RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 POTEHQ6S545 545 aa12.61□□□□□ -0.39
LDLR-212ENST00000560467 CRELD2Q6UXH1 353 aaPredicted RBP12.61□□□□□ -0.39
LDLR-212ENST00000560467 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.61□□□□□ -0.39
LDLR-212ENST00000560467 TPRG1Q6ZUI0 275 aa12.61□□□□□ -0.39
LDLR-212ENST00000560467 EHBP1Q8NDI1 1231 aa12.61□□□□□ -0.39
LDLR-212ENST00000560467 BEST2Q8NFU1 509 aa12.61□□□□□ -0.39
LDLR-212ENST00000560467 SPAG5Q96R06 1193 aa12.61□□□□□ -0.39
LDLR-212ENST00000560467 LSM14BQ9BX40 385 aaKnown RBP12.61□□□□□ -0.39
LDLR-212ENST00000560467 SLC38A7Q9NVC3 462 aa12.61□□□□□ -0.39
LDLR-212ENST00000560467 C2CD2Q9Y426 696 aa12.61□□□□□ -0.39
LDLR-212ENST00000560467 ACACBO00763 2458 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 LRRIQ3A6PVS8 624 aaPredicted RBP12.6□□□□□ -0.39
LDLR-212ENST00000560467 I3L4J1 428 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 ABLIM1O14639 778 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 SPTLC1O15269 473 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 POU2F2P09086 479 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 CXCL8P10145 99 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 FGFR3P22607 806 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 TKTP29401 623 aaKnown RBP12.6□□□□□ -0.39
LDLR-212ENST00000560467 TNFSF9P41273 254 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 PIK3CAP42336 1068 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 DLG4P78352 724 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 CLDN10P78369 228 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 PFKPQ01813 784 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 SGSM1Q2NKQ1 1148 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 ZNF528Q3MIS6 628 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 VARS2Q5ST30 1063 aaKnown RBP12.6□□□□□ -0.39
LDLR-212ENST00000560467 TSSK4Q6SA08 328 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 CD300LGQ6UXG3 332 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 SV2AQ7L0J3 742 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 ENOSF1Q7L5Y1 443 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 CCDC186Q7Z3E2 898 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 CCDC112Q8NEF3 446 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 OR8K1Q8NGG5 319 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 KIF12Q96FN5 646 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 PLA2G2FQ9BZM2 168 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 HAPLN2Q9GZV7 340 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 INTS2Q9H0H0 1204 aaKnown RBP12.6□□□□□ -0.39
LDLR-212ENST00000560467 PLCB1Q9NQ66 1216 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 INTS13Q9NVM9 706 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 RAB20Q9NX57 234 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 NCDNQ9UBB6 729 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 MTRRQ9UBK8 725 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 FBXO4Q9UKT5 387 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 SMG5Q9UPR3 1016 aaKnown RBP12.6□□□□□ -0.39
LDLR-212ENST00000560467 MRPS23Q9Y3D9 190 aaKnown RBP12.6□□□□□ -0.39
LDLR-212ENST00000560467 CDY1Q9Y6F8 540 aa12.6□□□□□ -0.39
LDLR-212ENST00000560467 DOCK6Q96HP0 2047 aa12.59□□□□□ -0.39
LDLR-212ENST00000560467 A0A1W2PQJ5 194 aa12.59□□□□□ -0.39
LDLR-212ENST00000560467 LACTBL1A8MY62 500 aa12.59□□□□□ -0.39
LDLR-212ENST00000560467 B3GAT3O94766 335 aa12.59□□□□□ -0.39
LDLR-212ENST00000560467 RHOP08100 348 aa12.59□□□□□ -0.39
LDLR-212ENST00000560467 KRT19P08727 400 aa12.59□□□□□ -0.39
LDLR-212ENST00000560467 CEBPBP17676 345 aa12.59□□□□□ -0.39
LDLR-212ENST00000560467 PON1P27169 355 aa12.59□□□□□ -0.39
LDLR-212ENST00000560467 MFAP3P55082 362 aa12.59□□□□□ -0.39
LDLR-212ENST00000560467 MCCD1P59942 119 aaPredicted RBP12.59□□□□□ -0.39
LDLR-212ENST00000560467 RBP5P82980 135 aa12.59□□□□□ -0.39
LDLR-212ENST00000560467 ZBED6P86452 979 aa12.59□□□□□ -0.39
LDLR-212ENST00000560467 MYO1EQ12965 1108 aa12.59□□□□□ -0.39
LDLR-212ENST00000560467 NCOA4Q13772 614 aa12.59□□□□□ -0.39
LDLR-212ENST00000560467 HS1BP3Q53T59 392 aa12.59□□□□□ -0.39
LDLR-212ENST00000560467 ZBTB41Q5SVQ8 909 aa12.59□□□□□ -0.39
LDLR-212ENST00000560467 PDXDC1Q6P996 788 aa12.59□□□□□ -0.39
LDLR-212ENST00000560467 C3orf58Q8NDZ4 430 aa12.59□□□□□ -0.39
LDLR-212ENST00000560467 TAF4BQ92750 862 aa12.59□□□□□ -0.39
LDLR-212ENST00000560467 MCRS1Q96EZ8 462 aa12.59□□□□□ -0.39
LDLR-212ENST00000560467 DDX27Q96GQ7 796 aaKnown RBP12.59□□□□□ -0.39
LDLR-212ENST00000560467 NT5C1BQ96P26 610 aa12.59□□□□□ -0.39
LDLR-212ENST00000560467 PPP1R10Q96QC0 940 aaKnown RBP12.59□□□□□ -0.39
LDLR-212ENST00000560467 OSBPL6Q9BZF3 934 aa12.59□□□□□ -0.39
LDLR-212ENST00000560467 GOLGA2P5Q9HBQ8 144 aa12.59□□□□□ -0.39
LDLR-212ENST00000560467 HEBP1Q9NRV9 189 aa12.59□□□□□ -0.39
LDLR-212ENST00000560467 CEP72Q9P209 647 aa12.59□□□□□ -0.39
LDLR-212ENST00000560467 CAPN11Q9UMQ6 739 aa12.59□□□□□ -0.39
LDLR-212ENST00000560467 UBQLN1Q9UMX0 589 aaKnown RBP12.59□□□□□ -0.39
LDLR-212ENST00000560467 PCDHGA2Q9Y5H1 932 aa12.59□□□□□ -0.39
LDLR-212ENST00000560467 TTC26A0AVF1 554 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 SHISA7A6NL88 538 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 TMEM189-UBE2V1I3L0A0 370 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 FAM189A1O60320 539 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 ECI2O75521 394 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 IPO7O95373 1038 aaKnown RBP12.58□□□□□ -0.4
LDLR-212ENST00000560467 ATICP31939 592 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 CASP14P31944 242 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 KRT9P35527 623 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 PBX1P40424 430 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 BRCC3P46736 316 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 CLCNKBP51801 687 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 POLR2FP61218 127 aaKnown RBP12.58□□□□□ -0.4
LDLR-212ENST00000560467 YWHAEP62258 255 aaKnown RBP12.58□□□□□ -0.4
LDLR-212ENST00000560467 PPP3CAQ08209 521 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 SLC10A6Q3KNW5 377 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 ZACNQ401N2 412 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 CBWD6Q4V339 395 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 CBWD3Q5JTY5 395 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 CBWD5Q5RIA9 395 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 KLHDC7AQ5VTJ3 777 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 TANGO2Q6ICL3 276 aa12.58□□□□□ -0.4
LDLR-212ENST00000560467 TRIM65Q6PJ69 517 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms