RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 NFICP08651 508 aa19.21■□□□□ 0.67
TSPAN3-208ENST00000560514 USP17L7P0C7H9 530 aa19.21■□□□□ 0.67
TSPAN3-208ENST00000560514 BCKDHBP21953 392 aa19.21■□□□□ 0.67
TSPAN3-208ENST00000560514 ATXN3P54252 364 aaPredicted RBP19.21■□□□□ 0.67
TSPAN3-208ENST00000560514 NFE2Q16621 373 aaPredicted RBP19.21■□□□□ 0.67
TSPAN3-208ENST00000560514 WSCD1Q658N2 575 aa19.21■□□□□ 0.67
TSPAN3-208ENST00000560514 PKD1L2Q7Z442 2459 aa19.21■□□□□ 0.67
TSPAN3-208ENST00000560514 SYT2Q8N9I0 419 aaPredicted RBP19.21■□□□□ 0.67
TSPAN3-208ENST00000560514 FAM184AQ8NB25 1140 aa19.21■□□□□ 0.67
TSPAN3-208ENST00000560514 RIN3Q8TB24 985 aa19.21■□□□□ 0.67
TSPAN3-208ENST00000560514 EZH1Q92800 747 aaPredicted RBP19.21■□□□□ 0.67
TSPAN3-208ENST00000560514 PI4K2AQ9BTU6 479 aa19.21■□□□□ 0.67
TSPAN3-208ENST00000560514 TMEM206Q9H813 350 aa19.21■□□□□ 0.67
TSPAN3-208ENST00000560514 PCNX2A6NKB5 2137 aa19.21■□□□□ 0.67
TSPAN3-208ENST00000560514 ANO9A1A5B4 782 aa19.2■□□□□ 0.66
TSPAN3-208ENST00000560514 ADRB2P07550 413 aa19.2■□□□□ 0.66
TSPAN3-208ENST00000560514 SCP2P22307 547 aa19.2■□□□□ 0.66
TSPAN3-208ENST00000560514 PI4KAP42356 2102 aa19.2■□□□□ 0.66
TSPAN3-208ENST00000560514 DPP6P42658 865 aa19.2■□□□□ 0.66
TSPAN3-208ENST00000560514 NEK4P51957 841 aa19.2■□□□□ 0.66
TSPAN3-208ENST00000560514 NCKAP1LP55160 1127 aa19.2■□□□□ 0.66
TSPAN3-208ENST00000560514 RPL10AP62906 217 aaKnown RBP19.2■□□□□ 0.66
TSPAN3-208ENST00000560514 ZNF77Q15935 545 aa19.2■□□□□ 0.66
TSPAN3-208ENST00000560514 RASSF3Q86WH2 238 aa19.2■□□□□ 0.66
TSPAN3-208ENST00000560514 HDDC3Q8N4P3 179 aa19.2■□□□□ 0.66
TSPAN3-208ENST00000560514 KCTD17Q8N5Z5 321 aa19.2■□□□□ 0.66
TSPAN3-208ENST00000560514 FSIP1Q8NA03 581 aa19.2■□□□□ 0.66
TSPAN3-208ENST00000560514 FBXO18Q8NFZ0 1043 aa19.2■□□□□ 0.66
TSPAN3-208ENST00000560514 USP33Q8TEY7 942 aa19.2■□□□□ 0.66
TSPAN3-208ENST00000560514 WDFY3Q8IZQ1 3526 aa19.2■□□□□ 0.66
TSPAN3-208ENST00000560514 ANKRD11Q6UB99 2663 aaPredicted RBP19.19■□□□□ 0.66
TSPAN3-208ENST00000560514 H0Y626 953 aa19.19■□□□□ 0.66
TSPAN3-208ENST00000560514 K7ENM7 598 aa19.19■□□□□ 0.66
TSPAN3-208ENST00000560514 TRIM16O95361 564 aa19.19■□□□□ 0.66
TSPAN3-208ENST00000560514 NFATC1O95644 943 aa19.19■□□□□ 0.66
TSPAN3-208ENST00000560514 PRPHP41219 470 aa19.19■□□□□ 0.66
TSPAN3-208ENST00000560514 GPR15P49685 360 aa19.19■□□□□ 0.66
TSPAN3-208ENST00000560514 SIM1P81133 766 aaPredicted RBP19.19■□□□□ 0.66
TSPAN3-208ENST00000560514 EML3Q32P44 896 aa19.19■□□□□ 0.66
TSPAN3-208ENST00000560514 SV2CQ496J9 727 aa19.19■□□□□ 0.66
TSPAN3-208ENST00000560514 CCDC33Q8N5R6 958 aa19.19■□□□□ 0.66
TSPAN3-208ENST00000560514 STKLD1Q8NE28 680 aa19.19■□□□□ 0.66
TSPAN3-208ENST00000560514 MDGA1Q8NFP4 955 aa19.19■□□□□ 0.66
TSPAN3-208ENST00000560514 PLIN2Q99541 437 aa19.19■□□□□ 0.66
TSPAN3-208ENST00000560514 ASB7Q9H672 318 aa19.19■□□□□ 0.66
TSPAN3-208ENST00000560514 DPP3Q9NY33 737 aa19.19■□□□□ 0.66
TSPAN3-208ENST00000560514 BCCIPQ9P287 314 aaKnown RBP eCLIP19.19■□□□□ 0.66
TSPAN3-208ENST00000560514 CPSF3Q9UKF6 684 aaKnown RBP19.19■□□□□ 0.66
TSPAN3-208ENST00000560514 KLK13Q9UKR3 277 aa19.19■□□□□ 0.66
TSPAN3-208ENST00000560514 MMP17Q9ULZ9 603 aa19.19■□□□□ 0.66
TSPAN3-208ENST00000560514 C2CD2Q9Y426 696 aa19.19■□□□□ 0.66
TSPAN3-208ENST00000560514 PCDHB6Q9Y5E3 794 aa19.19■□□□□ 0.66
TSPAN3-208ENST00000560514 A0A0B4J269 797 aa19.18■□□□□ 0.66
TSPAN3-208ENST00000560514 SPAARA0A1B0GVQ0 90 aa19.18■□□□□ 0.66
TSPAN3-208ENST00000560514 KPNA7A9QM74 516 aa19.18■□□□□ 0.66
TSPAN3-208ENST00000560514 TULP1O00294 542 aaPredicted RBP19.18■□□□□ 0.66
TSPAN3-208ENST00000560514 TNFRSF10BO14763 440 aa19.18■□□□□ 0.66
TSPAN3-208ENST00000560514 FAM189A1O60320 539 aa19.18■□□□□ 0.66
TSPAN3-208ENST00000560514 PLA2G4BP0C869 781 aa19.18■□□□□ 0.66
TSPAN3-208ENST00000560514 ENGP17813 658 aa19.18■□□□□ 0.66
TSPAN3-208ENST00000560514 USP4Q13107 963 aa19.18■□□□□ 0.66
TSPAN3-208ENST00000560514 BYSLQ13895 437 aaKnown RBP19.18■□□□□ 0.66
TSPAN3-208ENST00000560514 KCNB1Q14721 858 aa19.18■□□□□ 0.66
TSPAN3-208ENST00000560514 CRY1Q16526 586 aa19.18■□□□□ 0.66
TSPAN3-208ENST00000560514 SDHAF4Q5VUM1 108 aa19.18■□□□□ 0.66
TSPAN3-208ENST00000560514 ARMCX6Q7L4S7 300 aa19.18■□□□□ 0.66
TSPAN3-208ENST00000560514 SYT12Q8IV01 421 aa19.18■□□□□ 0.66
TSPAN3-208ENST00000560514 EFCAB13Q8IY85 973 aa19.18■□□□□ 0.66
TSPAN3-208ENST00000560514 WHAMMQ8TF30 809 aa19.18■□□□□ 0.66
TSPAN3-208ENST00000560514 ZNF560Q96MR9 790 aa19.18■□□□□ 0.66
TSPAN3-208ENST00000560514 CYP2S1Q96SQ9 504 aa19.18■□□□□ 0.66
TSPAN3-208ENST00000560514 MMTAG2Q9BU76 263 aaKnown RBP19.18■□□□□ 0.66
TSPAN3-208ENST00000560514 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa19.17■□□□□ 0.66
TSPAN3-208ENST00000560514 NPHP3-ACAD11A0A0J9YXS1 232 aa19.17■□□□□ 0.66
TSPAN3-208ENST00000560514 PIGRP01833 764 aa19.17■□□□□ 0.66
TSPAN3-208ENST00000560514 CFIP05156 583 aa19.17■□□□□ 0.66
TSPAN3-208ENST00000560514 PDE6CP51160 858 aa19.17■□□□□ 0.66
TSPAN3-208ENST00000560514 SLC12A3P55017 1021 aa19.17■□□□□ 0.66
TSPAN3-208ENST00000560514 MRPS21P82921 87 aaKnown RBP19.17■□□□□ 0.66
TSPAN3-208ENST00000560514 DDR2Q16832 855 aa19.17■□□□□ 0.66
TSPAN3-208ENST00000560514 CCDC83Q8IWF9 413 aa19.17■□□□□ 0.66
TSPAN3-208ENST00000560514 TMEFF1Q8IYR6 380 aa19.17■□□□□ 0.66
TSPAN3-208ENST00000560514 MYCT1Q8N699 235 aa19.17■□□□□ 0.66
TSPAN3-208ENST00000560514 SH3RF2Q8TEC5 729 aa19.17■□□□□ 0.66
TSPAN3-208ENST00000560514 TRMT2BQ96GJ1 504 aaKnown RBP19.17■□□□□ 0.66
TSPAN3-208ENST00000560514 CCSER1Q9C0I3 900 aa19.17■□□□□ 0.66
TSPAN3-208ENST00000560514 POLMQ9NP87 494 aaPredicted RBP19.17■□□□□ 0.66
TSPAN3-208ENST00000560514 ODF2LQ9ULJ1 636 aa19.17■□□□□ 0.66
TSPAN3-208ENST00000560514 AKAP13Q12802 2813 aa19.16■□□□□ 0.66
TSPAN3-208ENST00000560514 GON4LQ3T8J9 2241 aa19.16■□□□□ 0.66
TSPAN3-208ENST00000560514 MYMKA6NI61 221 aa19.16■□□□□ 0.66
TSPAN3-208ENST00000560514 K7EQS6 105 aa19.16■□□□□ 0.66
TSPAN3-208ENST00000560514 NOL4O94818 638 aa19.16■□□□□ 0.66
TSPAN3-208ENST00000560514 FAM13AO94988 1023 aa19.16■□□□□ 0.66
TSPAN3-208ENST00000560514 SEC24BO95487 1268 aa19.16■□□□□ 0.66
TSPAN3-208ENST00000560514 HDCP19113 662 aa19.16■□□□□ 0.66
TSPAN3-208ENST00000560514 ABCD1P33897 745 aa19.16■□□□□ 0.66
TSPAN3-208ENST00000560514 ACOT2P49753 483 aa19.16■□□□□ 0.66
TSPAN3-208ENST00000560514 HMGN5P82970 282 aaKnown RBP19.16■□□□□ 0.66
TSPAN3-208ENST00000560514 HYIQ5T013 277 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms