RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 FAM200AQ8TCP9 573 aa15.93■□□□□ 0.14
CLN3-213ENST00000565047 TRMT2BQ96GJ1 504 aaKnown RBP15.93■□□□□ 0.14
CLN3-213ENST00000565047 FNBP1Q96RU3 617 aa15.93■□□□□ 0.14
CLN3-213ENST00000565047 MRPL45Q9BRJ2 306 aaKnown RBP15.93■□□□□ 0.14
CLN3-213ENST00000565047 SCAND2PQ9GZW5 306 aaPredicted RBP15.93■□□□□ 0.14
CLN3-213ENST00000565047 SLITRK6Q9H5Y7 841 aa15.93■□□□□ 0.14
CLN3-213ENST00000565047 EXOC1Q9NV70 894 aa15.93■□□□□ 0.14
CLN3-213ENST00000565047 TRAF3IP3Q9Y228 551 aa15.93■□□□□ 0.14
CLN3-213ENST00000565047 CACNA1IQ9P0X4 2223 aa15.92■□□□□ 0.14
CLN3-213ENST00000565047 DENND4CQ5VZ89 1909 aa15.92■□□□□ 0.14
CLN3-213ENST00000565047 LRRIQ3A6PVS8 624 aaPredicted RBP15.92■□□□□ 0.14
CLN3-213ENST00000565047 EXOC3O60645 756 aa15.92■□□□□ 0.14
CLN3-213ENST00000565047 VNN1O95497 513 aa15.92■□□□□ 0.14
CLN3-213ENST00000565047 SP9P0CG40 484 aa15.92■□□□□ 0.14
CLN3-213ENST00000565047 RFX1P22670 979 aa15.92■□□□□ 0.14
CLN3-213ENST00000565047 MAGEA9P43362 315 aa15.92■□□□□ 0.14
CLN3-213ENST00000565047 MYL6P60660 151 aa15.92■□□□□ 0.14
CLN3-213ENST00000565047 DLG4P78352 724 aa15.92■□□□□ 0.14
CLN3-213ENST00000565047 C1orf220Q5T0J3 134 aa15.92■□□□□ 0.14
CLN3-213ENST00000565047 MAMSTRQ6ZN01 415 aa15.92■□□□□ 0.14
CLN3-213ENST00000565047 KRBA2Q6ZNG9 492 aa15.92■□□□□ 0.14
CLN3-213ENST00000565047 NELL1Q92832 810 aa15.92■□□□□ 0.14
CLN3-213ENST00000565047 SYT15Q9BQS2 421 aa15.92■□□□□ 0.14
CLN3-213ENST00000565047 SMG9Q9H0W8 520 aaKnown RBP15.92■□□□□ 0.14
CLN3-213ENST00000565047 GDPD2Q9HCC8 539 aa15.92■□□□□ 0.14
CLN3-213ENST00000565047 TICRRQ7Z2Z1 1910 aa15.92■□□□□ 0.14
CLN3-213ENST00000565047 PATJQ8NI35 1801 aa15.91■□□□□ 0.14
CLN3-213ENST00000565047 F5P12259 2224 aa15.91■□□□□ 0.14
CLN3-213ENST00000565047 OBSL1O75147 1896 aa15.91■□□□□ 0.14
CLN3-213ENST00000565047 KIF26AQ9ULI4 1882 aaPredicted RBP15.91■□□□□ 0.14
CLN3-213ENST00000565047 SLC38A8A6NNN8 435 aa15.91■□□□□ 0.14
CLN3-213ENST00000565047 MAN2B1O00754 1011 aa15.91■□□□□ 0.14
CLN3-213ENST00000565047 PDGFRBP09619 1106 aa15.91■□□□□ 0.14
CLN3-213ENST00000565047 CSH1P0DML2 217 aa15.91■□□□□ 0.14
CLN3-213ENST00000565047 CSH2P0DML3 217 aa15.91■□□□□ 0.14
CLN3-213ENST00000565047 ATICP31939 592 aa15.91■□□□□ 0.14
CLN3-213ENST00000565047 PSMC1P62191 440 aaKnown RBP15.91■□□□□ 0.14
CLN3-213ENST00000565047 RPL10AP62906 217 aaKnown RBP15.91■□□□□ 0.14
CLN3-213ENST00000565047 NFIL3Q16649 462 aa15.91■□□□□ 0.14
CLN3-213ENST00000565047 WDR72Q3MJ13 1102 aa15.91■□□□□ 0.14
CLN3-213ENST00000565047 ARHGAP15Q53QZ3 475 aa15.91■□□□□ 0.14
CLN3-213ENST00000565047 MON1AQ86VX9 555 aa15.91■□□□□ 0.14
CLN3-213ENST00000565047 CMTM8Q8IZV2 173 aa15.91■□□□□ 0.14
CLN3-213ENST00000565047 MYCBPAPQ8TBZ2 947 aa15.91■□□□□ 0.14
CLN3-213ENST00000565047 USP13Q92995 863 aaPredicted RBP15.91■□□□□ 0.14
CLN3-213ENST00000565047 MYLPFQ96A32 169 aa15.91■□□□□ 0.14
CLN3-213ENST00000565047 PCED1BQ96HM7 432 aa15.91■□□□□ 0.14
CLN3-213ENST00000565047 ZFYVE19Q96K21 471 aa15.91■□□□□ 0.14
CLN3-213ENST00000565047 BCO2Q9BYV7 579 aa15.91■□□□□ 0.14
CLN3-213ENST00000565047 TMEM30AQ9NV96 361 aa15.91■□□□□ 0.14
CLN3-213ENST00000565047 ZMYM5Q9UJ78 669 aa15.91■□□□□ 0.14
CLN3-213ENST00000565047 CCL26Q9Y258 94 aa15.91■□□□□ 0.14
CLN3-213ENST00000565047 ATP6V1DQ9Y5K8 247 aa15.91■□□□□ 0.14
CLN3-213ENST00000565047 PIAS3Q9Y6X2 628 aa15.91■□□□□ 0.14
CLN3-213ENST00000565047 MIA3Q5JRA6 1907 aa15.91■□□□□ 0.14
CLN3-213ENST00000565047 ZNF202O95125 648 aa15.9■□□□□ 0.14
CLN3-213ENST00000565047 NR3C1P04150 777 aa15.9■□□□□ 0.14
CLN3-213ENST00000565047 CHRNB1P11230 501 aa15.9■□□□□ 0.14
CLN3-213ENST00000565047 DDX6P26196 483 aaKnown RBP eCLIP15.9■□□□□ 0.14
CLN3-213ENST00000565047 GNL1P36915 607 aaPredicted RBP15.9■□□□□ 0.14
CLN3-213ENST00000565047 ZNF528Q3MIS6 628 aa15.9■□□□□ 0.14
CLN3-213ENST00000565047 ARHGAP29Q52LW3 1261 aa15.9■□□□□ 0.14
CLN3-213ENST00000565047 TXNDC8Q6A555 127 aa15.9■□□□□ 0.14
CLN3-213ENST00000565047 VSTM1Q6UX27 236 aa15.9■□□□□ 0.14
CLN3-213ENST00000565047 SPATA2LQ8IUW3 424 aaPredicted RBP15.9■□□□□ 0.14
CLN3-213ENST00000565047 CELF5Q8N6W0 485 aaKnown RBP15.9■□□□□ 0.14
CLN3-213ENST00000565047 FSIP1Q8NA03 581 aa15.9■□□□□ 0.14
CLN3-213ENST00000565047 BPIFB1Q8TDL5 484 aa15.9■□□□□ 0.14
CLN3-213ENST00000565047 FAM3CQ92520 227 aa15.9■□□□□ 0.14
CLN3-213ENST00000565047 CHFRQ96EP1 664 aa15.9■□□□□ 0.14
CLN3-213ENST00000565047 SPATA17Q96L03 361 aa15.9■□□□□ 0.14
CLN3-213ENST00000565047 CEP295NLQ96MC4 621 aa15.9■□□□□ 0.14
CLN3-213ENST00000565047 MMS19Q96T76 1030 aa15.9■□□□□ 0.14
CLN3-213ENST00000565047 FAM83CQ9BQN1 747 aa15.9■□□□□ 0.14
CLN3-213ENST00000565047 FBXO4Q9UKT5 387 aa15.9■□□□□ 0.14
CLN3-213ENST00000565047 MRPS17Q9Y2R5 130 aaKnown RBP15.9■□□□□ 0.14
CLN3-213ENST00000565047 PTPRDP23468 1912 aa15.9■□□□□ 0.14
CLN3-213ENST00000565047 FANCMQ8IYD8 2048 aa15.89■□□□□ 0.13
CLN3-213ENST00000565047 TDGF1P13385 188 aa15.89■□□□□ 0.13
CLN3-213ENST00000565047 SOX9P48436 509 aa15.89■□□□□ 0.13
CLN3-213ENST00000565047 AP3M2P53677 418 aa15.89■□□□□ 0.13
CLN3-213ENST00000565047 CACNA2D1P54289 1103 aa15.89■□□□□ 0.13
CLN3-213ENST00000565047 GAS6Q14393 721 aa15.89■□□□□ 0.13
CLN3-213ENST00000565047 KCNB1Q14721 858 aa15.89■□□□□ 0.13
CLN3-213ENST00000565047 ZACNQ401N2 412 aa15.89■□□□□ 0.13
CLN3-213ENST00000565047 ZCWPW2Q504Y3 356 aa15.89■□□□□ 0.13
CLN3-213ENST00000565047 TXNDC11Q6PKC3 985 aa15.89■□□□□ 0.13
CLN3-213ENST00000565047 C4orf50Q6ZRC1 276 aa15.89■□□□□ 0.13
CLN3-213ENST00000565047 FMR1NBQ8N0W7 255 aaPredicted RBP15.89■□□□□ 0.13
CLN3-213ENST00000565047 MAB21L3Q8N8X9 362 aa15.89■□□□□ 0.13
CLN3-213ENST00000565047 ENGASEQ8NFI3 743 aa15.89■□□□□ 0.13
CLN3-213ENST00000565047 TMC2Q8TDI7 906 aa15.89■□□□□ 0.13
CLN3-213ENST00000565047 NKD2Q969F2 451 aaPredicted RBP15.89■□□□□ 0.13
CLN3-213ENST00000565047 ELMO3Q96BJ8 720 aa15.89■□□□□ 0.13
CLN3-213ENST00000565047 SLC22A12Q96S37 553 aa15.89■□□□□ 0.13
CLN3-213ENST00000565047 SDCBP2Q9H190 292 aa15.89■□□□□ 0.13
CLN3-213ENST00000565047 CHRDQ9H2X0 955 aa15.89■□□□□ 0.13
CLN3-213ENST00000565047 DPEP3Q9H4B8 488 aa15.89■□□□□ 0.13
CLN3-213ENST00000565047 PRMT8Q9NR22 394 aaPredicted RBP15.89■□□□□ 0.13
CLN3-213ENST00000565047 GTSE1Q9NYZ3 720 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms