RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 CYFIP2Q96F07 1278 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 PPP1R13BQ96KQ4 1090 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 ZNF558Q96NG5 402 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 ALS2CR12Q96Q35 445 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 TGS1Q96RS0 853 aaKnown RBP6.82□□□□□ -1.32
SPG11-221ENST00000560299 ACBD6Q9BR61 282 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 MRPL45Q9BRJ2 306 aaKnown RBP6.82□□□□□ -1.32
SPG11-221ENST00000560299 PAAF1Q9BRP4 392 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 SYT11Q9BT88 431 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 ELOVL4Q9GZR5 314 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 SDCBP2Q9H190 292 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 ISCUQ9H1K1 167 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 SYNCQ9H7C4 482 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 DNAJB4Q9UDY4 337 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 GUCA1BQ9UMX6 200 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 PRG3Q9Y2Y8 225 aaPredicted RBP6.82□□□□□ -1.32
SPG11-221ENST00000560299 PCDHB12Q9Y5F1 795 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 CDH23Q9H251 3354 aa6.82□□□□□ -1.32
SPG11-221ENST00000560299 FNDC1Q4ZHG4 1894 aaPredicted RBP6.81□□□□□ -1.32
SPG11-221ENST00000560299 A0A0A6YYK5 440 aaPredicted RBP6.81□□□□□ -1.32
SPG11-221ENST00000560299 LINC01553A4QN01 128 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 OR6C75A6NL08 312 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 M0QYV0 167 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 ZNF263O14978 683 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 CYP1A1P04798 512 aaPredicted RBP6.81□□□□□ -1.32
SPG11-221ENST00000560299 SETSIPP0DME0 302 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 UNGP13051 313 aaPredicted RBP6.81□□□□□ -1.32
SPG11-221ENST00000560299 DESP17661 470 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 ABCB4P21439 1286 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 CDH5P33151 784 aaPredicted RBP6.81□□□□□ -1.32
SPG11-221ENST00000560299 PPM1AP35813 382 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 BMPR1AP36894 532 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 ACADSBP45954 432 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 NOP2P46087 812 aaKnown RBP6.81□□□□□ -1.32
SPG11-221ENST00000560299 BRCC3P46736 316 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 SLC11A1P49279 550 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 GALCP54803 685 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 BCAR1P56945 870 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 GNG11P61952 73 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 NOMO3P69849 1222 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 DEFB103AP81534 67 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 PLCB3Q01970 1234 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 CENPCQ03188 943 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 KRT17Q04695 432 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 SMARCB1Q12824 385 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 USP41Q3LFD5 358 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 NAA35Q5VZE5 725 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 ARHGAP17Q68EM7 881 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 KIAA1841Q6NSI8 718 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 FAM117BQ6P1L5 589 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 KCNT2Q6UVM3 1135 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 TMEM92Q6UXU6 159 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.81□□□□□ -1.32
SPG11-221ENST00000560299 C4orf50Q6ZRC1 276 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 ANKS3Q6ZW76 656 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 PHF13Q86YI8 300 aaPredicted RBP6.81□□□□□ -1.32
SPG11-221ENST00000560299 SYCE1Q8N0S2 351 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 TMEM130Q8N3G9 435 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 FIBCD1Q8N539 461 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 ANKRD52Q8NB46 1076 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 C3orf58Q8NDZ4 430 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 TRIM58Q8NG06 486 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 IPO4Q8TEX9 1081 aaKnown RBP6.81□□□□□ -1.32
SPG11-221ENST00000560299 KBTBD7Q8WVZ9 684 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 CPA5Q8WXQ8 436 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 RFFLQ8WZ73 363 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 TFAP2BQ92481 460 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 RABGGTAQ92696 567 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 TMEM169Q96HH4 297 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 HNRNPABQ99729 332 aaKnown RBP6.81□□□□□ -1.32
SPG11-221ENST00000560299 SYT15Q9BQS2 421 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 MED10Q9BTT4 135 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 C11orf84Q9BUA3 381 aaPredicted RBP6.81□□□□□ -1.32
SPG11-221ENST00000560299 TTYH1Q9H313 450 aaPredicted RBP6.81□□□□□ -1.32
SPG11-221ENST00000560299 MRPL47Q9HD33 250 aaKnown RBP6.81□□□□□ -1.32
SPG11-221ENST00000560299 ACP6Q9NPH0 428 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 SPG21Q9NZD8 308 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 ADAM22Q9P0K1 906 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 WDR35Q9P2L0 1181 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 HCSTQ9UBK5 93 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 CACNG4Q9UBN1 327 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 LCMT1Q9UIC8 334 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 STRIP2Q9ULQ0 834 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.81□□□□□ -1.32
SPG11-221ENST00000560299 REXO2Q9Y3B8 237 aaKnown RBP6.81□□□□□ -1.32
SPG11-221ENST00000560299 SCINQ9Y6U3 715 aa6.81□□□□□ -1.32
SPG11-221ENST00000560299 PTPRSQ13332 1948 aa6.8□□□□□ -1.32
SPG11-221ENST00000560299 MACROD2A1Z1Q3 448 aa6.8□□□□□ -1.32
SPG11-221ENST00000560299 USP27XA6NNY8 438 aa6.8□□□□□ -1.32
SPG11-221ENST00000560299 H3BNC9 293 aa6.8□□□□□ -1.32
SPG11-221ENST00000560299 O00370 1275 aa6.8□□□□□ -1.32
SPG11-221ENST00000560299 MICAL2O94851 1124 aa6.8□□□□□ -1.32
SPG11-221ENST00000560299 OAZ2O95190 189 aa6.8□□□□□ -1.32
SPG11-221ENST00000560299 EFEMP2O95967 443 aa6.8□□□□□ -1.32
SPG11-221ENST00000560299 CA3P07451 260 aa6.8□□□□□ -1.32
SPG11-221ENST00000560299 FAM200BP0CF97 657 aa6.8□□□□□ -1.32
SPG11-221ENST00000560299 TNNT1P13805 278 aa6.8□□□□□ -1.32
SPG11-221ENST00000560299 LMO2P25791 158 aa6.8□□□□□ -1.32
SPG11-221ENST00000560299 GATMP50440 423 aa6.8□□□□□ -1.32
SPG11-221ENST00000560299 BCAT1P54687 386 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms