RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 PI4K2AQ9BTU6 479 aa18.43■□□□□ 0.54
CLN3-217ENST00000565354 VRTNQ9H8Y1 702 aa18.43■□□□□ 0.54
CLN3-217ENST00000565354 RAB20Q9NX57 234 aa18.43■□□□□ 0.54
CLN3-217ENST00000565354 FBXW11Q9UKB1 542 aa18.43■□□□□ 0.54
CLN3-217ENST00000565354 NFE2L3Q9Y4A8 694 aa18.43■□□□□ 0.54
CLN3-217ENST00000565354 ANHXE9PGG2 379 aa18.42■□□□□ 0.54
CLN3-217ENST00000565354 PRRG1O14668 218 aa18.42■□□□□ 0.54
CLN3-217ENST00000565354 ASS1P00966 412 aaKnown RBP18.42■□□□□ 0.54
CLN3-217ENST00000565354 C8AP07357 584 aa18.42■□□□□ 0.54
CLN3-217ENST00000565354 GLULP15104 373 aa18.42■□□□□ 0.54
CLN3-217ENST00000565354 PCSK1P29120 753 aa18.42■□□□□ 0.54
CLN3-217ENST00000565354 MCCD1P59942 119 aaPredicted RBP18.42■□□□□ 0.54
CLN3-217ENST00000565354 NOP14P78316 857 aaKnown RBP18.42■□□□□ 0.54
CLN3-217ENST00000565354 KCNH2Q12809 1159 aa18.42■□□□□ 0.54
CLN3-217ENST00000565354 ANO6Q4KMQ2 910 aa18.42■□□□□ 0.54
CLN3-217ENST00000565354 SLC39A12Q504Y0 691 aa18.42■□□□□ 0.54
CLN3-217ENST00000565354 HSP90AA4PQ58FG1 418 aa18.42■□□□□ 0.54
CLN3-217ENST00000565354 PPM1LQ5SGD2 360 aa18.42■□□□□ 0.54
CLN3-217ENST00000565354 SPOPLQ6IQ16 392 aa18.42■□□□□ 0.54
CLN3-217ENST00000565354 LILRA6Q6PI73 481 aa18.42■□□□□ 0.54
CLN3-217ENST00000565354 PJA1Q8NG27 643 aa18.42■□□□□ 0.54
CLN3-217ENST00000565354 OR10T2Q8NGX3 314 aa18.42■□□□□ 0.54
CLN3-217ENST00000565354 ELMO3Q96BJ8 720 aa18.42■□□□□ 0.54
CLN3-217ENST00000565354 PGLYRP2Q96PD5 576 aa18.42■□□□□ 0.54
CLN3-217ENST00000565354 PIDD1Q9HB75 910 aa18.42■□□□□ 0.54
CLN3-217ENST00000565354 CYP4F11Q9HBI6 524 aa18.42■□□□□ 0.54
CLN3-217ENST00000565354 AFF4Q9UHB7 1163 aaKnown RBP18.42■□□□□ 0.54
CLN3-217ENST00000565354 PATJQ8NI35 1801 aa18.42■□□□□ 0.54
CLN3-217ENST00000565354 TACC1O75410 805 aa18.41■□□□□ 0.54
CLN3-217ENST00000565354 PRKCSHP14314 528 aaPredicted RBP18.41■□□□□ 0.54
CLN3-217ENST00000565354 WARSP23381 471 aaKnown RBP18.41■□□□□ 0.54
CLN3-217ENST00000565354 ACAT1P24752 427 aaKnown RBP18.41■□□□□ 0.54
CLN3-217ENST00000565354 MYL5Q02045 173 aa18.41■□□□□ 0.54
CLN3-217ENST00000565354 ADCY1Q08828 1119 aa18.41■□□□□ 0.54
CLN3-217ENST00000565354 RSPO4Q2I0M5 234 aaPredicted RBP18.41■□□□□ 0.54
CLN3-217ENST00000565354 GET4Q7L5D6 327 aaPredicted RBP18.41■□□□□ 0.54
CLN3-217ENST00000565354 OSTM1Q86WC4 334 aa18.41■□□□□ 0.54
CLN3-217ENST00000565354 SLC7A14Q8TBB6 771 aa18.41■□□□□ 0.54
CLN3-217ENST00000565354 TMEM209Q96SK2 561 aa18.41■□□□□ 0.54
CLN3-217ENST00000565354 ACBD6Q9BR61 282 aa18.41■□□□□ 0.54
CLN3-217ENST00000565354 MRPL45Q9BRJ2 306 aaKnown RBP18.41■□□□□ 0.54
CLN3-217ENST00000565354 FOXQ1Q9C009 403 aa18.41■□□□□ 0.54
CLN3-217ENST00000565354 ZCWPW1Q9H0M4 648 aa18.41■□□□□ 0.54
CLN3-217ENST00000565354 SMYD3Q9H7B4 428 aa18.41■□□□□ 0.54
CLN3-217ENST00000565354 ZDHHC7Q9NXF8 308 aa18.41■□□□□ 0.54
CLN3-217ENST00000565354 NUMBLQ9Y6R0 609 aa18.41■□□□□ 0.54
CLN3-217ENST00000565354 A8MXQ7 604 aa18.4■□□□□ 0.54
CLN3-217ENST00000565354 KCNJ18B7U540 433 aa18.4■□□□□ 0.54
CLN3-217ENST00000565354 PES1O00541 588 aaKnown RBP18.4■□□□□ 0.54
CLN3-217ENST00000565354 P4HA2O15460 535 aa18.4■□□□□ 0.54
CLN3-217ENST00000565354 ZMYND10O75800 440 aa18.4■□□□□ 0.54
CLN3-217ENST00000565354 ABLIM3O94929 683 aa18.4■□□□□ 0.54
CLN3-217ENST00000565354 LRG1P02750 347 aa18.4■□□□□ 0.54
CLN3-217ENST00000565354 TPM2P07951 284 aa18.4■□□□□ 0.54
CLN3-217ENST00000565354 PDGFRBP09619 1106 aa18.4■□□□□ 0.54
CLN3-217ENST00000565354 FAM163BP0C2L3 166 aa18.4■□□□□ 0.54
CLN3-217ENST00000565354 ATF2P15336 505 aa18.4■□□□□ 0.54
CLN3-217ENST00000565354 TRIM21P19474 475 aaKnown RBP18.4■□□□□ 0.54
CLN3-217ENST00000565354 GNL1P36915 607 aaPredicted RBP18.4■□□□□ 0.54
CLN3-217ENST00000565354 RAP1GAPP47736 663 aa18.4■□□□□ 0.54
CLN3-217ENST00000565354 STARD6P59095 220 aa18.4■□□□□ 0.54
CLN3-217ENST00000565354 GPR17Q13304 367 aa18.4■□□□□ 0.54
CLN3-217ENST00000565354 KCNJ12Q14500 433 aa18.4■□□□□ 0.54
CLN3-217ENST00000565354 RNF19BQ6ZMZ0 732 aa18.4■□□□□ 0.54
CLN3-217ENST00000565354 MAML2Q8IZL2 1156 aaPredicted RBP18.4■□□□□ 0.54
CLN3-217ENST00000565354 ANKRD20A12PQ8NF67 263 aa18.4■□□□□ 0.54
CLN3-217ENST00000565354 KBTBD7Q8WVZ9 684 aa18.4■□□□□ 0.54
CLN3-217ENST00000565354 SEMA4DQ92854 862 aa18.4■□□□□ 0.54
CLN3-217ENST00000565354 SHDQ96IW2 340 aa18.4■□□□□ 0.54
CLN3-217ENST00000565354 SYT15Q9BQS2 421 aa18.4■□□□□ 0.54
CLN3-217ENST00000565354 PRKD2Q9BZL6 878 aa18.4■□□□□ 0.54
CLN3-217ENST00000565354 DNAI2Q9GZS0 605 aa18.4■□□□□ 0.54
CLN3-217ENST00000565354 NIF3L1Q9GZT8 377 aa18.4■□□□□ 0.54
CLN3-217ENST00000565354 SAMSN1Q9NSI8 373 aaKnown RBP18.4■□□□□ 0.54
CLN3-217ENST00000565354 CDH9Q9ULB4 789 aa18.4■□□□□ 0.54
CLN3-217ENST00000565354 MAFFQ9ULX9 164 aa18.4■□□□□ 0.54
CLN3-217ENST00000565354 GABRDO14764 452 aa18.39■□□□□ 0.53
CLN3-217ENST00000565354 CDH8P55286 799 aa18.39■□□□□ 0.53
CLN3-217ENST00000565354 SMARCB1Q12824 385 aa18.39■□□□□ 0.53
CLN3-217ENST00000565354 NFE2Q16621 373 aaPredicted RBP18.39■□□□□ 0.53
CLN3-217ENST00000565354 MAN2A1Q16706 1144 aa18.39■□□□□ 0.53
CLN3-217ENST00000565354 UVSSAQ2YD98 709 aa18.39■□□□□ 0.53
CLN3-217ENST00000565354 ZNF528Q3MIS6 628 aa18.39■□□□□ 0.53
CLN3-217ENST00000565354 INTS6LQ5JSJ4 861 aaKnown RBP18.39■□□□□ 0.53
CLN3-217ENST00000565354 CNTNAP3BQ96NU0 1288 aa18.39■□□□□ 0.53
CLN3-217ENST00000565354 CNTNAP3Q9BZ76 1288 aa18.39■□□□□ 0.53
CLN3-217ENST00000565354 ZFP37Q9Y6Q3 630 aaPredicted RBP18.39■□□□□ 0.53
CLN3-217ENST00000565354 MTMR11A4FU01 709 aa18.38■□□□□ 0.53
CLN3-217ENST00000565354 SMTNL1A8MU46 457 aa18.38■□□□□ 0.53
CLN3-217ENST00000565354 XYLBO75191 536 aa18.38■□□□□ 0.53
CLN3-217ENST00000565354 LRRN2O75325 713 aa18.38■□□□□ 0.53
CLN3-217ENST00000565354 HNRNPA1P09651 372 aaKnown RBP eCLIP18.38■□□□□ 0.53
CLN3-217ENST00000565354 CDK11BP21127 795 aaKnown RBP18.38■□□□□ 0.53
CLN3-217ENST00000565354 EEF1GP26641 437 aaKnown RBP18.38■□□□□ 0.53
CLN3-217ENST00000565354 PSMC1P62191 440 aaKnown RBP18.38■□□□□ 0.53
CLN3-217ENST00000565354 LRMPQ12912 555 aa18.38■□□□□ 0.53
CLN3-217ENST00000565354 ZSCAN23Q3MJ62 389 aa18.38■□□□□ 0.53
CLN3-217ENST00000565354 RTL10Q7L3V2 364 aa18.38■□□□□ 0.53
CLN3-217ENST00000565354 LIMS2Q7Z4I7 341 aa18.38■□□□□ 0.53
CLN3-217ENST00000565354 IRF2BP1Q8IU81 584 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms