RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 LTV1Q96GA3 475 aaPredicted RBP2.83□□□□□ -1.96
SPG11-223ENST00000560858 EXOC2Q96KP1 924 aa2.83□□□□□ -1.96
SPG11-223ENST00000560858 TCEANC2Q96MN5 208 aa2.83□□□□□ -1.96
SPG11-223ENST00000560858 UROC1Q96N76 676 aa2.83□□□□□ -1.96
SPG11-223ENST00000560858 ZNF830Q96NB3 372 aaPredicted RBP2.83□□□□□ -1.96
SPG11-223ENST00000560858 NEK1Q96PY6 1258 aa2.83□□□□□ -1.96
SPG11-223ENST00000560858 CDC5LQ99459 802 aaKnown RBP2.83□□□□□ -1.96
SPG11-223ENST00000560858 FEZ1Q99689 392 aa2.83□□□□□ -1.96
SPG11-223ENST00000560858 BPIFA3Q9BQP9 254 aa2.83□□□□□ -1.96
SPG11-223ENST00000560858 AIFM2Q9BRQ8 373 aa2.83□□□□□ -1.96
SPG11-223ENST00000560858 GTPBP4Q9BZE4 634 aaKnown RBP2.83□□□□□ -1.96
SPG11-223ENST00000560858 CCDC8Q9H0W5 538 aaPredicted RBP2.83□□□□□ -1.96
SPG11-223ENST00000560858 OSBPL5Q9H0X9 879 aaPredicted RBP2.83□□□□□ -1.96
SPG11-223ENST00000560858 GOLPH3LQ9H4A5 285 aa2.83□□□□□ -1.96
SPG11-223ENST00000560858 IL17RBQ9NRM6 502 aa2.83□□□□□ -1.96
SPG11-223ENST00000560858 PFDN2Q9UHV9 154 aa2.83□□□□□ -1.96
SPG11-223ENST00000560858 RCOR1Q9UKL0 485 aa2.83□□□□□ -1.96
SPG11-223ENST00000560858 SBF2Q86WG5 1849 aa2.83□□□□□ -1.96
SPG11-223ENST00000560858 ZNF804BA4D1E1 1349 aa2.83□□□□□ -1.96
SPG11-223ENST00000560858 WDR19Q8NEZ3 1342 aa2.83□□□□□ -1.96
SPG11-223ENST00000560858 COL5A2P05997 1499 aaPredicted RBP2.83□□□□□ -1.96
SPG11-223ENST00000560858 DUOX1Q9NRD9 1551 aa2.83□□□□□ -1.96
SPG11-223ENST00000560858 TNRC6CQ9HCJ0 1690 aaKnown RBP2.82□□□□□ -1.96
SPG11-223ENST00000560858 COL24A1Q17RW2 1714 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 DDX60LQ5H9U9 1706 aaKnown RBP2.82□□□□□ -1.96
SPG11-223ENST00000560858 NRAPQ86VF7 1730 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 COL14A1Q05707 1796 aaKnown RBP2.82□□□□□ -1.96
SPG11-223ENST00000560858 KIF13BQ9NQT8 1826 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 CACNA1SQ13698 1873 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 CCDC88AQ3V6T2 1871 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 CDK5RAP2Q96SN8 1893 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 MYH7BA7E2Y1 1941 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 TCRBV16S1A1N1A0A5B0 115 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 KIF2AO00139 706 aaPredicted RBP2.82□□□□□ -1.96
SPG11-223ENST00000560858 PDPK1O15530 556 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 ORC4O43929 436 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 CIAO1O76071 339 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 KIF20AO95235 890 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 YEATS4O95619 227 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 LY86O95711 162 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 PRKCGP05129 697 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 PHKG2P15735 406 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 GPD1P21695 349 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 PTX3P26022 381 aaPredicted RBP2.82□□□□□ -1.96
SPG11-223ENST00000560858 ERCC5P28715 1186 aaPredicted RBP2.82□□□□□ -1.96
SPG11-223ENST00000560858 GSDMDP57764 484 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 GABPB1Q06547 395 aaPredicted RBP2.82□□□□□ -1.96
SPG11-223ENST00000560858 NEXNQ0ZGT2 675 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 LRMPQ12912 555 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 DHX8Q14562 1220 aaKnown RBP2.82□□□□□ -1.96
SPG11-223ENST00000560858 BMT2Q1RMZ1 405 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 MCMDC2Q4G0Z9 681 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 TMCO4Q5TGY1 634 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 RUSC1-AS1Q66K80 236 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 C11orf87Q6NUJ2 197 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 UNQ6494/PRO21346Q6UXR6 183 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 CCDC73Q6ZRK6 1079 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 ATG9AQ7Z3C6 839 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 CCDC186Q7Z3E2 898 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 DDX53Q86TM3 631 aaKnown RBP2.82□□□□□ -1.96
SPG11-223ENST00000560858 CREBRFQ8IUR6 639 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 MAPKAPK5Q8IW41 473 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 DHX40Q8IX18 779 aaKnown RBP2.82□□□□□ -1.96
SPG11-223ENST00000560858 CKAP2LQ8IYA6 745 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 CEP57L1Q8IYX8 460 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 KIAA1958Q8N8K9 716 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 SPC24Q8NBT2 197 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 CCDC150Q8NCX0 1101 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 BICD2Q8TD16 824 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 FERMT2Q96AC1 680 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 RGMAQ96B86 450 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 CHMP4CQ96CF2 233 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 EDC3Q96F86 508 aaKnown RBP2.82□□□□□ -1.96
SPG11-223ENST00000560858 ZNF274Q96GC6 653 aaPredicted RBP2.82□□□□□ -1.96
SPG11-223ENST00000560858 C16orf45Q96MC5 204 aaPredicted RBP2.82□□□□□ -1.96
SPG11-223ENST00000560858 ZNF396Q96N95 335 aaPredicted RBP2.82□□□□□ -1.96
SPG11-223ENST00000560858 USP28Q96RU2 1077 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 TIMP4Q99727 224 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 MYD88Q99836 296 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 WACQ9BTA9 647 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 MYL10Q9BUA6 226 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 TRIM5Q9C035 493 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 REXO4Q9GZR2 422 aaKnown RBP2.82□□□□□ -1.96
SPG11-223ENST00000560858 BOLA2Q9H3K6 86 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 HELLSQ9NRZ9 838 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 CGNQ9P2M7 1197 aaKnown RBP2.82□□□□□ -1.96
SPG11-223ENST00000560858 CLIP2Q9UDT6 1046 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 CTNNA3Q9UI47 895 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 CFAP45Q9UL16 551 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 PAXBP1Q9Y5B6 917 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 MROH7-TTC4A0A0A0MT08 1334 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 ZMYM6O95789 1325 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 SLIT2O94813 1529 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 COL16A1Q07092 1604 aaPredicted RBP2.82□□□□□ -1.96
SPG11-223ENST00000560858 NAV1Q8NEY1 1877 aa2.82□□□□□ -1.96
SPG11-223ENST00000560858 BAZ2AQ9UIF9 1905 aaKnown RBP2.81□□□□□ -1.96
SPG11-223ENST00000560858 FAM237AA0A1B0GTK4 181 aa2.81□□□□□ -1.96
SPG11-223ENST00000560858 GOLGA6L4A6NEF3 574 aa2.81□□□□□ -1.96
SPG11-223ENST00000560858 MANSC4A6NHS7 340 aaPredicted RBP2.81□□□□□ -1.96
SPG11-223ENST00000560858 DRGXA6NNA5 263 aa2.81□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms