RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 FAM186BQ8IYM0 893 aa19.99■□□□□ 0.79
CLN3-227ENST00000567495 OR6B3Q8NGW1 331 aa19.99■□□□□ 0.79
CLN3-227ENST00000567495 TRMT2BQ96GJ1 504 aaKnown RBP19.99■□□□□ 0.79
CLN3-227ENST00000567495 MYRFLQ96LU7 910 aa19.99■□□□□ 0.79
CLN3-227ENST00000567495 NELL2Q99435 816 aa19.99■□□□□ 0.79
CLN3-227ENST00000567495 MRPL45Q9BRJ2 306 aaKnown RBP19.99■□□□□ 0.79
CLN3-227ENST00000567495 MKNK1Q9BUB5 465 aa19.99■□□□□ 0.79
CLN3-227ENST00000567495 IL21Q9HBE4 155 aa19.99■□□□□ 0.79
CLN3-227ENST00000567495 SIT1Q9Y3P8 196 aa19.99■□□□□ 0.79
CLN3-227ENST00000567495 TSC2P49815 1807 aa19.99■□□□□ 0.79
CLN3-227ENST00000567495 TCHHQ07283 1943 aa19.98■□□□□ 0.79
CLN3-227ENST00000567495 ATP2C2O75185 946 aa19.98■□□□□ 0.79
CLN3-227ENST00000567495 AKAP3O75969 853 aa19.98■□□□□ 0.79
CLN3-227ENST00000567495 NOL4O94818 638 aa19.98■□□□□ 0.79
CLN3-227ENST00000567495 VIPR2P41587 438 aa19.98■□□□□ 0.79
CLN3-227ENST00000567495 CDR1P51861 262 aa19.98■□□□□ 0.79
CLN3-227ENST00000567495 NLRP12P59046 1061 aa19.98■□□□□ 0.79
CLN3-227ENST00000567495 DLG4P78352 724 aa19.98■□□□□ 0.79
CLN3-227ENST00000567495 TCF15Q12870 199 aa19.98■□□□□ 0.79
CLN3-227ENST00000567495 DDR2Q16832 855 aa19.98■□□□□ 0.79
CLN3-227ENST00000567495 ARID3BQ8IVW6 561 aaPredicted RBP19.98■□□□□ 0.79
CLN3-227ENST00000567495 YAF2Q8IY57 180 aa19.98■□□□□ 0.79
CLN3-227ENST00000567495 SPATA17Q96L03 361 aa19.98■□□□□ 0.79
CLN3-227ENST00000567495 DDX23Q9BUQ8 820 aaKnown RBP19.98■□□□□ 0.79
CLN3-227ENST00000567495 OSBPL6Q9BZF3 934 aa19.98■□□□□ 0.79
CLN3-227ENST00000567495 CRTAC1Q9NQ79 661 aa19.98■□□□□ 0.79
CLN3-227ENST00000567495 EHD2Q9NZN4 543 aa19.98■□□□□ 0.79
CLN3-227ENST00000567495 PCDHA5Q9Y5H7 936 aa19.98■□□□□ 0.79
CLN3-227ENST00000567495 KANSL1LA0AUZ9 987 aa19.97■□□□□ 0.79
CLN3-227ENST00000567495 HEPACAM2A8MVW5 462 aa19.97■□□□□ 0.79
CLN3-227ENST00000567495 DPYSL4O14531 572 aa19.97■□□□□ 0.79
CLN3-227ENST00000567495 ZNF263O14978 683 aa19.97■□□□□ 0.79
CLN3-227ENST00000567495 CETN3O15182 167 aa19.97■□□□□ 0.79
CLN3-227ENST00000567495 PI15O43692 258 aa19.97■□□□□ 0.79
CLN3-227ENST00000567495 CLSTN1O94985 981 aa19.97■□□□□ 0.79
CLN3-227ENST00000567495 GTF2H1P32780 548 aa19.97■□□□□ 0.79
CLN3-227ENST00000567495 PPP1R2P41236 205 aa19.97■□□□□ 0.79
CLN3-227ENST00000567495 MCCD1P59942 119 aaPredicted RBP19.97■□□□□ 0.79
CLN3-227ENST00000567495 PSMC1P62191 440 aaKnown RBP19.97■□□□□ 0.79
CLN3-227ENST00000567495 VITQ6UXI7 678 aa19.97■□□□□ 0.79
CLN3-227ENST00000567495 SCN4BQ8IWT1 228 aa19.97■□□□□ 0.79
CLN3-227ENST00000567495 CCDC105Q8IYK2 499 aa19.97■□□□□ 0.79
CLN3-227ENST00000567495 MRPS31Q92665 395 aaKnown RBP19.97■□□□□ 0.79
CLN3-227ENST00000567495 MYLPFQ96A32 169 aa19.97■□□□□ 0.79
CLN3-227ENST00000567495 TSG101Q99816 390 aa19.97■□□□□ 0.79
CLN3-227ENST00000567495 IMPG2Q9BZV3 1241 aa19.97■□□□□ 0.79
CLN3-227ENST00000567495 MRPS17Q9Y2R5 130 aaKnown RBP19.97■□□□□ 0.79
CLN3-227ENST00000567495 SLC38A8A6NNN8 435 aa19.96■□□□□ 0.79
CLN3-227ENST00000567495 A8MXQ7 604 aa19.96■□□□□ 0.79
CLN3-227ENST00000567495 TRIM66O15016 1216 aa19.96■□□□□ 0.79
CLN3-227ENST00000567495 HCRTO43612 131 aa19.96■□□□□ 0.79
CLN3-227ENST00000567495 STX10O60499 249 aa19.96■□□□□ 0.79
CLN3-227ENST00000567495 VNN1O95497 513 aa19.96■□□□□ 0.79
CLN3-227ENST00000567495 F11P03951 625 aa19.96■□□□□ 0.79
CLN3-227ENST00000567495 GLULP15104 373 aa19.96■□□□□ 0.79
CLN3-227ENST00000567495 PTPN1P18031 435 aaKnown RBP19.96■□□□□ 0.79
CLN3-227ENST00000567495 GDI1P31150 447 aa19.96■□□□□ 0.79
CLN3-227ENST00000567495 PRCPP42785 496 aa19.96■□□□□ 0.79
CLN3-227ENST00000567495 GPR15P49685 360 aa19.96■□□□□ 0.79
CLN3-227ENST00000567495 MLLT6P55198 1093 aaPredicted RBP19.96■□□□□ 0.79
CLN3-227ENST00000567495 CYP27A1Q02318 531 aa19.96■□□□□ 0.79
CLN3-227ENST00000567495 FCHO2Q0JRZ9 810 aa19.96■□□□□ 0.79
CLN3-227ENST00000567495 GRM2Q14416 872 aa19.96■□□□□ 0.79
CLN3-227ENST00000567495 DTWD2Q8NBA8 298 aa19.96■□□□□ 0.79
CLN3-227ENST00000567495 PCED1BQ96HM7 432 aa19.96■□□□□ 0.79
CLN3-227ENST00000567495 TNIP3Q96KP6 325 aa19.96■□□□□ 0.79
CLN3-227ENST00000567495 ELOVL4Q9GZR5 314 aa19.96■□□□□ 0.79
CLN3-227ENST00000567495 MAGED2Q9UNF1 606 aaPredicted RBP19.96■□□□□ 0.79
CLN3-227ENST00000567495 MAN2B1O00754 1011 aa19.95■□□□□ 0.78
CLN3-227ENST00000567495 CHADO15335 359 aa19.95■□□□□ 0.78
CLN3-227ENST00000567495 ASS1P00966 412 aaKnown RBP19.95■□□□□ 0.78
CLN3-227ENST00000567495 EPB41P11171 864 aaKnown RBP19.95■□□□□ 0.78
CLN3-227ENST00000567495 TRIM21P19474 475 aaKnown RBP19.95■□□□□ 0.78
CLN3-227ENST00000567495 BDNFP23560 247 aa19.95■□□□□ 0.78
CLN3-227ENST00000567495 ANXA13P27216 316 aa19.95■□□□□ 0.78
CLN3-227ENST00000567495 GRIK1P39086 918 aa19.95■□□□□ 0.78
CLN3-227ENST00000567495 PIK3CAP42336 1068 aa19.95■□□□□ 0.78
CLN3-227ENST00000567495 FKBP3Q00688 224 aaKnown RBP19.95■□□□□ 0.78
CLN3-227ENST00000567495 LRRC63Q05C16 580 aa19.95■□□□□ 0.78
CLN3-227ENST00000567495 STIM1Q13586 685 aa19.95■□□□□ 0.78
CLN3-227ENST00000567495 MDH1BQ5I0G3 518 aa19.95■□□□□ 0.78
CLN3-227ENST00000567495 C1orf220Q5T0J3 134 aa19.95■□□□□ 0.78
CLN3-227ENST00000567495 STXBP5Q5T5C0 1151 aa19.95■□□□□ 0.78
CLN3-227ENST00000567495 C1orf228Q6PIY5 440 aa19.95■□□□□ 0.78
CLN3-227ENST00000567495 ZNF852Q6ZMS4 543 aa19.95■□□□□ 0.78
CLN3-227ENST00000567495 TMEM150AQ86TG1 271 aa19.95■□□□□ 0.78
CLN3-227ENST00000567495 MON1AQ86VX9 555 aa19.95■□□□□ 0.78
CLN3-227ENST00000567495 SMYD4Q8IYR2 804 aaPredicted RBP19.95■□□□□ 0.78
CLN3-227ENST00000567495 CMTM8Q8IZV2 173 aa19.95■□□□□ 0.78
CLN3-227ENST00000567495 CELF5Q8N6W0 485 aaKnown RBP19.95■□□□□ 0.78
CLN3-227ENST00000567495 B3GALNT2Q8NCR0 500 aa19.95■□□□□ 0.78
CLN3-227ENST00000567495 CCDC150Q8NCX0 1101 aa19.95■□□□□ 0.78
CLN3-227ENST00000567495 PJA1Q8NG27 643 aa19.95■□□□□ 0.78
CLN3-227ENST00000567495 THG1LQ9NWX6 298 aaKnown RBP19.95■□□□□ 0.78
CLN3-227ENST00000567495 CHMP5Q9NZZ3 219 aa19.95■□□□□ 0.78
CLN3-227ENST00000567495 ATP8B3O60423 1300 aa19.95■□□□□ 0.78
CLN3-227ENST00000567495 PSMA7O14818 248 aa19.94■□□□□ 0.78
CLN3-227ENST00000567495 NCAM2O15394 837 aa19.94■□□□□ 0.78
CLN3-227ENST00000567495 HLA-DRAP01903 254 aa19.94■□□□□ 0.78
CLN3-227ENST00000567495 AVPR1AP37288 418 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms