VPS39-210ENST00000568357 VEPH1Q14D04 833 aa16.06■□□□□ 0.16
VPS39-210ENST00000568357 CFAP221Q4G0U5 840 aa16.06■□□□□ 0.16
VPS39-210ENST00000568357 ZNF667Q5HYK9 610 aa16.06■□□□□ 0.16
VPS39-210ENST00000568357 SPOPLQ6IQ16 392 aa16.06■□□□□ 0.16
VPS39-210ENST00000568357 GPIHBP1Q8IV16 184 aa16.06■□□□□ 0.16
VPS39-210ENST00000568357 SIX5Q8N196 739 aa16.06■□□□□ 0.16
VPS39-210ENST00000568357 ZSCAN18Q8TBC5 510 aaPredicted RBP16.06■□□□□ 0.16
VPS39-210ENST00000568357 MYCBPAPQ8TBZ2 947 aa16.06■□□□□ 0.16
VPS39-210ENST00000568357 SMARCD2Q92925 531 aa16.06■□□□□ 0.16
VPS39-210ENST00000568357 MYLPFQ96A32 169 aa16.06■□□□□ 0.16
VPS39-210ENST00000568357 ELSPBP1Q96BH3 223 aa16.06■□□□□ 0.16
VPS39-210ENST00000568357 MKNK1Q9BUB5 465 aa16.06■□□□□ 0.16
VPS39-210ENST00000568357 GTPBP4Q9BZE4 634 aaKnown RBP16.06■□□□□ 0.16
VPS39-210ENST00000568357 ATXN3LQ9H3M9 355 aa16.06■□□□□ 0.16
VPS39-210ENST00000568357 DPEP3Q9H4B8 488 aa16.06■□□□□ 0.16
VPS39-210ENST00000568357 SMYD3Q9H7B4 428 aa16.06■□□□□ 0.16
VPS39-210ENST00000568357 CACNA1BQ00975 2339 aa16.05■□□□□ 0.16
VPS39-210ENST00000568357 PPP1R3GB7ZBB8 358 aa16.05■□□□□ 0.16
VPS39-210ENST00000568357 ASS1P00966 412 aaKnown RBP16.05■□□□□ 0.16
VPS39-210ENST00000568357 PTPN1P18031 435 aaKnown RBP16.05■□□□□ 0.16
VPS39-210ENST00000568357 VIPR2P41587 438 aa16.05■□□□□ 0.16
VPS39-210ENST00000568357 MORC3Q14149 939 aa16.05■□□□□ 0.16
VPS39-210ENST00000568357 TAF12Q16514 161 aa16.05■□□□□ 0.16
VPS39-210ENST00000568357 MDH1BQ5I0G3 518 aa16.05■□□□□ 0.16
VPS39-210ENST00000568357 TMEM150AQ86TG1 271 aa16.05■□□□□ 0.16
VPS39-210ENST00000568357 ZC3H3Q8IXZ2 948 aaKnown RBP16.05■□□□□ 0.16
VPS39-210ENST00000568357 TAS1R2Q8TE23 839 aa16.05■□□□□ 0.16
VPS39-210ENST00000568357 PCED1BQ96HM7 432 aa16.05■□□□□ 0.16
VPS39-210ENST00000568357 DHTKD1Q96HY7 919 aaPredicted RBP16.05■□□□□ 0.16
VPS39-210ENST00000568357 FUBP3Q96I24 572 aaKnown RBP eCLIP16.05■□□□□ 0.16
VPS39-210ENST00000568357 TSG101Q99816 390 aa16.05■□□□□ 0.16
VPS39-210ENST00000568357 GPR88Q9GZN0 384 aa16.05■□□□□ 0.16
VPS39-210ENST00000568357 MMRN2Q9H8L6 949 aa16.05■□□□□ 0.16
VPS39-210ENST00000568357 ZFP14Q9HCL3 533 aa16.05■□□□□ 0.16
VPS39-210ENST00000568357 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.05■□□□□ 0.16
VPS39-210ENST00000568357 MAGEC2Q9UBF1 373 aaPredicted RBP16.05■□□□□ 0.16
VPS39-210ENST00000568357 CA14Q9ULX7 337 aa16.05■□□□□ 0.16
VPS39-210ENST00000568357 A8MXQ7 604 aa16.04■□□□□ 0.16
VPS39-210ENST00000568357 BIN1O00499 593 aa16.04■□□□□ 0.16
VPS39-210ENST00000568357 CLSTN1O94985 981 aa16.04■□□□□ 0.16
VPS39-210ENST00000568357 FGF19O95750 216 aa16.04■□□□□ 0.16
VPS39-210ENST00000568357 BDNFP23560 247 aa16.04■□□□□ 0.16
VPS39-210ENST00000568357 CCNE1P24864 410 aa16.04■□□□□ 0.16
VPS39-210ENST00000568357 MAGEA11P43364 429 aa16.04■□□□□ 0.16
VPS39-210ENST00000568357 RPL10AP62906 217 aaKnown RBP16.04■□□□□ 0.16
VPS39-210ENST00000568357 FKBP3Q00688 224 aaKnown RBP16.04■□□□□ 0.16
VPS39-210ENST00000568357 CYP27A1Q02318 531 aa16.04■□□□□ 0.16
VPS39-210ENST00000568357 MAPRE1Q15691 268 aaKnown RBP16.04■□□□□ 0.16
VPS39-210ENST00000568357 CAMK4Q16566 473 aa16.04■□□□□ 0.16
VPS39-210ENST00000568357 SCARA5Q6ZMJ2 495 aa16.04■□□□□ 0.16
VPS39-210ENST00000568357 C4orf50Q6ZRC1 276 aa16.04■□□□□ 0.16
VPS39-210ENST00000568357 SCN4BQ8IWT1 228 aa16.04■□□□□ 0.16
VPS39-210ENST00000568357 TAF4BQ92750 862 aa16.04■□□□□ 0.16
VPS39-210ENST00000568357 RMDN1Q96DB5 314 aa16.04■□□□□ 0.16
VPS39-210ENST00000568357 RSPRY1Q96DX4 576 aa16.04■□□□□ 0.16
VPS39-210ENST00000568357 MFSD1Q9H3U5 465 aa16.04■□□□□ 0.16
VPS39-210ENST00000568357 SLITRK6Q9H5Y7 841 aa16.04■□□□□ 0.16
VPS39-210ENST00000568357 TRPV4Q9HBA0 871 aa16.04■□□□□ 0.16
VPS39-210ENST00000568357 APOBEC3GQ9HC16 384 aaKnown RBP16.04■□□□□ 0.16
VPS39-210ENST00000568357 MAGED2Q9UNF1 606 aaPredicted RBP16.04■□□□□ 0.16
VPS39-210ENST00000568357 DMXL1Q9Y485 3027 aa16.03■□□□□ 0.16
VPS39-210ENST00000568357 NCANO14594 1321 aa16.03■□□□□ 0.16
VPS39-210ENST00000568357 ZFHX4Q86UP3 3567 aa16.03■□□□□ 0.16
VPS39-210ENST00000568357 SLC38A8A6NNN8 435 aa16.03■□□□□ 0.16
VPS39-210ENST00000568357 PI15O43692 258 aa16.03■□□□□ 0.16
VPS39-210ENST00000568357 F11P03951 625 aa16.03■□□□□ 0.16
VPS39-210ENST00000568357 EPB41P11171 864 aaKnown RBP16.03■□□□□ 0.16
VPS39-210ENST00000568357 GTF2H1P32780 548 aa16.03■□□□□ 0.16
VPS39-210ENST00000568357 PIK3CAP42336 1068 aa16.03■□□□□ 0.16
VPS39-210ENST00000568357 ASPAP45381 313 aa16.03■□□□□ 0.16
VPS39-210ENST00000568357 NLRP12P59046 1061 aa16.03■□□□□ 0.16
VPS39-210ENST00000568357 CYP4F8P98187 520 aa16.03■□□□□ 0.16
VPS39-210ENST00000568357 LRRC63Q05C16 580 aa16.03■□□□□ 0.16
VPS39-210ENST00000568357 GRM2Q14416 872 aa16.03■□□□□ 0.16
VPS39-210ENST00000568357 GPR158Q5T848 1215 aa16.03■□□□□ 0.16
VPS39-210ENST00000568357 CWF19L1Q69YN2 538 aaKnown RBP16.03■□□□□ 0.16
VPS39-210ENST00000568357 ASTLQ6HA08 431 aaPredicted RBP16.03■□□□□ 0.16
VPS39-210ENST00000568357 VITQ6UXI7 678 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms