RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 DNAJC9Q8WXX5 260 aa13.86□□□□□ -0.19
CLN3-210ENST00000563874 NKD2Q969F2 451 aaPredicted RBP13.86□□□□□ -0.19
CLN3-210ENST00000563874 TTC17Q96AE7 1141 aa13.86□□□□□ -0.19
CLN3-210ENST00000563874 FARP1Q9Y4F1 1045 aaPredicted RBP13.86□□□□□ -0.19
CLN3-210ENST00000563874 A6NHS1 94 aa13.86□□□□□ -0.19
CLN3-210ENST00000563874 TTLL13PA6NNM8 815 aa13.86□□□□□ -0.19
CLN3-210ENST00000563874 WDR46O15213 610 aaKnown RBP13.86□□□□□ -0.19
CLN3-210ENST00000563874 ONECUT3O60422 494 aaPredicted RBP13.86□□□□□ -0.19
CLN3-210ENST00000563874 HAUS5O94927 633 aa13.86□□□□□ -0.19
CLN3-210ENST00000563874 RPL22P35268 128 aaKnown RBP13.86□□□□□ -0.19
CLN3-210ENST00000563874 ARL4CP56559 192 aa13.86□□□□□ -0.19
CLN3-210ENST00000563874 BASP1P80723 227 aaKnown RBP13.86□□□□□ -0.19
CLN3-210ENST00000563874 GRIK3Q13003 919 aa13.86□□□□□ -0.19
CLN3-210ENST00000563874 EMC2Q15006 297 aa13.86□□□□□ -0.19
CLN3-210ENST00000563874 RCN1Q15293 331 aa13.86□□□□□ -0.19
CLN3-210ENST00000563874 WASHC2DQ5SRD0 308 aa13.86□□□□□ -0.19
CLN3-210ENST00000563874 VSIG10LQ86VR7 867 aa13.86□□□□□ -0.19
CLN3-210ENST00000563874 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.86□□□□□ -0.19
CLN3-210ENST00000563874 ENDOVQ8N8Q3 282 aaKnown RBP13.86□□□□□ -0.19
CLN3-210ENST00000563874 SLC35B2Q8TB61 432 aa13.86□□□□□ -0.19
CLN3-210ENST00000563874 FAM111AQ96PZ2 611 aa13.86□□□□□ -0.19
CLN3-210ENST00000563874 TRAFD1O14545 582 aaPredicted RBP13.85□□□□□ -0.19
CLN3-210ENST00000563874 MAP3K13O43283 966 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 KRT36O76013 467 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 PSAPP07602 524 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 KCNA2P16389 499 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 ATP6V1C1P21283 382 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 IL1R2P27930 398 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 PHBP35232 272 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 RFC1P35251 1148 aaPredicted RBP13.85□□□□□ -0.19
CLN3-210ENST00000563874 TNFSF9P41273 254 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 ACTR2P61160 394 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 MTMR2Q13614 643 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 KPNB1Q14974 876 aaKnown RBP13.85□□□□□ -0.19
CLN3-210ENST00000563874 IGDCC3Q8IVU1 814 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 UNC45BQ8IWX7 931 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 PPIL6Q8IXY8 311 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 SCYL3Q8IZE3 742 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 EMC1Q8N766 993 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 FAM71DQ8N9W8 422 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 RSAD2Q8WXG1 361 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 ATG4CQ96DT6 458 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 TSSK1BQ9BXA7 367 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 JPH1Q9HDC5 661 aaPredicted RBP13.85□□□□□ -0.19
CLN3-210ENST00000563874 RNF146Q9NTX7 359 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 ARMCX1Q9P291 453 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 PCSK1NQ9UHG2 260 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 SPDYE5A6NIY4 337 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 ATP4AP20648 1035 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 CPA2P48052 419 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 ARFIP2P53365 341 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 ADGRD1Q6QNK2 874 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 ARMCX6Q7L4S7 300 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 ZBTB33Q86T24 672 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 WDTC1Q8N5D0 677 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 BANPQ8N9N5 519 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 DEPTORQ8TB45 409 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 MZB1Q8WU39 189 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 DCAKDQ8WVC6 231 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 TFAP2BQ92481 460 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 TRIM55Q9BYV6 548 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 IMPG2Q9BZV3 1241 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 ACSS3Q9H6R3 686 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 NMRK1Q9NWW6 199 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 XPO7Q9UIA9 1087 aaKnown RBP13.85□□□□□ -0.19
CLN3-210ENST00000563874 SNCAIPQ9Y6H5 919 aa13.85□□□□□ -0.19
CLN3-210ENST00000563874 GYG2O15488 501 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 LPXNO60711 386 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 ITGBL1O95965 494 aaPredicted RBP13.84□□□□□ -0.19
CLN3-210ENST00000563874 CALB1P05937 261 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 BGNP21810 368 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 TBXAS1P24557 533 aaPredicted RBP13.84□□□□□ -0.19
CLN3-210ENST00000563874 PSMA2P25787 234 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 RXRBP28702 533 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 CCND2P30279 289 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 HIRAP54198 1017 aaPredicted RBP13.84□□□□□ -0.19
CLN3-210ENST00000563874 MYL6P60660 151 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 STYK1Q6J9G0 422 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 LMNTD2Q8IXW0 634 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 NAT8LQ8N9F0 302 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 JOSD2Q8TAC2 188 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 ZNF483Q8TF39 744 aaPredicted RBP13.84□□□□□ -0.19
CLN3-210ENST00000563874 SERAC1Q96JX3 654 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 CGRRF1Q99675 332 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 SYT15Q9BQS2 421 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 TMEM120AQ9BXJ8 343 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 MTMR12Q9C0I1 747 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 RPAP3Q9H6T3 665 aaPredicted RBP13.84□□□□□ -0.19
CLN3-210ENST00000563874 DCLRE1BQ9H816 532 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 MYH9P35579 1960 aaKnown RBP13.84□□□□□ -0.19
CLN3-210ENST00000563874 TCRBV5S1A1TA0A578 114 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 LIN7AO14910 233 aaPredicted RBP13.84□□□□□ -0.19
CLN3-210ENST00000563874 MT-ND3P03897 115 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 GHRHRQ02643 423 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 TAF5Q15542 800 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 ACSBG2Q5FVE4 666 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 ARFGAP1Q8N6T3 406 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 UCMAQ8WVF2 138 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 BTBD10Q9BSF8 475 aa13.84□□□□□ -0.19
CLN3-210ENST00000563874 ZNF277Q9NRM2 450 aaPredicted RBP13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms