RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 MYO9BQ13459 2157 aa21.89■■□□□ 1.1
CLN3-212ENST00000564574 MTMR11A4FU01 709 aa21.89■■□□□ 1.09
CLN3-212ENST00000564574 RFXAPO00287 272 aa21.89■■□□□ 1.09
CLN3-212ENST00000564574 O00370 1275 aa21.89■■□□□ 1.09
CLN3-212ENST00000564574 ADAM12O43184 909 aa21.89■■□□□ 1.09
CLN3-212ENST00000564574 BRD2P25440 801 aaKnown RBP21.89■■□□□ 1.09
CLN3-212ENST00000564574 KLRC2P26717 231 aa21.89■■□□□ 1.09
CLN3-212ENST00000564574 CDK17Q00537 523 aa21.89■■□□□ 1.09
CLN3-212ENST00000564574 CYP27A1Q02318 531 aa21.89■■□□□ 1.09
CLN3-212ENST00000564574 GOLGA8FQ08AF8 430 aa21.89■■□□□ 1.09
CLN3-212ENST00000564574 GOLGA8DPQ0D2H9 430 aa21.89■■□□□ 1.09
CLN3-212ENST00000564574 CCDC173Q0VFZ6 552 aa21.89■■□□□ 1.09
CLN3-212ENST00000564574 CFAP221Q4G0U5 840 aa21.89■■□□□ 1.09
CLN3-212ENST00000564574 PPP1R26Q5T8A7 1209 aaPredicted RBP21.89■■□□□ 1.09
CLN3-212ENST00000564574 LCLAT1Q6UWP7 414 aa21.89■■□□□ 1.09
CLN3-212ENST00000564574 NOP9Q86U38 636 aaKnown RBP21.89■■□□□ 1.09
CLN3-212ENST00000564574 TFAP2BQ92481 460 aa21.89■■□□□ 1.09
CLN3-212ENST00000564574 MED10Q9BTT4 135 aa21.89■■□□□ 1.09
CLN3-212ENST00000564574 B3GNT5Q9BYG0 378 aa21.89■■□□□ 1.09
CLN3-212ENST00000564574 ACP6Q9NPH0 428 aa21.89■■□□□ 1.09
CLN3-212ENST00000564574 NOCTQ9UK39 431 aaKnown RBP21.89■■□□□ 1.09
CLN3-212ENST00000564574 PCDHGC3Q9UN70 934 aa21.89■■□□□ 1.09
CLN3-212ENST00000564574 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.89■■□□□ 1.09
CLN3-212ENST00000564574 CSPG5O95196 566 aa21.88■■□□□ 1.09
CLN3-212ENST00000564574 CCDC130P13994 396 aa21.88■■□□□ 1.09
CLN3-212ENST00000564574 CDR2Q01850 454 aa21.88■■□□□ 1.09
CLN3-212ENST00000564574 HGSNATQ68CP4 663 aa21.88■■□□□ 1.09
CLN3-212ENST00000564574 RNF19BQ6ZMZ0 732 aa21.88■■□□□ 1.09
CLN3-212ENST00000564574 FAM35AQ86V20 835 aa21.88■■□□□ 1.09
CLN3-212ENST00000564574 GLYCTKQ8IVS8 523 aa21.88■■□□□ 1.09
CLN3-212ENST00000564574 FUKQ8N0W3 1084 aa21.88■■□□□ 1.09
CLN3-212ENST00000564574 SLC2A14Q8TDB8 520 aa21.88■■□□□ 1.09
CLN3-212ENST00000564574 DDX1Q92499 740 aaKnown RBP21.88■■□□□ 1.09
CLN3-212ENST00000564574 CDCA3Q99618 268 aaPredicted RBP21.88■■□□□ 1.09
CLN3-212ENST00000564574 LPIN3Q9BQK8 851 aa21.88■■□□□ 1.09
CLN3-212ENST00000564574 HAUS4Q9H6D7 363 aa21.88■■□□□ 1.09
CLN3-212ENST00000564574 HESX1Q9UBX0 185 aa21.88■■□□□ 1.09
CLN3-212ENST00000564574 TSPAN16Q9UKR8 245 aa21.88■■□□□ 1.09
CLN3-212ENST00000564574 PCDHGC5Q9Y5F6 944 aa21.88■■□□□ 1.09
CLN3-212ENST00000564574 ATF2P15336 505 aa21.87■■□□□ 1.09
CLN3-212ENST00000564574 ANXA13P27216 316 aa21.87■■□□□ 1.09
CLN3-212ENST00000564574 MAGEA11P43364 429 aa21.87■■□□□ 1.09
CLN3-212ENST00000564574 CCDC142Q17RM4 750 aa21.87■■□□□ 1.09
CLN3-212ENST00000564574 GOLGA7BQ2TAP0 167 aa21.87■■□□□ 1.09
CLN3-212ENST00000564574 TDRD12Q587J7 1177 aaKnown RBP21.87■■□□□ 1.09
CLN3-212ENST00000564574 WDR59Q6PJI9 974 aa21.87■■□□□ 1.09
CLN3-212ENST00000564574 VSTM1Q6UX27 236 aa21.87■■□□□ 1.09
CLN3-212ENST00000564574 CCDC186Q7Z3E2 898 aa21.87■■□□□ 1.09
CLN3-212ENST00000564574 ANKRD52Q8NB46 1076 aa21.87■■□□□ 1.09
CLN3-212ENST00000564574 SMARCD1Q96GM5 515 aa21.87■■□□□ 1.09
CLN3-212ENST00000564574 AGPAT1Q99943 283 aa21.87■■□□□ 1.09
CLN3-212ENST00000564574 ZSWIM1Q9BR11 485 aa21.87■■□□□ 1.09
CLN3-212ENST00000564574 PRDM12Q9H4Q4 367 aa21.87■■□□□ 1.09
CLN3-212ENST00000564574 CLASP2O75122 1294 aaKnown RBP21.86■■□□□ 1.09
CLN3-212ENST00000564574 GLUD1P00367 558 aa21.86■■□□□ 1.09
CLN3-212ENST00000564574 CALCAP01258 141 aa21.86■■□□□ 1.09
CLN3-212ENST00000564574 POU3F3P20264 500 aaPredicted RBP21.86■■□□□ 1.09
CLN3-212ENST00000564574 FECHP22830 423 aa21.86■■□□□ 1.09
CLN3-212ENST00000564574 ADORA2BP29275 332 aa21.86■■□□□ 1.09
CLN3-212ENST00000564574 BCAT1P54687 386 aa21.86■■□□□ 1.09
CLN3-212ENST00000564574 SLC8A3P57103 927 aa21.86■■□□□ 1.09
CLN3-212ENST00000564574 GRIN2CQ14957 1233 aa21.86■■□□□ 1.09
CLN3-212ENST00000564574 LILRA6Q6PI73 481 aa21.86■■□□□ 1.09
CLN3-212ENST00000564574 TRIM72Q6ZMU5 477 aa21.86■■□□□ 1.09
CLN3-212ENST00000564574 PAQR9Q6ZVX9 377 aa21.86■■□□□ 1.09
CLN3-212ENST00000564574 VPS36Q86VN1 386 aa21.86■■□□□ 1.09
CLN3-212ENST00000564574 GPIHBP1Q8IV16 184 aa21.86■■□□□ 1.09
CLN3-212ENST00000564574 SLC20A1Q8WUM9 679 aa21.86■■□□□ 1.09
CLN3-212ENST00000564574 PGLYRP2Q96PD5 576 aa21.86■■□□□ 1.09
CLN3-212ENST00000564574 LHX5Q9H2C1 402 aa21.86■■□□□ 1.09
CLN3-212ENST00000564574 PDCL3Q9H2J4 239 aa21.86■■□□□ 1.09
CLN3-212ENST00000564574 NSUN3Q9H649 340 aaKnown RBP21.86■■□□□ 1.09
CLN3-212ENST00000564574 ABI2Q9NYB9 513 aaPredicted RBP21.86■■□□□ 1.09
CLN3-212ENST00000564574 PATJQ8NI35 1801 aa21.85■■□□□ 1.09
CLN3-212ENST00000564574 SSU72P8A0A1W2PR75 194 aa21.85■■□□□ 1.09
CLN3-212ENST00000564574 TGM5O43548 720 aa21.85■■□□□ 1.09
CLN3-212ENST00000564574 MICAL2O94851 1124 aa21.85■■□□□ 1.09
CLN3-212ENST00000564574 FAM200BP0CF97 657 aa21.85■■□□□ 1.09
CLN3-212ENST00000564574 SETSIPP0DME0 302 aa21.85■■□□□ 1.09
CLN3-212ENST00000564574 SKILP12757 684 aa21.85■■□□□ 1.09
CLN3-212ENST00000564574 TNFAIP3P21580 790 aa21.85■■□□□ 1.09
CLN3-212ENST00000564574 ELF1P32519 619 aa21.85■■□□□ 1.09
CLN3-212ENST00000564574 TUFMP49411 452 aaKnown RBP21.85■■□□□ 1.09
CLN3-212ENST00000564574 CLCN4P51793 760 aa21.85■■□□□ 1.09
CLN3-212ENST00000564574 FMO1Q01740 532 aa21.85■■□□□ 1.09
CLN3-212ENST00000564574 ADCY1Q08828 1119 aa21.85■■□□□ 1.09
CLN3-212ENST00000564574 BST2Q10589 180 aaKnown RBP21.85■■□□□ 1.09
CLN3-212ENST00000564574 MAPK8IP2Q13387 824 aaPredicted RBP21.85■■□□□ 1.09
CLN3-212ENST00000564574 DUSP6Q16828 381 aa21.85■■□□□ 1.09
CLN3-212ENST00000564574 TAF3Q5VWG9 929 aa21.85■■□□□ 1.09
CLN3-212ENST00000564574 RTL10Q7L3V2 364 aa21.85■■□□□ 1.09
CLN3-212ENST00000564574 PALB2Q86YC2 1186 aa21.85■■□□□ 1.09
CLN3-212ENST00000564574 TCEAL8Q8IYN2 117 aa21.85■■□□□ 1.09
CLN3-212ENST00000564574 HDAC7Q8WUI4 952 aa21.85■■□□□ 1.09
CLN3-212ENST00000564574 PPP1R9BQ96SB3 815 aa21.85■■□□□ 1.09
CLN3-212ENST00000564574 SYT11Q9BT88 431 aa21.85■■□□□ 1.09
CLN3-212ENST00000564574 DUSP16Q9BY84 665 aa21.85■■□□□ 1.09
CLN3-212ENST00000564574 ZNF518BQ9C0D4 1074 aa21.85■■□□□ 1.09
CLN3-212ENST00000564574 TLE6Q9H808 572 aa21.85■■□□□ 1.09
CLN3-212ENST00000564574 KRT82Q9NSB4 513 aa21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms