RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 TMLHEQ9NVH6 421 aa15.98■□□□□ 0.15
CLN3-222ENST00000566083 SIX4Q9UIU6 781 aa15.98■□□□□ 0.15
CLN3-222ENST00000566083 GTF3C4Q9UKN8 822 aa15.98■□□□□ 0.15
CLN3-222ENST00000566083 CFAP45Q9UL16 551 aa15.98■□□□□ 0.15
CLN3-222ENST00000566083 CDH9Q9ULB4 789 aa15.98■□□□□ 0.15
CLN3-222ENST00000566083 MAGED2Q9UNF1 606 aaPredicted RBP15.98■□□□□ 0.15
CLN3-222ENST00000566083 WDR87Q6ZQQ6 2873 aa15.98■□□□□ 0.15
CLN3-222ENST00000566083 PVALEFA0A1B0GWK0 134 aa15.97■□□□□ 0.15
CLN3-222ENST00000566083 PRR5-ARHGAP8B1AHC4 643 aa15.97■□□□□ 0.15
CLN3-222ENST00000566083 ATG13O75143 517 aa15.97■□□□□ 0.15
CLN3-222ENST00000566083 PFKLP17858 780 aa15.97■□□□□ 0.15
CLN3-222ENST00000566083 CYP2F1P24903 491 aa15.97■□□□□ 0.15
CLN3-222ENST00000566083 ARHGAP8P85298 464 aa15.97■□□□□ 0.15
CLN3-222ENST00000566083 GRSF1Q12849 480 aaKnown RBP eCLIP15.97■□□□□ 0.15
CLN3-222ENST00000566083 PDGFRLQ15198 375 aa15.97■□□□□ 0.15
CLN3-222ENST00000566083 SNRNP35Q16560 246 aaKnown RBP15.97■□□□□ 0.15
CLN3-222ENST00000566083 LAIR1Q6GTX8 287 aa15.97■□□□□ 0.15
CLN3-222ENST00000566083 FAM171BQ6P995 826 aa15.97■□□□□ 0.15
CLN3-222ENST00000566083 UNC13DQ70J99 1090 aa15.97■□□□□ 0.15
CLN3-222ENST00000566083 EPM2AIP1Q7L775 607 aaPredicted RBP15.97■□□□□ 0.15
CLN3-222ENST00000566083 LIMS2Q7Z4I7 341 aa15.97■□□□□ 0.15
CLN3-222ENST00000566083 TMEM150AQ86TG1 271 aa15.97■□□□□ 0.15
CLN3-222ENST00000566083 CBWD2Q8IUF1 395 aa15.97■□□□□ 0.15
CLN3-222ENST00000566083 GOLGA5Q8TBA6 731 aa15.97■□□□□ 0.15
CLN3-222ENST00000566083 ZFYVE19Q96K21 471 aa15.97■□□□□ 0.15
CLN3-222ENST00000566083 PKMYT1Q99640 499 aa15.97■□□□□ 0.15
CLN3-222ENST00000566083 FGFBP2Q9BYJ0 223 aa15.97■□□□□ 0.15
CLN3-222ENST00000566083 MAGEC2Q9UBF1 373 aaPredicted RBP15.97■□□□□ 0.15
CLN3-222ENST00000566083 FOXD2O60548 495 aaPredicted RBP15.96■□□□□ 0.15
CLN3-222ENST00000566083 LRP3O75074 770 aa15.96■□□□□ 0.15
CLN3-222ENST00000566083 USP17L7P0C7H9 530 aa15.96■□□□□ 0.15
CLN3-222ENST00000566083 TNNI1P19237 187 aa15.96■□□□□ 0.15
CLN3-222ENST00000566083 ACAT1P24752 427 aaKnown RBP15.96■□□□□ 0.15
CLN3-222ENST00000566083 SOX9P48436 509 aa15.96■□□□□ 0.15
CLN3-222ENST00000566083 PPP3CCP48454 512 aa15.96■□□□□ 0.15
CLN3-222ENST00000566083 LMNB2Q03252 620 aa15.96■□□□□ 0.15
CLN3-222ENST00000566083 FAM160A1Q05DH4 1040 aa15.96■□□□□ 0.15
CLN3-222ENST00000566083 RUNX3Q13761 415 aa15.96■□□□□ 0.15
CLN3-222ENST00000566083 CCINQ13939 588 aa15.96■□□□□ 0.15
CLN3-222ENST00000566083 DDR2Q16832 855 aa15.96■□□□□ 0.15
CLN3-222ENST00000566083 SHC4Q6S5L8 630 aa15.96■□□□□ 0.15
CLN3-222ENST00000566083 DGLUCYQ7Z3D6 616 aa15.96■□□□□ 0.15
CLN3-222ENST00000566083 LONP2Q86WA8 852 aa15.96■□□□□ 0.15
CLN3-222ENST00000566083 GPIHBP1Q8IV16 184 aa15.96■□□□□ 0.15
CLN3-222ENST00000566083 DCLK2Q8N568 766 aa15.96■□□□□ 0.15
CLN3-222ENST00000566083 XXYLT1Q8NBI6 393 aa15.96■□□□□ 0.15
CLN3-222ENST00000566083 CCDC26Q8TAB7 109 aa15.96■□□□□ 0.15
CLN3-222ENST00000566083 USP13Q92995 863 aaPredicted RBP15.96■□□□□ 0.15
CLN3-222ENST00000566083 RMDN1Q96DB5 314 aa15.96■□□□□ 0.15
CLN3-222ENST00000566083 SPATA17Q96L03 361 aa15.96■□□□□ 0.15
CLN3-222ENST00000566083 SYT15Q9BQS2 421 aa15.96■□□□□ 0.15
CLN3-222ENST00000566083 AGPAT3Q9NRZ7 376 aa15.96■□□□□ 0.15
CLN3-222ENST00000566083 ZNF638Q14966 1978 aaKnown RBP15.96■□□□□ 0.15
CLN3-222ENST00000566083 TRAV19A0A0A6YYK7 116 aa15.95■□□□□ 0.14
CLN3-222ENST00000566083 TRDMT1O14717 391 aaKnown RBP15.95■□□□□ 0.14
CLN3-222ENST00000566083 POLR2DO15514 142 aaKnown RBP15.95■□□□□ 0.14
CLN3-222ENST00000566083 ZSCAN22P10073 491 aaPredicted RBP15.95■□□□□ 0.14
CLN3-222ENST00000566083 WARSP23381 471 aaKnown RBP15.95■□□□□ 0.14
CLN3-222ENST00000566083 ANXA13P27216 316 aa15.95■□□□□ 0.14
CLN3-222ENST00000566083 ME1P48163 572 aa15.95■□□□□ 0.14
CLN3-222ENST00000566083 SATB1Q01826 763 aa15.95■□□□□ 0.14
CLN3-222ENST00000566083 TNK2Q07912 1038 aa15.95■□□□□ 0.14
CLN3-222ENST00000566083 PSMD6Q15008 389 aa15.95■□□□□ 0.14
CLN3-222ENST00000566083 PON2Q15165 354 aa15.95■□□□□ 0.14
CLN3-222ENST00000566083 TXNDC8Q6A555 127 aa15.95■□□□□ 0.14
CLN3-222ENST00000566083 TXNDC11Q6PKC3 985 aa15.95■□□□□ 0.14
CLN3-222ENST00000566083 TRAPPC11Q7Z392 1133 aa15.95■□□□□ 0.14
CLN3-222ENST00000566083 OR5B17Q8NGF7 314 aa15.95■□□□□ 0.14
CLN3-222ENST00000566083 MMS19Q96T76 1030 aa15.95■□□□□ 0.14
CLN3-222ENST00000566083 DLL3Q9NYJ7 618 aa15.95■□□□□ 0.14
CLN3-222ENST00000566083 DENND4CQ5VZ89 1909 aa15.95■□□□□ 0.14
CLN3-222ENST00000566083 CCDC163A0A0D9SF12 145 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 TRIM66O15016 1216 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 TACC1O75410 805 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 F13A1P00488 732 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 DLATP10515 647 aaKnown RBP15.94■□□□□ 0.14
CLN3-222ENST00000566083 AP3M2P53677 418 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 EHHADHQ08426 723 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 NR1H3Q13133 447 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 GAS6Q14393 721 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 BMT2Q1RMZ1 405 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 FBXO43Q4G163 708 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 LMBRD2Q68DH5 695 aaPredicted RBP15.94■□□□□ 0.14
CLN3-222ENST00000566083 OSTM1Q86WC4 334 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 SCN4BQ8IWT1 228 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 C12orf56Q8IXR9 622 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 CEP57L1Q8IYX8 460 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 CPA6Q8N4T0 437 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 KIAA1958Q8N8K9 716 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 TTC8Q8TAM2 541 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 CGRRF1Q99675 332 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 SMG9Q9H0W8 520 aaKnown RBP15.94■□□□□ 0.14
CLN3-222ENST00000566083 SNX25Q9H3E2 840 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 TGFB1I1O43294 461 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 STAU1O95793 577 aaKnown RBP15.94■□□□□ 0.14
CLN3-222ENST00000566083 CKMP06732 381 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 RETP07949 1114 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 DRD1P21728 446 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 ATICP31939 592 aa15.94■□□□□ 0.14
CLN3-222ENST00000566083 HOXD13P35453 343 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms