RNA–Protein interactions for RNA: ENST00000559822.1

SPG11-219, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 561 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-219ENST00000559822 MAGEA11P43364 429 aa13.14□□□□□ -0.31
SPG11-219ENST00000559822 SOX9P48436 509 aa13.14□□□□□ -0.31
SPG11-219ENST00000559822 ZNF268Q14587 947 aaPredicted RBP13.14□□□□□ -0.31
SPG11-219ENST00000559822 SOWAHAQ2M3V2 549 aa13.14□□□□□ -0.31
SPG11-219ENST00000559822 LMBRD2Q68DH5 695 aaPredicted RBP13.14□□□□□ -0.31
SPG11-219ENST00000559822 VSTM1Q6UX27 236 aa13.14□□□□□ -0.31
SPG11-219ENST00000559822 MON1AQ86VX9 555 aa13.14□□□□□ -0.31
SPG11-219ENST00000559822 XXYLT1Q8NBI6 393 aa13.14□□□□□ -0.31
SPG11-219ENST00000559822 GLIS3Q8NEA6 775 aa13.14□□□□□ -0.31
SPG11-219ENST00000559822 OR5B17Q8NGF7 314 aa13.14□□□□□ -0.31
SPG11-219ENST00000559822 HPS3Q969F9 1004 aa13.14□□□□□ -0.31
SPG11-219ENST00000559822 MYRFLQ96LU7 910 aa13.14□□□□□ -0.31
SPG11-219ENST00000559822 CEP295NLQ96MC4 621 aa13.14□□□□□ -0.31
SPG11-219ENST00000559822 LRRC3BQ96PB8 259 aa13.14□□□□□ -0.31
SPG11-219ENST00000559822 PKMYT1Q99640 499 aa13.14□□□□□ -0.31
SPG11-219ENST00000559822 SYT15Q9BQS2 421 aa13.14□□□□□ -0.31
SPG11-219ENST00000559822 AGPAT3Q9NRZ7 376 aa13.14□□□□□ -0.31
SPG11-219ENST00000559822 TDP1Q9NUW8 608 aa13.14□□□□□ -0.31
SPG11-219ENST00000559822 EHD2Q9NZN4 543 aa13.14□□□□□ -0.31
SPG11-219ENST00000559822 GMEB2Q9UKD1 530 aa13.14□□□□□ -0.31
SPG11-219ENST00000559822 DLATP10515 647 aaKnown RBP13.13□□□□□ -0.31
SPG11-219ENST00000559822 TDGF1P13385 188 aa13.13□□□□□ -0.31
SPG11-219ENST00000559822 SDHBP21912 280 aa13.13□□□□□ -0.31
SPG11-219ENST00000559822 WARSP23381 471 aaKnown RBP13.13□□□□□ -0.31
SPG11-219ENST00000559822 CNR2P34972 360 aa13.13□□□□□ -0.31
SPG11-219ENST00000559822 GPR15P49685 360 aa13.13□□□□□ -0.31
SPG11-219ENST00000559822 PDE6CP51160 858 aa13.13□□□□□ -0.31
SPG11-219ENST00000559822 CYP2J2P51589 502 aa13.13□□□□□ -0.31
SPG11-219ENST00000559822 PSMD6Q15008 389 aa13.13□□□□□ -0.31
SPG11-219ENST00000559822 DDR2Q16832 855 aa13.13□□□□□ -0.31
SPG11-219ENST00000559822 FOXD4L5Q5VV16 416 aaPredicted RBP13.13□□□□□ -0.31
SPG11-219ENST00000559822 RESP18Q5W5W9 173 aa13.13□□□□□ -0.31
SPG11-219ENST00000559822 TXNDC8Q6A555 127 aa13.13□□□□□ -0.31
SPG11-219ENST00000559822 TRAPPC11Q7Z392 1133 aa13.13□□□□□ -0.31
SPG11-219ENST00000559822 LIMS2Q7Z4I7 341 aa13.13□□□□□ -0.31
SPG11-219ENST00000559822 TMEM150AQ86TG1 271 aa13.13□□□□□ -0.31
SPG11-219ENST00000559822 OSTM1Q86WC4 334 aa13.13□□□□□ -0.31
SPG11-219ENST00000559822 SCN4BQ8IWT1 228 aa13.13□□□□□ -0.31
SPG11-219ENST00000559822 CEP57L1Q8IYX8 460 aa13.13□□□□□ -0.31
SPG11-219ENST00000559822 TTC8Q8TAM2 541 aa13.13□□□□□ -0.31
SPG11-219ENST00000559822 GOLGA5Q8TBA6 731 aa13.13□□□□□ -0.31
SPG11-219ENST00000559822 FOXD4L4Q8WXT5 416 aaPredicted RBP13.13□□□□□ -0.31
SPG11-219ENST00000559822 USP13Q92995 863 aaPredicted RBP13.13□□□□□ -0.31
SPG11-219ENST00000559822 MMS19Q96T76 1030 aa13.13□□□□□ -0.31
SPG11-219ENST00000559822 CGRRF1Q99675 332 aa13.13□□□□□ -0.31
SPG11-219ENST00000559822 FAM83CQ9BQN1 747 aa13.13□□□□□ -0.31
SPG11-219ENST00000559822 SMG9Q9H0W8 520 aaKnown RBP13.13□□□□□ -0.31
SPG11-219ENST00000559822 GKN1Q9NS71 199 aa13.13□□□□□ -0.31
SPG11-219ENST00000559822 MAGEC2Q9UBF1 373 aaPredicted RBP13.13□□□□□ -0.31
SPG11-219ENST00000559822 DENND4CQ5VZ89 1909 aa13.13□□□□□ -0.31
SPG11-219ENST00000559822 PTPRJQ12913 1337 aa13.13□□□□□ -0.31
SPG11-219ENST00000559822 KIF26AQ9ULI4 1882 aaPredicted RBP13.12□□□□□ -0.31
SPG11-219ENST00000559822 TRAV19A0A0A6YYK7 116 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 TGFB1I1O43294 461 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 CKMP06732 381 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 FAM163BP0C2L3 166 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 USP17L7P0C7H9 530 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 ANXA13P27216 316 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 HOXD13P35453 343 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 TNNC1P63316 161 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 SATB1Q01826 763 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 FAM160A1Q05DH4 1040 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 TNK2Q07912 1038 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 CYP24A1Q07973 514 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 EHHADHQ08426 723 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 GRSF1Q12849 480 aaKnown RBP eCLIP13.12□□□□□ -0.31
SPG11-219ENST00000559822 TRPC3Q13507 836 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 RUNX3Q13761 415 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 CCINQ13939 588 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 PUM1Q14671 1186 aaKnown RBP eCLIP13.12□□□□□ -0.31
SPG11-219ENST00000559822 PON2Q15165 354 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 PDGFRLQ15198 375 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 BMT2Q1RMZ1 405 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 FOXD4L6Q3SYB3 417 aaPredicted RBP13.12□□□□□ -0.31
SPG11-219ENST00000559822 SDHAF4Q5VUM1 108 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 FAM171BQ6P995 826 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 TXNDC11Q6PKC3 985 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 FOXD4L3Q6VB84 417 aaPredicted RBP13.12□□□□□ -0.31
SPG11-219ENST00000559822 LONP2Q86WA8 852 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 NELFCDQ8IXH7 590 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 C12orf56Q8IXR9 622 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 DCLK2Q8N568 766 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 SCFD1Q8WVM8 642 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 KBTBD7Q8WVZ9 684 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 FAM84AQ96KN4 292 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 SNX25Q9H3E2 840 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 TRPC7Q9HCX4 862 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 RBM12Q9NTZ6 932 aaKnown RBP13.12□□□□□ -0.31
SPG11-219ENST00000559822 PCDHA7Q9UN72 937 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 ZNF638Q14966 1978 aaKnown RBP13.12□□□□□ -0.31
SPG11-219ENST00000559822 OBSL1O75147 1896 aa13.12□□□□□ -0.31
SPG11-219ENST00000559822 TRIM66O15016 1216 aa13.11□□□□□ -0.31
SPG11-219ENST00000559822 CLIC2O15247 247 aa13.11□□□□□ -0.31
SPG11-219ENST00000559822 ATG13O75143 517 aa13.11□□□□□ -0.31
SPG11-219ENST00000559822 TACC1O75410 805 aa13.11□□□□□ -0.31
SPG11-219ENST00000559822 PFKLP17858 780 aa13.11□□□□□ -0.31
SPG11-219ENST00000559822 ATICP31939 592 aa13.11□□□□□ -0.31
SPG11-219ENST00000559822 GRIK1P39086 918 aa13.11□□□□□ -0.31
SPG11-219ENST00000559822 PSMC1P62191 440 aaKnown RBP13.11□□□□□ -0.31
SPG11-219ENST00000559822 LMNB2Q03252 620 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms