RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 LTBP2Q14767 1821 aa11.88□□□□□ -0.51
USP3-218ENST00000560202 NT5C1B-RDH14C9J2C7 533 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 RIOK3O14730 519 aaKnown RBP11.87□□□□□ -0.51
USP3-218ENST00000560202 SYN3O14994 580 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 ATMINO43313 823 aaPredicted RBP11.87□□□□□ -0.51
USP3-218ENST00000560202 CALB1P05937 261 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 RRM1P23921 792 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 ADORA2BP29275 332 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 TKTP29401 623 aaKnown RBP11.87□□□□□ -0.51
USP3-218ENST00000560202 PBX3P40426 434 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 ALDH7A1P49419 539 aaKnown RBP11.87□□□□□ -0.51
USP3-218ENST00000560202 YWHAHQ04917 246 aaPredicted RBP11.87□□□□□ -0.51
USP3-218ENST00000560202 CCDC142Q17RM4 750 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 PKDCCQ504Y2 493 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 MDH1BQ5I0G3 518 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 TMEM240Q5SV17 173 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 PSRC1Q6PGN9 363 aaPredicted RBP11.87□□□□□ -0.51
USP3-218ENST00000560202 TTC30AQ86WT1 665 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 ANKRD52Q8NB46 1076 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 TPCN2Q8NHX9 752 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 SLC2A14Q8TDB8 520 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 HNRNPABQ99729 332 aaKnown RBP11.87□□□□□ -0.51
USP3-218ENST00000560202 CRTAC1Q9NQ79 661 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 CHORDC1Q9UHD1 332 aaPredicted RBP11.87□□□□□ -0.51
USP3-218ENST00000560202 COG5Q9UP83 839 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 PCDHGC5Q9Y5F6 944 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 MYBPHLA2RUH7 354 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 GRID2IPA4D2P6 1211 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 PALMO75781 387 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 MTA2O94776 668 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 SETSIPP0DME0 302 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 HADHBP55084 474 aaKnown RBP11.87□□□□□ -0.51
USP3-218ENST00000560202 ELAVL2Q12926 359 aaKnown RBP11.87□□□□□ -0.51
USP3-218ENST00000560202 PDCLQ13371 301 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 BTG3Q14201 252 aaPredicted RBP11.87□□□□□ -0.51
USP3-218ENST00000560202 PTPN20Q4JDL3 420 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 INTS6LQ5JSJ4 861 aaKnown RBP11.87□□□□□ -0.51
USP3-218ENST00000560202 FAM171A1Q5VUB5 890 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 FUT10Q6P4F1 479 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 PHLDB2Q86SQ0 1253 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 TMEM173Q86WV6 379 aaPredicted RBP11.87□□□□□ -0.51
USP3-218ENST00000560202 CMTR2Q8IYT2 770 aaKnown RBP11.87□□□□□ -0.51
USP3-218ENST00000560202 FUKQ8N0W3 1084 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 MSANTD4Q8NCY6 345 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 MYCBPAPQ8TBZ2 947 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 ABHD8Q96I13 439 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 CALR3Q96L12 384 aaKnown RBP11.87□□□□□ -0.51
USP3-218ENST00000560202 CPXM1Q96SM3 734 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.87□□□□□ -0.513e-7■□□□□ 11.3
USP3-218ENST00000560202 NUP85Q9BW27 656 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 GPR62Q9BZJ7 368 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 UVRAGQ9P2Y5 699 aa11.87□□□□□ -0.51
USP3-218ENST00000560202 ZMYND8Q9ULU4 1186 aaPredicted RBP11.87□□□□□ -0.51
USP3-218ENST00000560202 SF3B1O75533 1304 aaKnown RBP eCLIP11.87□□□□□ -0.51
USP3-218ENST00000560202 ALPK3Q96L96 1907 aa11.86□□□□□ -0.51
USP3-218ENST00000560202 COL4A6Q14031 1691 aa11.86□□□□□ -0.51
USP3-218ENST00000560202 CTAGE9A4FU28 777 aa11.86□□□□□ -0.51
USP3-218ENST00000560202 OAZ2O95190 189 aa11.86□□□□□ -0.51
USP3-218ENST00000560202 FGFR3P22607 806 aa11.86□□□□□ -0.51
USP3-218ENST00000560202 BCAT1P54687 386 aa11.86□□□□□ -0.51
USP3-218ENST00000560202 PLCB3Q01970 1234 aa11.86□□□□□ -0.51
USP3-218ENST00000560202 PDE4CQ08493 712 aa11.86□□□□□ -0.51
USP3-218ENST00000560202 BST2Q10589 180 aaKnown RBP11.86□□□□□ -0.51
USP3-218ENST00000560202 SPOUT1Q5T280 376 aaKnown RBP11.86□□□□□ -0.51
USP3-218ENST00000560202 COL13A1Q5TAT6 717 aaPredicted RBP11.86□□□□□ -0.51
USP3-218ENST00000560202 PLEKHA7Q6IQ23 1121 aa11.86□□□□□ -0.51
USP3-218ENST00000560202 LLGL2Q6P1M3 1020 aa11.86□□□□□ -0.51
USP3-218ENST00000560202 FAM171BQ6P995 826 aa11.86□□□□□ -0.51
USP3-218ENST00000560202 PAQR9Q6ZVX9 377 aa11.86□□□□□ -0.51
USP3-218ENST00000560202 ZNF771Q7L3S4 317 aaPredicted RBP11.86□□□□□ -0.51
USP3-218ENST00000560202 OR10T2Q8NGX3 314 aa11.86□□□□□ -0.51
USP3-218ENST00000560202 ZNF564Q8TBZ8 553 aaPredicted RBP11.86□□□□□ -0.51
USP3-218ENST00000560202 BCL7CQ8WUZ0 217 aaPredicted RBP11.86□□□□□ -0.51
USP3-218ENST00000560202 SLC35F5Q8WV83 523 aa11.86□□□□□ -0.51
USP3-218ENST00000560202 DPF3Q92784 378 aa11.86□□□□□ -0.51
USP3-218ENST00000560202 C18orf8Q96DM3 657 aa11.86□□□□□ -0.51
USP3-218ENST00000560202 PCED1BQ96HM7 432 aa11.86□□□□□ -0.51
USP3-218ENST00000560202 YME1L1Q96TA2 773 aa11.86□□□□□ -0.51
USP3-218ENST00000560202 NAPGQ99747 312 aaPredicted RBP11.86□□□□□ -0.51
USP3-218ENST00000560202 B3GNT5Q9BYG0 378 aa11.86□□□□□ -0.51
USP3-218ENST00000560202 SYNCQ9H7C4 482 aa11.86□□□□□ -0.51
USP3-218ENST00000560202 MRPL47Q9HD33 250 aaKnown RBP11.86□□□□□ -0.51
USP3-218ENST00000560202 ST7Q9NRC1 585 aa11.86□□□□□ -0.51
USP3-218ENST00000560202 CXXC1Q9P0U4 656 aaPredicted RBP11.86□□□□□ -0.51
USP3-218ENST00000560202 STRIP2Q9ULQ0 834 aa11.86□□□□□ -0.51
USP3-218ENST00000560202 TULP2O00295 520 aa11.85□□□□□ -0.51
USP3-218ENST00000560202 CLDN5O00501 218 aa11.85□□□□□ -0.51
USP3-218ENST00000560202 BUB1BO60566 1050 aaPredicted RBP11.85□□□□□ -0.51
USP3-218ENST00000560202 GJB5O95377 273 aa11.85□□□□□ -0.51
USP3-218ENST00000560202 GABRB2P47870 512 aa11.85□□□□□ -0.51
USP3-218ENST00000560202 TSPY1Q01534 308 aa11.85□□□□□ -0.51
USP3-218ENST00000560202 MAMLD1Q13495 774 aa11.85□□□□□ -0.51
USP3-218ENST00000560202 VARS2Q5ST30 1063 aaKnown RBP11.85□□□□□ -0.51
USP3-218ENST00000560202 CYP4A22Q5TCH4 519 aa11.85□□□□□ -0.51
USP3-218ENST00000560202 PMF1Q6P1K2 205 aa11.85□□□□□ -0.51
USP3-218ENST00000560202 KCNT2Q6UVM3 1135 aa11.85□□□□□ -0.51
USP3-218ENST00000560202 SLFN11Q7Z7L1 901 aa11.85□□□□□ -0.51
USP3-218ENST00000560202 CEP57Q86XR8 500 aa11.85□□□□□ -0.51
USP3-218ENST00000560202 SYCE1Q8N0S2 351 aa11.85□□□□□ -0.51
USP3-218ENST00000560202 LRRC57Q8N9N7 239 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms