RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 TUT1Q9H6E5 874 aaKnown RBP13.96□□□□□ -0.17
CLK3-206ENST00000562078 TAS2R1Q9NYW7 299 aa13.96□□□□□ -0.17
CLK3-206ENST00000562078 NENFQ9UMX5 172 aa13.96□□□□□ -0.17
CLK3-206ENST00000562078 PCDHB13Q9Y5F0 798 aa13.96□□□□□ -0.17
CLK3-206ENST00000562078 RASA4BC9J798 803 aa13.96□□□□□ -0.18
CLK3-206ENST00000562078 TP73O15350 636 aa13.96□□□□□ -0.18
CLK3-206ENST00000562078 SLC16A3O15427 465 aaKnown RBP13.96□□□□□ -0.18
CLK3-206ENST00000562078 RASA4O43374 803 aa13.96□□□□□ -0.18
CLK3-206ENST00000562078 FGFR1P11362 822 aa13.96□□□□□ -0.18
CLK3-206ENST00000562078 ARFIP2P53365 341 aa13.96□□□□□ -0.18
CLK3-206ENST00000562078 PPATQ06203 517 aa13.96□□□□□ -0.18
CLK3-206ENST00000562078 KLHDC10Q6PID8 442 aa13.96□□□□□ -0.18
CLK3-206ENST00000562078 GADL1Q6ZQY3 521 aa13.96□□□□□ -0.18
CLK3-206ENST00000562078 RNF207Q6ZRF8 634 aa13.96□□□□□ -0.18
CLK3-206ENST00000562078 RSPH1Q8WYR4 309 aa13.96□□□□□ -0.18
CLK3-206ENST00000562078 SRPK1Q96SB4 655 aaKnown RBP13.96□□□□□ -0.18
CLK3-206ENST00000562078 KCND2Q9NZV8 630 aa13.96□□□□□ -0.18
CLK3-206ENST00000562078 SEL1LQ9UBV2 794 aa13.96□□□□□ -0.18
CLK3-206ENST00000562078 PCYOX1Q9UHG3 505 aa13.96□□□□□ -0.18
CLK3-206ENST00000562078 RIPK3Q9Y572 518 aa13.96□□□□□ -0.18
CLK3-206ENST00000562078 LOC285556D6RIA3 1793 aa13.95□□□□□ -0.18
CLK3-206ENST00000562078 TCRBV7S2A1N4TA0A589 114 aa13.95□□□□□ -0.18
CLK3-206ENST00000562078 C2CD2LO14523 706 aa13.95□□□□□ -0.18
CLK3-206ENST00000562078 HNRNPCL1O60812 293 aaKnown RBP13.95□□□□□ -0.18
CLK3-206ENST00000562078 STK10O94804 968 aaKnown RBP13.95□□□□□ -0.18
CLK3-206ENST00000562078 FDX1P10109 184 aa13.95□□□□□ -0.18
CLK3-206ENST00000562078 PORP16435 677 aaPredicted RBP13.95□□□□□ -0.18
CLK3-206ENST00000562078 CHRNB2P17787 502 aa13.95□□□□□ -0.18
CLK3-206ENST00000562078 YY1P25490 414 aa13.95□□□□□ -0.18
CLK3-206ENST00000562078 SPDYAQ5MJ70 313 aa13.95□□□□□ -0.18
CLK3-206ENST00000562078 CATSPERGQ6ZRH7 1159 aa13.95□□□□□ -0.18
CLK3-206ENST00000562078 CCDC105Q8IYK2 499 aa13.95□□□□□ -0.18
CLK3-206ENST00000562078 DAW1Q8N136 415 aa13.95□□□□□ -0.18
CLK3-206ENST00000562078 SLC35C1Q96A29 364 aa13.95□□□□□ -0.18
CLK3-206ENST00000562078 PWWP2AQ96N64 755 aa13.95□□□□□ -0.18
CLK3-206ENST00000562078 RNF146Q9NTX7 359 aa13.95□□□□□ -0.18
CLK3-206ENST00000562078 NDE1Q9NXR1 346 aa13.95□□□□□ -0.18
CLK3-206ENST00000562078 KANSL3Q9P2N6 904 aa13.95□□□□□ -0.18
CLK3-206ENST00000562078 LSM1O15116 133 aaKnown RBP13.95□□□□□ -0.18
CLK3-206ENST00000562078 P4HBP07237 508 aaKnown RBP13.95□□□□□ -0.18
CLK3-206ENST00000562078 COL6A2P12110 1019 aa13.95□□□□□ -0.18
CLK3-206ENST00000562078 UCHL3P15374 230 aa13.95□□□□□ -0.18
CLK3-206ENST00000562078 PCSK6P29122 969 aa13.95□□□□□ -0.18
CLK3-206ENST00000562078 MARCKSL1P49006 195 aa13.95□□□□□ -0.18
CLK3-206ENST00000562078 NPEPPSP55786 919 aa13.95□□□□□ -0.18
CLK3-206ENST00000562078 TMED2Q15363 201 aa13.95□□□□□ -0.18
CLK3-206ENST00000562078 PADI6Q6TGC4 694 aa13.95□□□□□ -0.18
CLK3-206ENST00000562078 ZNF720Q7Z2F6 126 aa13.95□□□□□ -0.18
CLK3-206ENST00000562078 TRMT1LQ7Z2T5 733 aaKnown RBP13.95□□□□□ -0.18
CLK3-206ENST00000562078 FNDC8Q8TC99 324 aa13.95□□□□□ -0.18
CLK3-206ENST00000562078 FAM161BQ96MY7 647 aa13.95□□□□□ -0.18
CLK3-206ENST00000562078 SH2D3AQ9BRG2 576 aa13.95□□□□□ -0.18
CLK3-206ENST00000562078 PDCD2LQ9BRP1 358 aa13.95□□□□□ -0.18
CLK3-206ENST00000562078 STK33Q9BYT3 514 aa13.95□□□□□ -0.18
CLK3-206ENST00000562078 CYLDQ9NQC7 956 aa13.95□□□□□ -0.18
CLK3-206ENST00000562078 PXMP2Q9NR77 195 aa13.95□□□□□ -0.18
CLK3-206ENST00000562078 AJAP1Q9UKB5 411 aaPredicted RBP13.95□□□□□ -0.18
CLK3-206ENST00000562078 TESPA1A2RU30 521 aaPredicted RBP13.94□□□□□ -0.18
CLK3-206ENST00000562078 BTBD19C9JJ37 291 aa13.94□□□□□ -0.18
CLK3-206ENST00000562078 HAUS5O94927 633 aa13.94□□□□□ -0.18
CLK3-206ENST00000562078 ZWINTO95229 277 aa13.94□□□□□ -0.18
CLK3-206ENST00000562078 TTC4O95801 387 aa13.94□□□□□ -0.18
CLK3-206ENST00000562078 DSG3P32926 999 aa13.94□□□□□ -0.18
CLK3-206ENST00000562078 CYP2J2P51589 502 aa13.94□□□□□ -0.18
CLK3-206ENST00000562078 CCR3P51677 355 aa13.94□□□□□ -0.18
CLK3-206ENST00000562078 OVGP1Q12889 678 aa13.94□□□□□ -0.18
CLK3-206ENST00000562078 CALCOCO2Q13137 446 aa13.94□□□□□ -0.18
CLK3-206ENST00000562078 ITGA9Q13797 1035 aa13.94□□□□□ -0.18
CLK3-206ENST00000562078 GRM2Q14416 872 aa13.94□□□□□ -0.18
CLK3-206ENST00000562078 MAP7D1Q3KQU3 841 aa13.94□□□□□ -0.18
CLK3-206ENST00000562078 FAM186BQ8IYM0 893 aa13.94□□□□□ -0.18
CLK3-206ENST00000562078 RFWD2Q8NHY2 731 aa13.94□□□□□ -0.18
CLK3-206ENST00000562078 RIN3Q8TB24 985 aa13.94□□□□□ -0.18
CLK3-206ENST00000562078 DHRS1Q96LJ7 313 aa13.94□□□□□ -0.18
CLK3-206ENST00000562078 PPM1HQ9ULR3 514 aa13.94□□□□□ -0.18
CLK3-206ENST00000562078 DIS3Q9Y2L1 958 aaKnown RBP13.94□□□□□ -0.18
CLK3-206ENST00000562078 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.94□□□□□ -0.18
CLK3-206ENST00000562078 UBE4BO95155 1302 aa13.94□□□□□ -0.18
CLK3-206ENST00000562078 TMEM150BA6NC51 233 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 PDE5AO76074 875 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 GAS8O95995 478 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 NAT1P18440 290 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 PON1P27169 355 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 PGM1P36871 562 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 CPA2P48052 419 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 TBL3Q12788 808 aaKnown RBP13.93□□□□□ -0.18
CLK3-206ENST00000562078 MED21Q13503 144 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 UGCGQ16739 394 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 TREML2Q5T2D2 321 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 ARHGEF16Q5VV41 709 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 SNRNP48Q6IEG0 339 aaKnown RBP13.93□□□□□ -0.18
CLK3-206ENST00000562078 C1orf228Q6PIY5 440 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 STXBP4Q6ZWJ1 553 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 NANOGNBQ7Z5D8 188 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 RASSF3Q86WH2 238 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 PRPF31Q8WWY3 499 aaKnown RBP13.93□□□□□ -0.18
CLK3-206ENST00000562078 KRT35Q92764 455 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 NSL1Q96IY1 281 aa13.93□□□□□ -0.18
CLK3-206ENST00000562078 PRICKLE1Q96MT3 831 aaPredicted RBP13.93□□□□□ -0.18
CLK3-206ENST00000562078 FBXO6Q9NRD1 293 aaPredicted RBP13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 1242.8 ms