RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 A0A0U1RQF3 1178 aa18.81■□□□□ 0.6
SNX1-208ENST00000559844 ABHD14A-ACY1A0A1B0GW23 586 aa18.81■□□□□ 0.6
SNX1-208ENST00000559844 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.81■□□□□ 0.6
SNX1-208ENST00000559844 C9IYK1 514 aa18.81■□□□□ 0.6
SNX1-208ENST00000559844 OPA1O60313 960 aa18.81■□□□□ 0.6
SNX1-208ENST00000559844 FGBP02675 491 aa18.81■□□□□ 0.6
SNX1-208ENST00000559844 MAGEA10P43363 369 aaPredicted RBP18.81■□□□□ 0.6
SNX1-208ENST00000559844 RAB27AP51159 221 aa18.81■□□□□ 0.6
SNX1-208ENST00000559844 TAP1Q03518 808 aa18.81■□□□□ 0.6
SNX1-208ENST00000559844 CYP1B1Q16678 543 aa18.81■□□□□ 0.6
SNX1-208ENST00000559844 WDR72Q3MJ13 1102 aa18.81■□□□□ 0.6
SNX1-208ENST00000559844 ZNF394Q53GI3 561 aa18.81■□□□□ 0.6
SNX1-208ENST00000559844 AADACL2Q6P093 401 aa18.81■□□□□ 0.6
SNX1-208ENST00000559844 PSRC1Q6PGN9 363 aaPredicted RBP18.81■□□□□ 0.6
SNX1-208ENST00000559844 TTC39CQ8N584 583 aa18.81■□□□□ 0.6
SNX1-208ENST00000559844 SMG8Q8ND04 991 aaKnown RBP18.81■□□□□ 0.6
SNX1-208ENST00000559844 RUFY1Q96T51 708 aa18.81■□□□□ 0.6
SNX1-208ENST00000559844 APOL6Q9BWW8 343 aa18.81■□□□□ 0.6
SNX1-208ENST00000559844 IP6K2Q9UHH9 426 aa18.81■□□□□ 0.6
SNX1-208ENST00000559844 MEFVO15553 781 aaPredicted RBP18.81■□□□□ 0.6
SNX1-208ENST00000559844 PSTPIP1O43586 416 aa18.81■□□□□ 0.6
SNX1-208ENST00000559844 STAU1O95793 577 aaKnown RBP18.81■□□□□ 0.6
SNX1-208ENST00000559844 SYF2O95926 243 aaKnown RBP18.81■□□□□ 0.6
SNX1-208ENST00000559844 ADAT2Q7Z6V5 191 aaKnown RBP18.81■□□□□ 0.6
SNX1-208ENST00000559844 PHLDB2Q86SQ0 1253 aa18.81■□□□□ 0.6
SNX1-208ENST00000559844 CPNE8Q86YQ8 564 aa18.81■□□□□ 0.6
SNX1-208ENST00000559844 GOLGA6L1Q8N7Z2 621 aa18.81■□□□□ 0.6
SNX1-208ENST00000559844 RNF169Q8NCN4 708 aa18.81■□□□□ 0.6
SNX1-208ENST00000559844 LHX5Q9H2C1 402 aa18.81■□□□□ 0.6
SNX1-208ENST00000559844 PLEKHA5Q9HAU0 1116 aa18.81■□□□□ 0.6
SNX1-208ENST00000559844 VPS18Q9P253 973 aa18.81■□□□□ 0.6
SNX1-208ENST00000559844 PCYOX1Q9UHG3 505 aa18.81■□□□□ 0.6
SNX1-208ENST00000559844 DERAQ9Y315 318 aa18.81■□□□□ 0.6
SNX1-208ENST00000559844 PTPRSQ13332 1948 aa18.81■□□□□ 0.6
SNX1-208ENST00000559844 H0YGN5 161 aa18.8■□□□□ 0.6
SNX1-208ENST00000559844 BAIAP3O94812 1187 aa18.8■□□□□ 0.6
SNX1-208ENST00000559844 FAM153BP0C7A2 387 aa18.8■□□□□ 0.6
SNX1-208ENST00000559844 SKIP12755 728 aa18.8■□□□□ 0.6
SNX1-208ENST00000559844 SSTR3P32745 418 aaPredicted RBP18.8■□□□□ 0.6
SNX1-208ENST00000559844 GGCXP38435 758 aa18.8■□□□□ 0.6
SNX1-208ENST00000559844 RBP5P82980 135 aa18.8■□□□□ 0.6
SNX1-208ENST00000559844 FAM153CQ494X1 144 aa18.8■□□□□ 0.6
SNX1-208ENST00000559844 C2CD6Q53TS8 623 aa18.8■□□□□ 0.6
SNX1-208ENST00000559844 TMEM240Q5SV17 173 aa18.8■□□□□ 0.6
SNX1-208ENST00000559844 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.8■□□□□ 0.62e-8■■■■■ 31.5
SNX1-208ENST00000559844 ECHDC2Q86YB7 292 aa18.8■□□□□ 0.6
SNX1-208ENST00000559844 RHOT1Q8IXI2 618 aa18.8■□□□□ 0.6
SNX1-208ENST00000559844 PRELID2Q8N945 189 aa18.8■□□□□ 0.6
SNX1-208ENST00000559844 C1orf131Q8NDD1 294 aaKnown RBP18.8■□□□□ 0.6
SNX1-208ENST00000559844 CXorf38Q8TB03 319 aa18.8■□□□□ 0.6
SNX1-208ENST00000559844 MAGOHBQ96A72 148 aaKnown RBP18.8■□□□□ 0.6
SNX1-208ENST00000559844 LRRC45Q96CN5 670 aa18.8■□□□□ 0.6
SNX1-208ENST00000559844 FAM153AQ9UHL3 310 aa18.8■□□□□ 0.6
SNX1-208ENST00000559844 STRIP2Q9ULQ0 834 aa18.8■□□□□ 0.6
SNX1-208ENST00000559844 ZBBXA8MT70 800 aa18.79■□□□□ 0.6
SNX1-208ENST00000559844 AGPSO00116 658 aa18.79■□□□□ 0.6
SNX1-208ENST00000559844 PODXLO00592 558 aa18.79■□□□□ 0.6
SNX1-208ENST00000559844 FSCN2O14926 492 aa18.79■□□□□ 0.6
SNX1-208ENST00000559844 EFCAB14O75071 495 aa18.79■□□□□ 0.6
SNX1-208ENST00000559844 HSPA9P38646 679 aaKnown RBP18.79■□□□□ 0.6
SNX1-208ENST00000559844 GUCY2FP51841 1108 aa18.79■□□□□ 0.6
SNX1-208ENST00000559844 ERICH1Q86X53 443 aa18.79■□□□□ 0.6
SNX1-208ENST00000559844 C12orf50Q8NA57 414 aaPredicted RBP18.79■□□□□ 0.6
SNX1-208ENST00000559844 TSEN2Q8NCE0 465 aaKnown RBP18.79■□□□□ 0.6
SNX1-208ENST00000559844 TRIM7Q9C029 511 aa18.79■□□□□ 0.6
SNX1-208ENST00000559844 DPP3Q9NY33 737 aa18.79■□□□□ 0.6
SNX1-208ENST00000559844 SNTG2Q9NY99 539 aa18.79■□□□□ 0.6
SNX1-208ENST00000559844 FAN1Q9Y2M0 1017 aa18.79■□□□□ 0.6
SNX1-208ENST00000559844 RALGAPA2Q2PPJ7 1873 aa18.79■□□□□ 0.6
SNX1-208ENST00000559844 DAPK3O43293 454 aa18.79■□□□□ 0.6
SNX1-208ENST00000559844 ZNF623O75123 536 aa18.79■□□□□ 0.6
SNX1-208ENST00000559844 RNF40O75150 1001 aa18.79■□□□□ 0.6
SNX1-208ENST00000559844 CD19P15391 556 aa18.79■□□□□ 0.6
SNX1-208ENST00000559844 ATF7P17544 494 aaPredicted RBP18.79■□□□□ 0.6
SNX1-208ENST00000559844 AKAP5P24588 427 aa18.79■□□□□ 0.6
SNX1-208ENST00000559844 ECHS1P30084 290 aa18.79■□□□□ 0.6
SNX1-208ENST00000559844 POLR2BP30876 1174 aaKnown RBP18.79■□□□□ 0.6
SNX1-208ENST00000559844 GBP1P32455 592 aa18.79■□□□□ 0.6
SNX1-208ENST00000559844 DRG2P55039 364 aaKnown RBP18.79■□□□□ 0.6
SNX1-208ENST00000559844 TRADDQ15628 312 aa18.79■□□□□ 0.6
SNX1-208ENST00000559844 CFAP58Q5T655 872 aa18.79■□□□□ 0.6
SNX1-208ENST00000559844 LLGL2Q6P1M3 1020 aa18.79■□□□□ 0.6
SNX1-208ENST00000559844 DNAJC24Q6P3W2 148 aa18.79■□□□□ 0.6
SNX1-208ENST00000559844 HACE1Q8IYU2 909 aa18.79■□□□□ 0.6
SNX1-208ENST00000559844 TFAP2BQ92481 460 aa18.79■□□□□ 0.6
SNX1-208ENST00000559844 LPPQ93052 612 aa18.79■□□□□ 0.6
SNX1-208ENST00000559844 HPDLQ96IR7 371 aa18.79■□□□□ 0.6
SNX1-208ENST00000559844 ERP44Q9BS26 406 aa18.79■□□□□ 0.6
SNX1-208ENST00000559844 AGAP1Q9UPQ3 857 aa18.79■□□□□ 0.6
SNX1-208ENST00000559844 PDCD11Q14690 1871 aaKnown RBP18.78■□□□□ 0.6
SNX1-208ENST00000559844 MEIS3P2A8K0S8 358 aa18.78■□□□□ 0.6
SNX1-208ENST00000559844 FNTAP49354 379 aa18.78■□□□□ 0.6
SNX1-208ENST00000559844 RAD23BP54727 409 aa18.78■□□□□ 0.6
SNX1-208ENST00000559844 WDR5P61964 334 aaKnown RBP18.78■□□□□ 0.6
SNX1-208ENST00000559844 FAM189BP81408 668 aa18.78■□□□□ 0.6
SNX1-208ENST00000559844 JAMLQ86YT9 394 aa18.78■□□□□ 0.6
SNX1-208ENST00000559844 EXOC4Q96A65 974 aa18.78■□□□□ 0.6
SNX1-208ENST00000559844 DDX27Q96GQ7 796 aaKnown RBP18.78■□□□□ 0.6
SNX1-208ENST00000559844 RNF39Q9H2S5 420 aa18.78■□□□□ 0.6
SNX1-208ENST00000559844 PARP2Q9UGN5 583 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms